Synteruptor database creator

Use this page to create a Synteruptor database (in sqlite3 format) based on uploaded genomes.

The final database can be downloaded for local analyzis, or it can be explored on the Synteruptor web site.

Alternatively you can upload a Synteruptor database directly if you have already generated a database yourself.

Restrictions

  • The files must be in Genbank format (.gb, .gbk, .gbff), or EMBL format (.dat, .embl), including the genomic sequences.
  • The files can be compressed with gzip or zip for faster upload (.gz, .zip).
  • The files have to be smaller than 400M.
  • At most 20 genomes can be uploaded.
  • The files must include the nucleotide sequences and structural annotations.
For bigger databases or genomes, you can run the scripts locally or ask us to do it for you, see the contact page.

Genomes upload

0 uploaded genomes:
  1. You can add up to 20 more genomes:
Not enough genomes to create a database (0 < 2).

Information about the data provided and generated

  • The job will send you an e-mail (if provided) when the database creation starts and when it ends. You can also check the progress on this page: Synteruptor job: mgnMUQhhF (if you didn't provide your email address, we strongly recommend that bookmark this page).
  • The mail provided will only be used to send the progress information.
  • The files uploaded will be conserved until the database has been built, and they will then be deleted from our servers.
  • The created database is not made public and can only be accessed with the random id created for it (mgnMUQhhF).
  • To make the created database public, please contact us.
  • Only the link provided in the the e-mail (or in the present page) can be used to access the generated database.