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All interfaces > All interologs > Interface groups > group114 > 3ZGZ_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3ZGZ_A
3ZGZ_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:43 [TYR] B:76 [A] 3.45 96.02
A:80 [ASP] B:76 [A] 3.31 99.0
A:82 [PHE] B:76 [A] 4.8 98.17
A:83 [GLY] B:76 [A] 3.41 98.89
A:84 [LEU] B:75 [C] 3.7 94.59
A:84 [LEU] B:76 [A] 2.73 94.59
A:85 [PRO] B:75 [C] 4.35 98.48
A:85 [PRO] B:76 [A] 3.96 98.48
A:156 [VAL] B:74 [C] 3.42 88.63
A:157 [ASN] B:74 [C] 3.99 sugar:SC 94.78
A:165 [VAL] B:74 [C] 3.84 90.29
A:166 [LEU] B:74 [C] 4.11 93.04
A:167 [ALA] B:74 [C] 3.36 95.17
A:167 [ALA] B:75 [C] 3.68 95.17
A:168 [ASN] B:73 [A] 4.2 93.98
A:168 [ASN] B:74 [C] 2.82 sugar:BB 93.98
A:168 [ASN] B:75 [C] 3.68 93.98
A:169 [GLU] B:74 [C] 4.52 96.74
A:169 [GLU] B:75 [C] 2.91 96.74
A:190 [GLN] B:74 [C] 2.75 base:SC 95.0
A:215 [THR] B:4 [C] 3.63 B:69 [G] 39.54
A:215 [THR] B:5 [G] 3.68 B:68 [C] 39.54
A:218 [THR] B:3 [C] 4.5 B:70 [G] 43.7
A:218 [THR] B:4 [C] 3.68 B:69 [G] 43.7
A:219 [MET] B:3 [C] 4.01 B:70 [G] 79.14
A:219 [MET] B:4 [C] 3.24 B:69 [G] 79.14
A:219 [MET] B:70 [G] 3.67 B:3 [C] 79.14
A:222 [ASN] B:3 [C] 2.89 B:70 [G] sugar:SC 85.05
A:222 [ASN] B:4 [C] 4.03 B:69 [G] 85.05
A:223 [TRP] B:71 [G] 4.43 B:2 [C] 90.4
A:223 [TRP] B:72 [C] 3.72 B:1 [G] 90.4
A:223 [TRP] B:73 [A] 3.39 base/AA stacks 90.4
A:291 [ALA] B:73 [A] 3.69 33.11
A:292 [GLU] B:1 [G] 3.3 B:72 [C] 48.71
A:292 [GLU] B:2 [C] 4.46 B:71 [G] 48.71
A:292 [GLU] B:72 [C] 2.68 B:1 [G] 48.71
A:292 [GLU] B:73 [A] 2.91 48.71
A:293 [ALA] B:1 [G] 3.59 B:72 [C] 70.17
A:293 [ALA] B:72 [C] 3.62 B:1 [G] 70.17
A:293 [ALA] B:73 [A] 4.89 70.17
A:296 [ALA] B:1 [G] 3.32 B:72 [C] 9.73
A:297 [THR] B:1 [G] 4.03 B:72 [C] 5.41
A:416 [ARG] B:72 [C] 4.17 B:1 [G] 77.08
A:416 [ARG] B:73 [A] 2.95 base:BB 77.08
A:417 [LEU] B:73 [A] 3.7 83.76
A:418 [ARG] B:73 [A] 2.94 base:BB, sugar:SC base/AA stacks 89.02
A:419 [ASP] B:73 [A] 4.88 97.79
A:421 [GLY] B:74 [C] 4.29 66.97
A:423 [SER] B:74 [C] 3.51 97.48
A:424 [ARG] B:74 [C] 3.06 base/AA stacks 98.97
A:425 [GLN] B:74 [C] 2.51 base:SC 98.92
A:426 [ARG] B:74 [C] 3.41 base:SC 98.72
A:426 [ARG] B:75 [C] 4.88 98.72
A:426 [ARG] B:76 [A] 3.3 98.72
A:491 [ASP] B:74 [C] 4.57 94.64
A:492 [THR] B:76 [A] 3.78 90.04
A:493 [PHE] B:76 [A] 3.39 90.04
A:496 [SER] B:76 [A] 4.99 98.83
A:531 [ILE] B:70 [G] 3.97 B:3 [C] 66.48
A:532 [GLU] B:70 [G] 3.35 B:3 [C] 93.43
A:532 [GLU] B:71 [G] 3.59 B:2 [C] 93.43
A:532 [GLU] B:76 [A] 3.77 93.43
A:533 [HIS] B:76 [A] 3.26 98.06
A:535 [ILE] B:71 [G] 3.96 B:2 [C] 76.42
A:536 [MET] B:72 [C] 4.03 B:1 [G] 60.11
A:536 [MET] B:73 [A] 3.44 60.11
A:536 [MET] B:74 [C] 4.18 60.11
A:536 [MET] B:76 [A] 4.47 60.11
A:540 [TYR] B:74 [C] 4.63 93.59
A:568 [MET] B:70 [G] 3.93 B:3 [C] 86.56
A:570 [LEU] B:69 [G] 3.63 B:4 [C] 65.9
A:570 [LEU] B:70 [G] 4.62 B:3 [C] 65.9
A:600 [ARG] B:67 [C] 4.7 B:6 [G] 36.7
A:600 [ARG] B:68 [C] 3.83 B:5 [G] 36.7
A:615 [THR] B:69 [G] 4.51 B:4 [C] 50.51
A:616 [GLY] B:69 [G] 3.83 B:4 [C] 58.43
A:617 [MET] B:69 [G] 2.74 B:4 [C] 45.39
A:617 [MET] B:70 [G] 4.8 B:3 [C] 45.39
A:618 [SER] B:69 [G] 3.85 B:4 [C] 60.95
A:618 [SER] B:70 [G] 3.38 B:3 [C] 60.95
A:619 [LYS] B:69 [G] 4.17 B:4 [C] 90.86
A:619 [LYS] B:70 [G] 3.06 B:3 [C] 90.86
A:619 [LYS] B:71 [G] 2.47 B:2 [C] 90.86
A:619 [LYS] B:75 [C] 2.98 base:SC 90.86
A:619 [LYS] B:76 [A] 3.9 90.86
A:621 [SER] B:75 [C] 4.83 97.95
A:622 [LYS] B:75 [C] 3.67 98.81
A:622 [LYS] B:76 [A] 3.19 98.81
A:623 [SER] B:75 [C] 4.49 96.16
A:648 [PHE] B:12 [G] 3.85 B:23 [C] 87.89
A:648 [PHE] B:23 [C] 3.66 B:12 [G] 87.89
A:648 [PHE] B:24 [A] 3.77 B:11 [U] 87.89
A:649 [ALA] B:12 [G] 2.63 B:23 [C] sugar:BB 71.4
A:649 [ALA] B:13 [G] 3.38 B:22 [A] 71.4
A:650 [SER] B:12 [G] 4.65 B:23 [C] 80.76
A:650 [SER] B:13 [G] 3.59 B:22 [A] 80.76
A:651 [PRO] B:13 [G] 3.65 B:22 [A] 89.73
A:651 [PRO] B:14 [A] 3.45 B:8 [U] 89.73
A:654 [MET] B:13 [G] 3.86 B:22 [A] 43.2
A:654 [MET] B:14 [A] 3.02 B:8 [U] 43.2
A:655 [THR] B:13 [G] 4.08 B:22 [A] 61.69
A:655 [THR] B:69 [G] 4.16 B:4 [C] 61.69
A:656 [LEU] B:12 [G] 4.53 B:23 [C] 51.14
A:656 [LEU] B:13 [G] 4.57 B:22 [A] 51.14
A:659 [GLN] B:11 [U] 3.09 B:24 [A] sugar:SC 69.85
A:659 [GLN] B:12 [G] 3.71 B:23 [C] 69.85
A:661 [SER] B:25 [C] 3.99 B:10 [G] 34.94
A:662 [GLY] B:24 [A] 4.51 B:11 [U] 63.43
A:662 [GLY] B:25 [C] 3.18 B:10 [G] 63.43
A:664 [GLU] B:25 [C] 4.08 B:10 [G] 39.98
A:664 [GLU] B:26 [A] 3.97 B:44 [C] 39.98
A:665 [GLY] B:24 [A] 3.71 B:11 [U] 87.71
A:665 [GLY] B:25 [C] 3.48 B:10 [G] 87.71
A:668 [ARG] B:24 [A] 4.89 B:11 [U] 82.35
A:668 [ARG] B:25 [C] 2.81 B:10 [G] 82.35
A:668 [ARG] B:26 [A] 2.9 B:44 [C] 82.35
A:671 [LYS] B:39 [U] 4.59 B:31 [A] 57.21
A:672 [ARG] B:24 [A] 3.85 B:11 [U] 83.36
A:672 [ARG] B:40 [C] 4.16 B:30 [G] 83.36
A:675 [LYS] B:39 [U] 3.79 B:31 [A] 43.57
A:675 [LYS] B:40 [C] 4.68 B:30 [G] 43.57
A:711 [LYS] B:16 [U] 2.96 53.73
A:714 [ASP] B:16 [U] 3.91 31.85
A:715 [ASP] B:16 [U] 4.37 62.35
A:718 [ARG] B:16 [U] 3.05 base:SC 47.19
A:719 [ARG] B:15 [A] 2.86 B:48 [U] 38.65
A:719 [ARG] B:16 [U] 3.31 base/AA stacks 38.65
A:723 [ASN] B:13 [G] 3.24 B:22 [A] 96.99
A:723 [ASN] B:14 [A] 2.89 B:8 [U] 96.99
A:724 [THR] B:14 [A] 3.36 B:8 [U] 86.09
A:724 [THR] B:15 [A] 3.83 B:48 [U] 86.09
A:727 [ALA] B:22 [A] 3.7 B:13 [G] 85.82
A:727 [ALA] B:23 [C] 3.82 B:12 [G] 85.82
A:730 [MET] B:23 [C] 3.15 B:12 [G] 89.95
A:730 [MET] B:24 [A] 4.29 B:11 [U] 89.95
A:731 [GLU] B:22 [A] 4.12 B:13 [G] 67.61
A:731 [GLU] B:23 [C] 3.55 B:12 [G] 67.61
A:734 [ASN] B:23 [C] 3.88 B:12 [G] 92.77
A:734 [ASN] B:24 [A] 2.96 B:11 [U] 92.77
A:738 [LYS] B:41 [C] 4.57 B:29 [G] 48.09
A:801 [LEU] B:20 [U] 3.92 39.86
A:803 [VAL] B:20 [U] 3.58 55.68
A:805 [GLN] B:19 [G] 4.47 B:56 [C] 82.63
A:805 [GLN] B:20 [U] 3.82 82.63
A:805 [GLN] B:20A [A] 4.24 82.63
A:808 [GLY] B:20A [A] 4.82 92.63
A:809 [LYS] B:47G [G] 4.96 94.31
A:809 [LYS] B:47H [C] 3.02 94.31
A:809 [LYS] B:47I [U] 3.35 94.31
A:810 [VAL] B:20 [U] 3.68 10.48
A:810 [VAL] B:20A [A] 4.1 10.48
A:811 [ARG] B:47G [G] 4.35 84.62
A:811 [ARG] B:47H [C] 3.0 84.62
A:813 [LYS] B:20 [U] 2.83 base:SC 42.9
A:833 [HIS] B:47F [C] 3.82 32.9
A:834 [LEU] B:47F [C] 4.56 40.74
A:834 [LEU] B:47G [G] 3.62 40.74
A:837 [LYS] B:47F [C] 3.43 54.92
A:837 [LYS] B:47G [G] 2.49 54.92
A:838 [TYR] B:47G [G] 2.99 15.33
A:838 [TYR] B:47H [C] 4.08 15.33
A:846 [LYS] B:56 [C] 3.63 B:19 [G] 0.0
A:848 [ILE] B:19 [G] 3.74 B:56 [C] 0.0
A:848 [ILE] B:56 [C] 3.47 B:19 [G] 0.0
A:850 [VAL] B:19 [G] 3.48 B:56 [C] 0.0
A:854 [LEU] B:19 [G] 3.94 B:56 [C] 73.15
A:854 [LEU] B:20 [U] 4.42 73.15
A:856 [ASN] B:19 [G] 4.11 B:56 [C] 0.0
A:856 [ASN] B:56 [C] 3.19 B:19 [G] base:SC 0.0
A:858 [VAL] B:56 [C] 3.9 B:19 [G] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group114 3ZGZ_A_B A: Leucine--tRNA ligase, Escherichia coli (genetically engineered) B: tRNA-leu uaa isoacceptor, Escherichia coli k-12 (synthetic) P07813 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & HUP domains & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA ✘

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1U0B_B_A 3ZGZ_A_B 0.33 0.69 2.56 0.06 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA compare
3ZGZ_A_B 3ZJT_A_B 0.47 0.9 3.08 0.61 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
3ZGZ_A_B 3ZJV_A_B 0.58 0.92 2.97 0.66 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
3ZGZ_A_B 4CQN_A_B 0.95 0.99 0.65 0.95 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & HUP domains & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
3ZGZ_A_B 4ARC_A_B 0.59 0.9 3.25 0.5 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
3ZGZ_A_B 5AH5_B_D 0.38 0.87 3.47 0.21 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related tRNA compare