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All interfaces > All interologs > Interface groups > group113 > 4YBB_DW_DB vs 7ASM_T_B

Interface analysis


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Common contacts -

4YBB_DW
4YBB_DB
7ASM_T
7ASM_B
Conserved?
DW:19 [ARG] DB:94 [A] T:20 [GLN] B:91 [C] ✔
DW:90 [ASP] DB:75 [G] T:90 [ASP] B:73 [G] ✔
DW:90 [ASP] DB:102 [G] T:90 [ASP] B:99 [G] ✔
DW:39 [ALA] DB:75 [G] T:40 [SER] B:73 [G] ✔
DW:37 [PRO] DB:73 [A] T:38 [ASN] B:71 [A] ✔
DW:37 [PRO] DB:74 [U] T:38 [ASN] B:72 [U] ✔
DW:31 [TYR] DB:73 [A] T:32 [TYR] B:71 [A] ✔
DW:31 [TYR] DB:74 [U] T:32 [TYR] B:72 [U] ✔
DW:31 [TYR] DB:103 [U] T:32 [TYR] B:100 [U] ✔
DW:31 [TYR] DB:104 [A] T:32 [TYR] B:101 [A] ✔
DW:17 [SER] DB:76 [G] T:18 [LEU] B:74 [G] ✔
DW:17 [SER] DB:77 [U] T:18 [LEU] B:75 [U] ✔
DW:92 [VAL] DB:104 [A] T:92 [LEU] B:101 [A] ✔
DW:28 [ALA] DB:75 [G] T:29 [ALA] B:73 [G] ✔
DW:9 [ARG] DB:75 [G] T:9 [ARG] B:73 [G] ✔
DW:9 [ARG] DB:76 [G] T:9 [ARG] B:74 [G] ✔
DW:75 [GLN] DB:103 [U] T:75 [ALA] B:100 [U] ✔
DW:18 [ARG] DB:93 [C] T:19 [LYS] B:90 [U] ✔
DW:13 [GLY] DB:76 [G] T:13 [GLN] B:74 [G] ✔
DW:32 [GLY] DB:104 [A] T:33 [GLY] B:101 [A] ✔
DW:15 [GLY] DB:95 [U] T:15 [ARG] B:92 [C] ✔
DW:78 [GLN] DB:75 [G] T:78 [GLN] B:73 [G] ✔
DW:78 [GLN] DB:76 [G] T:78 [GLN] B:74 [G] ✔
DW:78 [GLN] DB:77 [U] T:78 [GLN] B:75 [U] ✔
DW:27 [PRO] DB:76 [G] T:28 [PRO] B:74 [G] ✔
DW:21 [ARG] DB:76 [G] T:22 [ARG] B:74 [G] ✔
DW:21 [ARG] DB:77 [U] T:22 [ARG] B:75 [U] ✔
DW:88 [HIS] DB:75 [G] T:88 [HIS] B:73 [G] ✔
DW:88 [HIS] DB:76 [G] T:88 [HIS] B:74 [G] ✔
DW:87 [GLN] DB:76 [G] T:87 [THR] B:74 [G] ✔
DW:29 [ILE] DB:74 [U] T:30 [VAL] B:72 [U] ✔
DW:29 [ILE] DB:75 [G] T:30 [VAL] B:73 [G] ✔
DW:19 [ARG] DB:93 [C] T:20 [GLN] B:90 [U] ❌ 7ASM_T_B
DW:19 [ARG] DB:95 [U] T:20 [GLN] B:92 [C] ❌ 7ASM_T_B
DW:12 [GLN] DB:75 [G] T:12 [LYS] B:73 [G] ❌ 7ASM_T_B
DW:12 [GLN] DB:76 [G] T:12 [LYS] B:74 [G] ❌ 7ASM_T_B
DW:90 [ASP] DB:103 [U] T:90 [ASP] B:100 [U] ❌ 7ASM_T_B
DW:75 [GLN] DB:104 [A] T:75 [ALA] B:101 [A] ❌ 7ASM_T_B
DW:18 [ARG] DB:77 [U] T:19 [LYS] B:75 [U] ❌ 7ASM_T_B
DW:18 [ARG] DB:78 [A] T:19 [LYS] B:76 [A] ❌ 7ASM_T_B
DW:18 [ARG] DB:79 [G] T:19 [LYS] B:77 [G] ❌ 7ASM_T_B
DW:13 [GLY] DB:77 [U] T:13 [GLN] B:75 [U] ❌ 7ASM_T_B
DW:13 [GLY] DB:98 [G] T:13 [GLN] B:95 [U] ❌ 7ASM_T_B
DW:14 [LYS] DB:77 [U] T:14 [THR] B:75 [U] ❌ 7ASM_T_B
DW:14 [LYS] DB:78 [A] T:14 [THR] B:76 [A] ❌ 7ASM_T_B
DW:14 [LYS] DB:79 [G] T:14 [THR] B:77 [G] ❌ 7ASM_T_B
DW:14 [LYS] DB:80 [U] T:14 [THR] B:78 [U] ❌ 7ASM_T_B
DW:14 [LYS] DB:97 [C] T:14 [THR] B:94 [C] ❌ 7ASM_T_B
DW:14 [LYS] DB:98 [G] T:14 [THR] B:95 [U] ❌ 7ASM_T_B
DW:15 [GLY] DB:94 [A] T:15 [ARG] B:91 [C] ❌ 7ASM_T_B
DW:87 [GLN] DB:77 [U] T:87 [THR] B:75 [U] ❌ 7ASM_T_B
DW:12 [GLN] DB:98 [G] T:12 [LYS] B:95 [U] ❌ 4YBB_DW_DB
DW:14 [LYS] DB:95 [U] T:14 [THR] B:92 [C] ❌ 4YBB_DW_DB
DW:15 [GLY] DB:78 [A] T:15 [ARG] B:76 [A] ❌ 4YBB_DW_DB
DW:15 [GLY] DB:77 [U] T:15 [ARG] B:75 [U] ❌ 4YBB_DW_DB
DW:15 [GLY] DB:80 [U] T:15 [ARG] B:78 [U] ❌ 4YBB_DW_DB
DW:15 [GLY] DB:79 [G] T:15 [ARG] B:77 [G] ❌ 4YBB_DW_DB
DW:15 [GLY] DB:97 [C] T:15 [ARG] B:94 [C] ❌ 4YBB_DW_DB
DW:18 [ARG] DB:94 [A] T:19 [LYS] B:91 [C] ❌ 4YBB_DW_DB
DW:18 [ARG] DB:92 [C] T:19 [LYS] B:89 [U] ❌ 7ASM_B:89 no longer at interface
DW:14 [LYS] DB:96 [G] T:14 [THR] B:93 [G] ❌ 4YBB_DB:96 no longer at interface
DW:15 [GLY] DB:96 [G] T:15 [ARG] B:93 [G] ❌ 4YBB_DB:96 no longer at interface
DW:76 [ASP] DB:102 [G] T:76 [ASP] B:99 [G] ❌ 7ASM_T:76 no longer at interface
DW:76 [ASP] DB:103 [U] T:76 [ASP] B:100 [U] ❌ 7ASM_T:76 no longer at interface
DW:33 [GLY] DB:104 [A] T:34 [TYR] B:101 [A] ❌ 7ASM_T:34 no longer at interface
DW:16 [ALA] DB:95 [U] T:17 [ASP] B:92 [C] ❌ 4YBB_DW:16 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L25-like 5S ribosomal RNA 0.9 2.27 0.38 0.82 0.86 0.92 0.94 0.61 0.66 0.29 0.21


Other pairs involving 4YBB_DW_DB or 7ASM_T_B

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DFU_P_M,N 4YBB_DW_DB 0.97 0.83 0.3 0.53 Ribosomal protein L25-like compare
6S0Z_T_B 7ASM_T_B 0.96 0.99 0.47 1.0 Ribosomal protein L25-like 5S ribosomal RNA compare
6YSI_R_5 7ASM_T_B 0.65 0.9 2.0 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
1FEU_A_B,C 7ASM_T_B 0.63 0.54 0.97 0.29 Ribosomal protein L25-like compare
1FEU_A_B,C 4YBB_DW_DB 0.68 0.54 1.06 0.25 Ribosomal protein L25-like compare
4Y4O_1Z_1B 7ASM_T_B 0.61 0.88 1.55 0.35 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 4YBB_DW_DB 0.66 0.87 1.58 0.26 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 7RYG_U_B 0.91 0.93 1.12 0.86 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6S0Z_T_B 0.64 0.91 2.15 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 7ASM_T_B 0.61 0.9 2.27 0.38 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6YSI_R_5 0.92 0.97 0.56 0.83 Ribosomal protein L25-like 5S ribosomal RNA compare