RNAprotDB

All interfaces > All interologs > Interface groups > group105 > 1JJ2_1_0 vs 1YHQ_2_0

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1JJ2_1
1JJ2_0
1YHQ_2
1YHQ_0
Conserved?
1:6 [ALA] 0:121 [U] 2:6 [ALA] 0:121 [U] ✔
1:6 [ALA] 0:122 [C] 2:6 [ALA] 0:122 [C] ✔
1:7 [THR] 0:120 [A] 2:7 [THR] 0:120 [A] ✔
1:7 [THR] 0:121 [U] 2:7 [THR] 0:121 [U] ✔
1:19 [SER] 0:60 [A] 2:19 [SER] 0:60 [A] ✔
1:19 [SER] 0:1442 [A] 2:19 [SER] 0:1442 [A] ✔
1:47 [THR] 0:1417 [G] 2:47 [THR] 0:1417 [G] ✔
1:40 [ARG] 0:1417 [G] 2:40 [ARG] 0:1417 [G] ✔
1:40 [ARG] 0:1418 [U] 2:40 [ARG] 0:1418 [U] ✔
1:3 [LYS] 0:1417 [G] 2:3 [LYS] 0:1417 [G] ✔
1:3 [LYS] 0:1418 [U] 2:3 [LYS] 0:1418 [U] ✔
1:3 [LYS] 0:1486 [A] 2:3 [LYS] 0:1486 [A] ✔
1:3 [LYS] 0:1675 [C] 2:3 [LYS] 0:1675 [C] ✔
1:3 [LYS] 0:1676 [G] 2:3 [LYS] 0:1676 [G] ✔
1:3 [LYS] 0:1677 [U] 2:3 [LYS] 0:1677 [U] ✔
1:10 [ARG] 0:52 [A] 2:10 [ARG] 0:52 [A] ✔
1:10 [ARG] 0:53 [C] 2:10 [ARG] 0:53 [C] ✔
1:10 [ARG] 0:120 [A] 2:10 [ARG] 0:120 [A] ✔
1:10 [ARG] 0:121 [U] 2:10 [ARG] 0:121 [U] ✔
1:25 [VAL] 0:60 [A] 2:25 [VAL] 0:60 [A] ✔
1:25 [VAL] 0:86 [A] 2:25 [VAL] 0:86 [A] ✔
1:29 [THR] 0:86 [A] 2:29 [THR] 0:86 [A] ✔
1:29 [THR] 0:87 [C] 2:29 [THR] 0:87 [C] ✔
1:17 [GLN] 0:60 [A] 2:17 [GLN] 0:60 [A] ✔
1:17 [GLN] 0:61 [G] 2:17 [GLN] 0:61 [G] ✔
1:8 [LYS] 0:1676 [G] 2:8 [LYS] 0:1676 [G] ✔
1:8 [LYS] 0:1677 [U] 2:8 [LYS] 0:1677 [U] ✔
1:2 [LYS] 0:1413 [A] 2:2 [LYS] 0:1413 [A] ✔
1:2 [LYS] 0:1414 [A] 2:2 [LYS] 0:1414 [A] ✔
1:2 [LYS] 0:1415 [G] 2:2 [LYS] 0:1415 [G] ✔
1:2 [LYS] 0:1486 [A] 2:2 [LYS] 0:1486 [A] ✔
1:2 [LYS] 0:1676 [G] 2:2 [LYS] 0:1676 [G] ✔
1:22 [PRO] 0:59 [A] 2:22 [PRO] 0:59 [A] ✔
1:22 [PRO] 0:60 [A] 2:22 [PRO] 0:60 [A] ✔
1:46 [ASP] 0:1417 [G] 2:46 [ASP] 0:1417 [G] ✔
1:46 [ASP] 0:1687 [C] 2:46 [ASP] 0:1687 [C] ✔
1:9 [LYS] 0:53 [C] 2:9 [LYS] 0:53 [C] ✔
1:9 [LYS] 0:54 [G] 2:9 [LYS] 0:54 [G] ✔
1:9 [LYS] 0:122 [C] 2:9 [LYS] 0:122 [C] ✔
1:37 [HIS] 0:462 [A] 2:37 [HIS] 0:462 [A] ✔
1:37 [HIS] 0:466 [A] 2:37 [HIS] 0:466 [A] ✔
1:24 [TRP] 0:58 [C] 2:24 [TRP] 0:58 [C] ✔
1:24 [TRP] 0:59 [A] 2:24 [TRP] 0:59 [A] ✔
1:24 [TRP] 0:60 [A] 2:24 [TRP] 0:60 [A] ✔
1:24 [TRP] 0:86 [A] 2:24 [TRP] 0:86 [A] ✔
1:24 [TRP] 0:88 [G] 2:24 [TRP] 0:88 [G] ✔
1:41 [HIS] 0:1418 [U] 2:41 [HIS] 0:1418 [U] ✔
1:41 [HIS] 0:1438 [G] 2:41 [HIS] 0:1438 [G] ✔
1:41 [HIS] 0:1439 [C] 2:41 [HIS] 0:1439 [C] ✔
1:41 [HIS] 0:1440 [U] 2:41 [HIS] 0:1440 [U] ✔
1:4 [SER] 0:121 [U] 2:4 [SER] 0:121 [U] ✔
1:4 [SER] 0:1675 [C] 2:4 [SER] 0:1675 [C] ✔
1:4 [SER] 0:1676 [G] 2:4 [SER] 0:1676 [G] ✔
1:35 [ARG] 0:462 [A] 2:35 [ARG] 0:462 [A] ✔
1:35 [ARG] 0:514 [G] 2:35 [ARG] 0:514 [G] ✔
1:15 [ASP] 0:1418 [U] 2:15 [ASP] 0:1418 [U] ✔
1:1 [GLY] 0:1414 [A] 2:1 [GLY] 0:1414 [A] ✔
1:1 [GLY] 0:1415 [G] 2:1 [GLY] 0:1415 [G] ✔
1:1 [GLY] 0:1417 [G] 2:1 [GLY] 0:1417 [G] ✔
1:1 [GLY] 0:1681 [G] 2:1 [GLY] 0:1681 [G] ✔
1:31 [GLU] 0:513 [A] 2:31 [ARG] 0:513 [A] ✔
1:11 [LEU] 0:1417 [G] 2:11 [LEU] 0:1417 [G] ✔
1:11 [LEU] 0:1418 [U] 2:11 [LEU] 0:1418 [U] ✔
1:30 [ASP] 0:87 [C] 2:30 [ASP] 0:87 [C] ✔
1:38 [LYS] 0:61 [G] 2:38 [LYS] 0:61 [G] ✔
1:38 [LYS] 0:62 [C] 2:38 [LYS] 0:62 [C] ✔
1:38 [LYS] 0:465 [U] 2:38 [LYS] 0:465 [U] ✔
1:38 [LYS] 0:466 [A] 2:38 [LYS] 0:466 [A] ✔
1:27 [LEU] 0:87 [C] 2:27 [LEU] 0:87 [C] ✔
1:27 [LEU] 0:88 [G] 2:27 [LEU] 0:88 [G] ✔
1:39 [ARG] 0:467 [G] 2:39 [ARG] 0:467 [G] ✔
1:39 [ARG] 0:1441 [G] 2:39 [ARG] 0:1441 [G] ✔
1:36 [ASN] 0:60 [A] 2:36 [ASN] 0:60 [A] ✔
1:16 [ASN] 0:60 [A] 2:16 [ASN] 0:60 [A] ✔
1:45 [ASN] 0:467 [G] 2:45 [ASN] 0:467 [G] ✔
1:45 [ASN] 0:1416 [G] 2:45 [ASN] 0:1416 [G] ✔
1:45 [ASN] 0:1417 [G] 2:45 [ASN] 0:1417 [G] ✔
1:5 [LYS] 0:122 [C] 2:5 [LYS] 0:122 [C] ✔
1:5 [LYS] 0:123 [U] 2:5 [LYS] 0:123 [U] ✔
1:5 [LYS] 0:1674 [C] 2:5 [LYS] 0:1674 [C] ✔
1:5 [LYS] 0:1675 [C] 2:5 [LYS] 0:1675 [C] ✔
1:5 [LYS] 0:1676 [G] 2:5 [LYS] 0:1676 [G] ✔
1:28 [LYS] 0:59 [A] 2:28 [LYS] 0:59 [A] ✔
1:28 [LYS] 0:84 [G] 2:28 [LYS] 0:84 [G] ✔
1:28 [LYS] 0:86 [A] 2:28 [LYS] 0:86 [A] ✔
1:28 [LYS] 0:87 [C] 2:28 [LYS] 0:87 [C] ✔
1:28 [LYS] 0:88 [G] 2:28 [LYS] 0:88 [G] ✔
1:13 [LYS] 0:53 [C] 2:13 [LYS] 0:53 [C] ✔
1:13 [LYS] 0:54 [G] 2:13 [LYS] 0:54 [G] ✔
1:20 [ARG] 0:60 [A] 2:20 [ARG] 0:60 [A] ✔
1:20 [ARG] 0:1441 [G] 2:20 [ARG] 0:1441 [G] ✔
1:20 [ARG] 0:1442 [A] 2:20 [ARG] 0:1442 [A] ✔
1:49 [GLU] 0:120 [A] 2:49 [GLU] 0:120 [A] ✔
1:49 [GLU] 0:1416 [G] 2:49 [GLU] 0:1416 [G] ✔
1:42 [TRP] 0:1416 [G] 2:42 [TRP] 0:1416 [G] ✔
1:42 [TRP] 0:1417 [G] 2:42 [TRP] 0:1417 [G] ✔
1:42 [TRP] 0:1418 [U] 2:42 [TRP] 0:1418 [U] ✔
1:42 [TRP] 0:1419 [U] 2:42 [TRP] 0:1419 [U] ✔
1:42 [TRP] 0:1438 [G] 2:42 [TRP] 0:1438 [G] ✔
1:42 [TRP] 0:1439 [C] 2:42 [TRP] 0:1439 [C] ✔
1:42 [TRP] 0:1685 [A] 2:42 [TRP] 0:1685 [A] ✔
1:42 [TRP] 0:1686 [C] 2:42 [TRP] 0:1686 [C] ✔
1:21 [VAL] 0:60 [A] 2:21 [VAL] 0:60 [A] ✔
1:44 [ARG] 0:1690 [C] 2:44 [ARG] 0:1690 [C] ✔
1:44 [ARG] 0:1691 [A] 2:44 [ARG] 0:1691 [A] ✔
1:43 [ARG] 0:1438 [G] 2:43 [ARG] 0:1438 [G] ✔
1:43 [ARG] 0:1684 [A] 2:43 [ARG] 0:1684 [A] ✔
1:43 [ARG] 0:1685 [A] 2:43 [ARG] 0:1685 [A] ✔
1:43 [ARG] 0:1686 [C] 2:43 [ARG] 0:1686 [C] ✔
1:43 [ARG] 0:1691 [A] 2:43 [ARG] 0:1691 [A] ✔
1:46 [ASP] 0:1416 [G] 2:46 [ASP] 0:1416 [G] ❌ 1YHQ_2_0
1:28 [LYS] 0:58 [C] 2:28 [LYS] 0:58 [C] ❌ 1YHQ_2_0
1:20 [ARG] 0:1440 [U] 2:20 [ARG] 0:1440 [U] ❌ 1YHQ_2_0
1:43 [ARG] 0:1690 [C] 2:43 [ARG] 0:1690 [C] ❌ 1YHQ_2_0
1:37 [HIS] 0:465 [U] 2:37 [HIS] 0:465 [U] ❌ 1JJ2_1_0
1:3 [LYS] 0:1678 [A] 2:3 [LYS] 0:1678 [A] ❌ 1YHQ_0:1678 no longer at interface
1:8 [LYS] 0:1446 [U] 2:8 [LYS] 0:1446 [U] ❌ 1YHQ_0:1446 no longer at interface
1:44 [ARG] 0:468 [U] 2:44 [ARG] 0:468 [U] ❌ 1YHQ_0:468 no longer at interface
1:2 [LYS] 0:1452 [G] 2:2 [LYS] 0:1452 [G] ❌ 1JJ2_0:1452 no longer at interface
1:28 [LYS] 0:85 [C] 2:28 [LYS] 0:85 [C] ❌ 1JJ2_0:85 no longer at interface
1:14 [LEU] 0:1418 [U] 2:14 [LEU] 0:1418 [U] ❌ 1YHQ_2:14 no longer at interface
1:48 [ASP] 0:1417 [G] 2:48 [ASP] 0:1417 [G] ❌ 1JJ2_1:48 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L39e Archaeal large subunit ribosomal RNA 1.0 0.29 0.95 0.99 1.0 0.98 0.96 0.99 0.97 0.80 0.58


Other pairs involving 1JJ2_1_0 or 1YHQ_2_0

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_1_0 7O7Y_Bl_B5 0.80 0.94 2.12 0.34 Ribosomal protein L39e compare
1JJ2_1_0 1VQ8_2_0 0.98 1.0 0.52 0.96 Ribosomal protein L39e Archaeal large subunit ribosomal RNA compare
1JJ2_1_0 1YHQ_2_0 0.99 1.0 0.29 0.95 Ribosomal protein L39e Archaeal large subunit ribosomal RNA compare
1JJ2_1_0 6AZ3_l_1,2 0.76 0.79 1.79 0.38 Ribosomal protein L39e compare
1JJ2_1_0 7O7Y_Bl_B8 0.57 0.75 1.49 0.36 Ribosomal protein L39e compare
1JJ2_1_0 6AZ3_l_7 0.63 0.72 1.52 0.42 Ribosomal protein L39e compare
1VQ8_2_0 1YHQ_2_0 0.99 1.0 0.33 0.98 Ribosomal protein L39e Archaeal large subunit ribosomal RNA compare
1YHQ_2_0 6AZ3_l_7 0.79 0.72 1.34 0.42 Ribosomal protein L39e compare
1YHQ_2_0 6AZ3_l_1,2 0.73 0.79 1.93 0.38 Ribosomal protein L39e compare
1YHQ_2_0 7O7Y_Bl_B5 0.76 0.94 2.21 0.38 Ribosomal protein L39e compare
1YHQ_2_0 7O7Y_Bl_B8 0.72 0.75 1.32 0.36 Ribosomal protein L39e compare