DeNovoGenesDB

H. sapiens

The Rules Panel enables users to set the desired criteria for identifying de novo emerged genes, while the Output Panel facilitates filtering and analysis of the resulting list.

The default table displayed was generated with the default parameters of the DENSE workflow:

• TRGs at Hominidae level
• Hit in non-coding regions (NCR) of outgroup species validated
• Microsynteny validated (1 on core up- & downstream in a window of 4 genes)

However, you can try out your own combination of some of these settings using the Rules box below.

Visible columns

• CDS
• Code
• Gene
• Phylostratum
• Rank
• Protein size
• Is denovo?
• Is orphan?
• Is TRG?

Table content is loading...

CDS	Code	Gene	Phylostratum	Rank	Protein size	Is denovo?	Is orphan?	Is TRG?
id-IGHD1-7-2	IGHD1-7	IGHD1-7	Unknown	X	5	✘	✘	✘
id-IGHD2-15	IGHD2-15	IGHD2-15	Unknown	X	10	✘	✘	✘
id-IGHD2-15-2	IGHD2-15	IGHD2-15	Unknown	X	10	✘	✘	✘
id-IGHD2-2	IGHD2-2	IGHD2-2	Unknown	X	10	✘	✘	✘
id-IGHD2-2-2	IGHD2-2	IGHD2-2	Unknown	X	10	✘	✘	✘
id-IGHD2-21	IGHD2-21	IGHD2-21	Unknown	X	9	✘	✘	✘
id-IGHD2-21-2	IGHD2-21	IGHD2-21	Unknown	X	9	✘	✘	✘
id-IGHD2-8	IGHD2-8	IGHD2-8	Unknown	X	10	✘	✘	✘
id-IGHD2-8-2	IGHD2-8	IGHD2-8	Unknown	X	10	✘	✘	✘
id-IGHD3-10	IGHD3-10	IGHD3-10	Unknown	X	10	✘	✘	✘
id-IGHD3-10-2	IGHD3-10	IGHD3-10	Unknown	X	10	✘	✘	✘
id-IGHD3-16	IGHD3-16	IGHD3-16	Unknown	X	12	✘	✘	✘
id-IGHD3-16-2	IGHD3-16	IGHD3-16	Unknown	X	12	✘	✘	✘
id-IGHD3-22	IGHD3-22	IGHD3-22	Unknown	X	10	✘	✘	✘
id-IGHD3-22-2	IGHD3-22	IGHD3-22	Unknown	X	10	✘	✘	✘

Total number of records: 144892

Records per page: 10 | 20 | 50 | 100

Rules ^†

Hit in NCR*

Hit in NCR* and valid synteny

Hit in NCR* in outgroup

Hit in NCR* in outgroup and valid synteny

*NCR: Non-Coding Regions Apply

Output

Search entry by name

Select de novo status

All

Yes

No

Select orphan status

All

Yes

No

Select phylostratum 1 - cellular organisms 2 - Eukaryota 3 - Opisthokonta 4 - Metazoa 5 - Eumetazoa 6 - Bilateria 7 - Deuterostomia 8 - Chordata 9 - Vertebrata 10 - Gnathostomata 11 - Euteleostomi 12 - Sarcopterygii 13 - Dipnotetrapodomorpha 14 - Tetrapoda 15 - Amniota 16 - Mammalia 17 - Theria 18 - Eutheria 19 - Boreoeutheria 20 - Euarchontoglires 21 - Primates 23 - Simiiformes 24 - Catarrhini 25 - Hominoidea 26 - Hominidae 27 - Homininae 28 - Homo sapiens X - Unknown X - Possible contamination or HGT

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Phylogeny

_____ H. sapiens | __| __ P. troglodytes | |__| __| |__ P. paniscus | | __| |________ G. gorilla | | _| |___________ P. abelii | |______________ N. leucogenys