DeNovoGenesDB

M. musculus

The Rules Panel enables users to set the desired criteria for identifying de novo emerged genes, while the Output Panel facilitates filtering and analysis of the resulting list.

The default table displayed was generated with the default parameters of the DENSE workflow:

• TRGs at Murinae level
• Hit in non-coding regions (NCR) of outgroup species validated
• Microsynteny validated (1 on core up- & downstream in a window of 4 genes)

However, you can try out your own combination of some of these settings using the Rules box below.

Visible columns

• CDS
• Code
• Gene
• Phylostratum
• Rank
• Protein size
• Is denovo?
• Is orphan?
• Is TRG?

Table content is loading...

CDS	Code	Gene	Phylostratum	Rank	Protein size	Is denovo?	Is orphan?	Is TRG?
id-Traj45	id-Traj45	Traj45	Mus musculus	29	19	✘	✘	✘
id-Traj47	id-Traj47	Traj47	Mus musculus	29	17	✘	✘	✘
id-Traj48	id-Traj48	Traj48	Mus	27	20	✘	✘	✘
id-Traj49	id-Traj49	Traj49	Mus	27	19	✘	✘	✘
id-Traj5	id-Traj5	Traj5	Mus musculus	29	20	✘	✘	✘
id-Traj50	id-Traj50	Traj50	Mus musculus	29	20	✘	✘	✘
id-Traj51	id-Traj51	Traj51	Mus musculus	29	14	✘	✘	✘
id-Traj52	id-Traj52	Traj52	Mus musculus	29	21	✘	✘	✘
id-Traj53	id-Traj53	Traj53	Mus musculus	29	21	✘	✘	✘
id-Traj56	id-Traj56	Traj56	Mus musculus	29	20	✘	✘	✘
id-Traj57	id-Traj57	Traj57	Mus musculus	29	20	✘	✘	✘
id-Traj58	id-Traj58	Traj58	Mus musculus	29	20	✘	✘	✘
id-Traj59	id-Traj59	Traj59	Mus musculus	29	20	✘	✘	✘
id-Traj6	id-Traj6	Traj6	Mus musculus	29	20	✘	✘	✘
id-Traj7	id-Traj7	Traj7	Mus musculus	29	19	✘	✘	✘

Total number of records: 40867

Records per page: 10 | 20 | 50 | 100

Rules ^†

Hit in NCR*

Hit in NCR* and valid synteny

Hit in NCR* in outgroup

Hit in NCR* in outgroup and valid synteny

*NCR: Non-Coding Regions Apply

Output

Search entry by name

Select de novo status

All

Yes

No

Select orphan status

All

Yes

No

Select phylostratum 1 - cellular organisms 2 - Eukaryota 3 - Opisthokonta 4 - Metazoa 5 - Eumetazoa 6 - Bilateria 7 - Deuterostomia 8 - Chordata 9 - Vertebrata 10 - Gnathostomata 11 - Euteleostomi 12 - Sarcopterygii 13 - Dipnotetrapodomorpha 14 - Tetrapoda 15 - Amniota 16 - Mammalia 17 - Theria 18 - Eutheria 19 - Boreoeutheria 20 - Euarchontoglires 21 - Glires 22 - Rodentia 23 - Myomorpha 24 - Muroidea 25 - Muridae 26 - Murinae 27 - Mus 28 - Mus 29 - Mus musculus X - Unknown X - Possible contamination or HGT

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Phylogeny

____ M. musculus __| __| |____ M. caroli | | __| |_______ M. pahari | | | | _______ A. niloticus | |__| | |_______ G. surdaster | _| __ R. rattus |__________| | |__ R. norvegicus | |_____________ M. coucha