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All interfaces > All interologs > Interface groups > group105 > 1JJ2_1_0 vs 1YHQ_2_0

Interface analysis


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Licorice
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RNA

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Licorice
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Common contacts -

1JJ2_1
1JJ2_0
1YHQ_2
1YHQ_0
Conserved?
1:6 [ALA] 0:121 [U] 2:6 [ALA] 0:121 [U] ✔
1:6 [ALA] 0:122 [C] 2:6 [ALA] 0:122 [C] ✔
1:7 [THR] 0:120 [A] 2:7 [THR] 0:120 [A] ✔
1:7 [THR] 0:121 [U] 2:7 [THR] 0:121 [U] ✔
1:19 [SER] 0:60 [A] 2:19 [SER] 0:60 [A] ✔
1:19 [SER] 0:1442 [A] 2:19 [SER] 0:1442 [A] ✔
1:47 [THR] 0:1417 [G] 2:47 [THR] 0:1417 [G] ✔
1:40 [ARG] 0:1417 [G] 2:40 [ARG] 0:1417 [G] ✔
1:40 [ARG] 0:1418 [U] 2:40 [ARG] 0:1418 [U] ✔
1:3 [LYS] 0:1417 [G] 2:3 [LYS] 0:1417 [G] ✔
1:3 [LYS] 0:1418 [U] 2:3 [LYS] 0:1418 [U] ✔
1:3 [LYS] 0:1486 [A] 2:3 [LYS] 0:1486 [A] ✔
1:3 [LYS] 0:1675 [C] 2:3 [LYS] 0:1675 [C] ✔
1:3 [LYS] 0:1676 [G] 2:3 [LYS] 0:1676 [G] ✔
1:3 [LYS] 0:1677 [U] 2:3 [LYS] 0:1677 [U] ✔
1:10 [ARG] 0:52 [A] 2:10 [ARG] 0:52 [A] ✔
1:10 [ARG] 0:53 [C] 2:10 [ARG] 0:53 [C] ✔
1:10 [ARG] 0:120 [A] 2:10 [ARG] 0:120 [A] ✔
1:10 [ARG] 0:121 [U] 2:10 [ARG] 0:121 [U] ✔
1:25 [VAL] 0:60 [A] 2:25 [VAL] 0:60 [A] ✔
1:25 [VAL] 0:86 [A] 2:25 [VAL] 0:86 [A] ✔
1:29 [THR] 0:86 [A] 2:29 [THR] 0:86 [A] ✔
1:29 [THR] 0:87 [C] 2:29 [THR] 0:87 [C] ✔
1:17 [GLN] 0:60 [A] 2:17 [GLN] 0:60 [A] ✔
1:17 [GLN] 0:61 [G] 2:17 [GLN] 0:61 [G] ✔
1:8 [LYS] 0:1676 [G] 2:8 [LYS] 0:1676 [G] ✔
1:8 [LYS] 0:1677 [U] 2:8 [LYS] 0:1677 [U] ✔
1:2 [LYS] 0:1413 [A] 2:2 [LYS] 0:1413 [A] ✔
1:2 [LYS] 0:1414 [A] 2:2 [LYS] 0:1414 [A] ✔
1:2 [LYS] 0:1415 [G] 2:2 [LYS] 0:1415 [G] ✔
1:2 [LYS] 0:1486 [A] 2:2 [LYS] 0:1486 [A] ✔
1:2 [LYS] 0:1676 [G] 2:2 [LYS] 0:1676 [G] ✔
1:22 [PRO] 0:59 [A] 2:22 [PRO] 0:59 [A] ✔
1:22 [PRO] 0:60 [A] 2:22 [PRO] 0:60 [A] ✔
1:46 [ASP] 0:1417 [G] 2:46 [ASP] 0:1417 [G] ✔
1:46 [ASP] 0:1687 [C] 2:46 [ASP] 0:1687 [C] ✔
1:9 [LYS] 0:53 [C] 2:9 [LYS] 0:53 [C] ✔
1:9 [LYS] 0:54 [G] 2:9 [LYS] 0:54 [G] ✔
1:9 [LYS] 0:122 [C] 2:9 [LYS] 0:122 [C] ✔
1:37 [HIS] 0:462 [A] 2:37 [HIS] 0:462 [A] ✔
1:37 [HIS] 0:466 [A] 2:37 [HIS] 0:466 [A] ✔
1:24 [TRP] 0:58 [C] 2:24 [TRP] 0:58 [C] ✔
1:24 [TRP] 0:59 [A] 2:24 [TRP] 0:59 [A] ✔
1:24 [TRP] 0:60 [A] 2:24 [TRP] 0:60 [A] ✔
1:24 [TRP] 0:86 [A] 2:24 [TRP] 0:86 [A] ✔
1:24 [TRP] 0:88 [G] 2:24 [TRP] 0:88 [G] ✔
1:41 [HIS] 0:1418 [U] 2:41 [HIS] 0:1418 [U] ✔
1:41 [HIS] 0:1438 [G] 2:41 [HIS] 0:1438 [G] ✔
1:41 [HIS] 0:1439 [C] 2:41 [HIS] 0:1439 [C] ✔
1:41 [HIS] 0:1440 [U] 2:41 [HIS] 0:1440 [U] ✔
1:4 [SER] 0:121 [U] 2:4 [SER] 0:121 [U] ✔
1:4 [SER] 0:1675 [C] 2:4 [SER] 0:1675 [C] ✔
1:4 [SER] 0:1676 [G] 2:4 [SER] 0:1676 [G] ✔
1:35 [ARG] 0:462 [A] 2:35 [ARG] 0:462 [A] ✔
1:35 [ARG] 0:514 [G] 2:35 [ARG] 0:514 [G] ✔
1:15 [ASP] 0:1418 [U] 2:15 [ASP] 0:1418 [U] ✔
1:1 [GLY] 0:1414 [A] 2:1 [GLY] 0:1414 [A] ✔
1:1 [GLY] 0:1415 [G] 2:1 [GLY] 0:1415 [G] ✔
1:1 [GLY] 0:1417 [G] 2:1 [GLY] 0:1417 [G] ✔
1:1 [GLY] 0:1681 [G] 2:1 [GLY] 0:1681 [G] ✔
1:31 [GLU] 0:513 [A] 2:31 [ARG] 0:513 [A] ✔
1:11 [LEU] 0:1417 [G] 2:11 [LEU] 0:1417 [G] ✔
1:11 [LEU] 0:1418 [U] 2:11 [LEU] 0:1418 [U] ✔
1:30 [ASP] 0:87 [C] 2:30 [ASP] 0:87 [C] ✔
1:38 [LYS] 0:61 [G] 2:38 [LYS] 0:61 [G] ✔
1:38 [LYS] 0:62 [C] 2:38 [LYS] 0:62 [C] ✔
1:38 [LYS] 0:465 [U] 2:38 [LYS] 0:465 [U] ✔
1:38 [LYS] 0:466 [A] 2:38 [LYS] 0:466 [A] ✔
1:27 [LEU] 0:87 [C] 2:27 [LEU] 0:87 [C] ✔
1:27 [LEU] 0:88 [G] 2:27 [LEU] 0:88 [G] ✔
1:39 [ARG] 0:467 [G] 2:39 [ARG] 0:467 [G] ✔
1:39 [ARG] 0:1441 [G] 2:39 [ARG] 0:1441 [G] ✔
1:36 [ASN] 0:60 [A] 2:36 [ASN] 0:60 [A] ✔
1:16 [ASN] 0:60 [A] 2:16 [ASN] 0:60 [A] ✔
1:45 [ASN] 0:467 [G] 2:45 [ASN] 0:467 [G] ✔
1:45 [ASN] 0:1416 [G] 2:45 [ASN] 0:1416 [G] ✔
1:45 [ASN] 0:1417 [G] 2:45 [ASN] 0:1417 [G] ✔
1:5 [LYS] 0:122 [C] 2:5 [LYS] 0:122 [C] ✔
1:5 [LYS] 0:123 [U] 2:5 [LYS] 0:123 [U] ✔
1:5 [LYS] 0:1674 [C] 2:5 [LYS] 0:1674 [C] ✔
1:5 [LYS] 0:1675 [C] 2:5 [LYS] 0:1675 [C] ✔
1:5 [LYS] 0:1676 [G] 2:5 [LYS] 0:1676 [G] ✔
1:28 [LYS] 0:59 [A] 2:28 [LYS] 0:59 [A] ✔
1:28 [LYS] 0:84 [G] 2:28 [LYS] 0:84 [G] ✔
1:28 [LYS] 0:86 [A] 2:28 [LYS] 0:86 [A] ✔
1:28 [LYS] 0:87 [C] 2:28 [LYS] 0:87 [C] ✔
1:28 [LYS] 0:88 [G] 2:28 [LYS] 0:88 [G] ✔
1:13 [LYS] 0:53 [C] 2:13 [LYS] 0:53 [C] ✔
1:13 [LYS] 0:54 [G] 2:13 [LYS] 0:54 [G] ✔
1:20 [ARG] 0:60 [A] 2:20 [ARG] 0:60 [A] ✔
1:20 [ARG] 0:1441 [G] 2:20 [ARG] 0:1441 [G] ✔
1:20 [ARG] 0:1442 [A] 2:20 [ARG] 0:1442 [A] ✔
1:49 [GLU] 0:120 [A] 2:49 [GLU] 0:120 [A] ✔
1:49 [GLU] 0:1416 [G] 2:49 [GLU] 0:1416 [G] ✔
1:42 [TRP] 0:1416 [G] 2:42 [TRP] 0:1416 [G] ✔
1:42 [TRP] 0:1417 [G] 2:42 [TRP] 0:1417 [G] ✔
1:42 [TRP] 0:1418 [U] 2:42 [TRP] 0:1418 [U] ✔
1:42 [TRP] 0:1419 [U] 2:42 [TRP] 0:1419 [U] ✔
1:42 [TRP] 0:1438 [G] 2:42 [TRP] 0:1438 [G] ✔
1:42 [TRP] 0:1439 [C] 2:42 [TRP] 0:1439 [C] ✔
1:42 [TRP] 0:1685 [A] 2:42 [TRP] 0:1685 [A] ✔
1:42 [TRP] 0:1686 [C] 2:42 [TRP] 0:1686 [C] ✔
1:21 [VAL] 0:60 [A] 2:21 [VAL] 0:60 [A] ✔
1:44 [ARG] 0:1690 [C] 2:44 [ARG] 0:1690 [C] ✔
1:44 [ARG] 0:1691 [A] 2:44 [ARG] 0:1691 [A] ✔
1:43 [ARG] 0:1438 [G] 2:43 [ARG] 0:1438 [G] ✔
1:43 [ARG] 0:1684 [A] 2:43 [ARG] 0:1684 [A] ✔
1:43 [ARG] 0:1685 [A] 2:43 [ARG] 0:1685 [A] ✔
1:43 [ARG] 0:1686 [C] 2:43 [ARG] 0:1686 [C] ✔
1:43 [ARG] 0:1691 [A] 2:43 [ARG] 0:1691 [A] ✔
1:46 [ASP] 0:1416 [G] 2:46 [ASP] 0:1416 [G] ❌ 1YHQ_2_0
1:28 [LYS] 0:58 [C] 2:28 [LYS] 0:58 [C] ❌ 1YHQ_2_0
1:20 [ARG] 0:1440 [U] 2:20 [ARG] 0:1440 [U] ❌ 1YHQ_2_0
1:43 [ARG] 0:1690 [C] 2:43 [ARG] 0:1690 [C] ❌ 1YHQ_2_0
1:37 [HIS] 0:465 [U] 2:37 [HIS] 0:465 [U] ❌ 1JJ2_1_0
1:3 [LYS] 0:1678 [A] 2:3 [LYS] 0:1678 [A] ❌ 1YHQ_0:1678 no longer at interface
1:8 [LYS] 0:1446 [U] 2:8 [LYS] 0:1446 [U] ❌ 1YHQ_0:1446 no longer at interface
1:44 [ARG] 0:468 [U] 2:44 [ARG] 0:468 [U] ❌ 1YHQ_0:468 no longer at interface
1:2 [LYS] 0:1452 [G] 2:2 [LYS] 0:1452 [G] ❌ 1JJ2_0:1452 no longer at interface
1:28 [LYS] 0:85 [C] 2:28 [LYS] 0:85 [C] ❌ 1JJ2_0:85 no longer at interface
1:14 [LEU] 0:1418 [U] 2:14 [LEU] 0:1418 [U] ❌ 1YHQ_2:14 no longer at interface
1:48 [ASP] 0:1417 [G] 2:48 [ASP] 0:1417 [G] ❌ 1JJ2_1:48 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L39e Archaeal large subunit ribosomal RNA 1.0 0.29 0.95 0.99 1.0 0.98 0.96 0.99 0.97 0.80 0.58


Other pairs involving 1JJ2_1_0 or 1YHQ_2_0

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_1_0 1VQ8_2_0 0.98 1.0 0.52 0.96 Ribosomal protein L39e Archaeal large subunit ribosomal RNA compare
1JJ2_1_0 1YHQ_2_0 0.99 1.0 0.29 0.95 Ribosomal protein L39e Archaeal large subunit ribosomal RNA compare
1VQ8_2_0 1YHQ_2_0 0.99 1.0 0.33 0.98 Ribosomal protein L39e Archaeal large subunit ribosomal RNA compare
1YHQ_2_0 6AZ3_l_1,2 0.73 0.79 1.93 0.38 Ribosomal protein L39e compare
1JJ2_1_0 6AZ3_l_1,2 0.76 0.79 1.79 0.38 Ribosomal protein L39e compare
1YHQ_2_0 6AZ3_l_7 0.79 0.72 1.34 0.42 Ribosomal protein L39e compare
1JJ2_1_0 6AZ3_l_7 0.63 0.72 1.52 0.42 Ribosomal protein L39e compare
1YHQ_2_0 7O7Y_Bl_B5 0.76 0.94 2.21 0.38 Ribosomal protein L39e compare
1JJ2_1_0 7O7Y_Bl_B5 0.80 0.94 2.12 0.34 Ribosomal protein L39e compare
1YHQ_2_0 7O7Y_Bl_B8 0.72 0.75 1.32 0.36 Ribosomal protein L39e compare
1JJ2_1_0 7O7Y_Bl_B8 0.57 0.75 1.49 0.36 Ribosomal protein L39e compare