DeNovoGenesDB

M. musculus

The Rules Panel enables users to set the desired criteria for identifying de novo emerged genes, while the Output Panel facilitates filtering and analysis of the resulting list.

The default table displayed was generated with the default parameters of the DENSE workflow:

• TRGs at Murinae level
• Hit in non-coding regions (NCR) of outgroup species validated
• Microsynteny validated (1 on core up- & downstream in a window of 4 genes)

However, you can try out your own combination of some of these settings using the Rules box below.

Visible columns

• CDS
• Code
• Gene
• Phylostratum
• Rank
• Protein size
• Is denovo?
• Is orphan?
• Is TRG?

Table content is loading...

CDS	Code	Gene	Phylostratum	Rank	Protein size	Is denovo?	Is orphan?	Is TRG?
rna-XM_036165751.1	XM_036165751.1	Erc1	cellular organisms	1	1088	✘	✘	✘
rna-XM_036165752.1	XM_036165752.1	Foxp2	cellular organisms	1	740	✘	✘	✘
rna-XM_036165753.1	XM_036165753.1	Ankrd44	cellular organisms	1	968	✘	✘	✘
rna-XM_036165754.1	XM_036165754.1	Adcyap1r1	cellular organisms	1	496	✘	✘	✘
rna-XM_036165761.1	XM_036165761.1	Anxa4	cellular organisms	1	319	✘	✘	✘
rna-XM_036165764.1	XM_036165764.1	Bicd1	Eukaryota	2	974	✘	✘	✘
rna-XM_036165765.1	XM_036165765.1	Bicd1	Eukaryota	2	910	✘	✘	✘
rna-XM_036165766.1	XM_036165766.1	Bicd1	Eukaryota	2	830	✘	✘	✘
rna-XM_036165767.1	XM_036165767.1	Bid	Gnathostomata	10	195	✘	✘	✘
rna-XM_036165785.1	XM_036165785.1	Ccnd2	cellular organisms	1	349	✘	✘	✘
rna-XM_036165786.1	XM_036165786.1	Ccnd2	cellular organisms	1	336	✘	✘	✘
rna-XM_036165787.1	XM_036165787.1	Ccnd2	cellular organisms	1	336	✘	✘	✘
rna-XM_036165788.1	XM_036165788.1	Ccnd2	Mus musculus	29	195	✘	✘	✘
rna-XM_036165789.1	XM_036165789.1	Ccnd2	Mus musculus	29	182	✘	✘	✘
rna-XM_036165796.1	XM_036165796.1	Clcn1	cellular organisms	1	764	✘	✘	✘

Total number of records: 40867

Records per page: 10 | 20 | 50 | 100

Rules ^†

Hit in NCR*

Hit in NCR* and valid synteny

Hit in NCR* in outgroup

Hit in NCR* in outgroup and valid synteny

*NCR: Non-Coding Regions Apply

Output

Search entry by name

Select de novo status

All

Yes

No

Select orphan status

All

Yes

No

Select phylostratum 1 - cellular organisms 2 - Eukaryota 3 - Opisthokonta 4 - Metazoa 5 - Eumetazoa 6 - Bilateria 7 - Deuterostomia 8 - Chordata 9 - Vertebrata 10 - Gnathostomata 11 - Euteleostomi 12 - Sarcopterygii 13 - Dipnotetrapodomorpha 14 - Tetrapoda 15 - Amniota 16 - Mammalia 17 - Theria 18 - Eutheria 19 - Boreoeutheria 20 - Euarchontoglires 21 - Glires 22 - Rodentia 23 - Myomorpha 24 - Muroidea 25 - Muridae 26 - Murinae 27 - Mus 28 - Mus 29 - Mus musculus X - Unknown X - Possible contamination or HGT

Apply x Clear all fields

Export the current table

Phylogeny

____ M. musculus __| __| |____ M. caroli | | __| |_______ M. pahari | | | | _______ A. niloticus | |__| | |_______ G. surdaster | _| __ R. rattus |__________| | |__ R. norvegicus | |_____________ M. coucha