DeNovoGenesDB

M. musculus

The Rules Panel enables users to set the desired criteria for identifying de novo emerged genes, while the Output Panel facilitates filtering and analysis of the resulting list.

The default table displayed was generated with the default parameters of the DENSE workflow:

• TRGs at Murinae level
• Hit in non-coding regions (NCR) of outgroup species validated
• Microsynteny validated (1 on core up- & downstream in a window of 4 genes)

However, you can try out your own combination of some of these settings using the Rules box below.

Visible columns

• CDS
• Code
• Gene
• Phylostratum
• Rank
• Protein size
• Is denovo?
• Is orphan?
• Is TRG?

Table content is loading...

CDS	Code	Gene	Phylostratum	Rank	Protein size	Is denovo?	Is orphan?	Is TRG?
rna-XM_036166218.1	XM_036166218.1	Podxl2	Gnathostomata	10	693	✘	✘	✘
rna-XM_036166222.1	XM_036166222.1	Etfbkmt	cellular organisms	1	255	✘	✘	✘
rna-XM_036166223.1	XM_036166223.1	Etfbkmt	cellular organisms	1	184	✘	✘	✘
rna-XM_036166224.1	XM_036166224.1	Etfbkmt	cellular organisms	1	128	✘	✘	✘
rna-XM_036166225.1	XM_036166225.1	Tafa1	Chordata	8	132	✘	✘	✘
rna-XM_036166229.1	XM_036166229.1	Dennd5b	cellular organisms	1	968	✘	✘	✘
rna-XM_036166230.1	XM_036166230.1	Dennd5b	cellular organisms	1	852	✘	✘	✘
rna-XM_036166232.1	XM_036166232.1	Mgat5	cellular organisms	1	740	✘	✘	✘
rna-XM_036166233.1	XM_036166233.1	Iffo1	Vertebrata	9	559	✘	✘	✘
rna-XM_036166234.1	XM_036166234.1	Iffo1	Vertebrata	9	557	✘	✘	✘
rna-XM_036166235.1	XM_036166235.1	Iffo1	Vertebrata	9	556	✘	✘	✘
rna-XM_036166236.1	XM_036166236.1	Tafa4	Chordata	8	135	✘	✘	✘
rna-XM_036166237.1	XM_036166237.1	Tafa4	Chordata	8	135	✘	✘	✘
rna-XM_036166239.1	XM_036166239.1	Ipo8	cellular organisms	1	1009	✘	✘	✘
rna-XM_036166240.1	XM_036166240.1	Ipo8	cellular organisms	1	965	✘	✘	✘

Total number of records: 40867

Records per page: 10 | 20 | 50 | 100

Rules ^†

Hit in NCR*

Hit in NCR* and valid synteny

Hit in NCR* in outgroup

Hit in NCR* in outgroup and valid synteny

*NCR: Non-Coding Regions Apply

Output

Search entry by name

Select de novo status

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Yes

No

Select orphan status

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Yes

No

Select phylostratum 1 - cellular organisms 2 - Eukaryota 3 - Opisthokonta 4 - Metazoa 5 - Eumetazoa 6 - Bilateria 7 - Deuterostomia 8 - Chordata 9 - Vertebrata 10 - Gnathostomata 11 - Euteleostomi 12 - Sarcopterygii 13 - Dipnotetrapodomorpha 14 - Tetrapoda 15 - Amniota 16 - Mammalia 17 - Theria 18 - Eutheria 19 - Boreoeutheria 20 - Euarchontoglires 21 - Glires 22 - Rodentia 23 - Myomorpha 24 - Muroidea 25 - Muridae 26 - Murinae 27 - Mus 28 - Mus 29 - Mus musculus X - Unknown X - Possible contamination or HGT

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Phylogeny

____ M. musculus __| __| |____ M. caroli | | __| |_______ M. pahari | | | | _______ A. niloticus | |__| | |_______ G. surdaster | _| __ R. rattus |__________| | |__ R. norvegicus | |_____________ M. coucha