Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
| 2XLK_B
|
2XLK_D
|
4AL7_A
|
4AL7_B
|
Conserved?
|
|---|---|---|---|---|
| B:153 [GLN] | D:6 [C] | A:153 [GLN] | B:6 [C] | ✔ |
| B:102 [ARG] | D:6 [C] | A:102 [ARG] | B:6 [C] | ✔ |
| B:102 [ARG] | D:18 [C] | A:102 [ARG] | B:18 [C] | ✔ |
| B:102 [ARG] | D:19 [A] | A:102 [ARG] | B:19 [A] | ✔ |
| B:154 [HIS] | D:6 [C] | A:154 [HIS] | B:6 [C] | ✔ |
| B:104 [GLN] | D:7 [U] | A:104 [GLN] | B:7 [U] | ✔ |
| B:104 [GLN] | D:18 [C] | A:104 [GLN] | B:18 [C] | ✔ |
| B:104 [GLN] | D:19 [A] | A:104 [GLN] | B:19 [A] | ✔ |
| B:174 [THR] | D:19 [A] | A:174 [THR] | B:19 [A] | ✔ |
| B:155 [PHE] | D:6 [C] | A:155 [PHE] | B:6 [C] | ✔ |
| B:153 [GLN] | D:7 [U] | A:153 [GLN] | B:7 [U] | ❌ 4AL7_A_B |
| B:104 [GLN] | D:6 [C] | A:104 [GLN] | B:6 [C] | ❌ 4AL7_A_B |
| B:104 [GLN] | D:8 [G] | A:104 [GLN] | B:8 [G] | ❌ 4AL7_B:8 no longer at interface |
| B:102 [ARG] | D:20 [DG] | A:102 [ARG] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:148 [SER] | D:20 [DG] | A:148 [SER] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:155 [PHE] | D:20 [DG] | A:155 [PHE] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:174 [THR] | D:20 [DG] | A:174 [THR] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:175 [CYS] | D:20 [DG] | A:175 [CYS] | B:20 [G] | ❌ 2XLK_B:175, 2XLK_D:20 no longer at interface |
| B:176 [TYR] | D:20 [DG] | A:176 [TYR] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:29 [HIS] | D:20 [DG] | A:29 [HIS] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:33 [VAL] | D:20 [DG] | A:33 [VAL] | B:20 [G] | ❌ 2XLK_B:33, 2XLK_D:20 no longer at interface |
| B:156 [ARG] | D:6 [C] | A:156 [ARG] | B:6 [C] | ❌ 4AL7_A:156 no longer at interface |
| B:151 [THR] | D:6 [C] | A:151 [THR] | B:6 [C] | ❌ 2XLK_B:151 no longer at interface |
| B:180 [LYS] | D:19 [A] | A:180 [LYS] | B:19 [A] | ❌ 2XLK_B:180 no longer at interface |
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.94 | 0.92 | 0.69 | 0.96 | 0.5 | 0.69 | 0.8 | 0.44 | 0.40 | 0.40 | 0.86 |
Other pairs involving 2XLK_B_D or 4AL7_A_B
Total number of entries: 5
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 2XLK_B_D | 4AL7_A_B | 0.44 | 0.94 | 0.92 | 0.69 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 2XLK_B_D | 4AL5_A_B | 0.67 | 0.96 | 0.8 | 0.86 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 2XLI_A_B | 2XLK_B_D | 0.81 | 0.97 | 0.48 | 0.95 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 2XLI_A_B | 4AL7_A_B | 0.43 | 0.97 | 0.73 | 0.69 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 4AL5_A_B | 4AL7_A_B | 0.75 | 0.95 | 1.61 | 0.85 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare |