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All interfaces > All interologs > Interface groups > group114 > 4ARC_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4ARC_A
4ARC_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:227 [SER] B:76 [A] 2.98 86.79
A:246 [TYR] B:76 [A] 3.17 84.64
A:247 [THR] B:76 [A] 3.62 94.26
A:248 [THR] B:76 [A] 2.81 92.17
A:249 [ARG] B:76 [A] 3.82 82.9
A:324 [ASN] B:74 [C] 3.25 86.34
A:325 [PHE] B:74 [C] 2.7 sugar:BB 78.79
A:325 [PHE] B:76 [A] 3.5 78.79
A:326 [VAL] B:74 [C] 4.94 92.78
A:326 [VAL] B:76 [A] 3.76 92.78
A:327 [LEU] B:74 [C] 4.57 79.88
A:327 [LEU] B:75 [C] 3.84 79.88
A:327 [LEU] B:76 [A] 2.88 base:BB, base:BB 79.88
A:330 [TYR] B:75 [C] 3.05 77.66
A:330 [TYR] B:76 [A] 2.57 base:BB 77.66
A:331 [GLY] B:76 [A] 4.48 93.16
A:333 [GLY] B:76 [A] 4.18 91.54
A:334 [ALA] B:76 [A] 4.49 90.8
A:335 [VAL] B:76 [A] 3.68 81.86
A:336 [MET] B:76 [A] 4.68 89.56
A:342 [ASP] B:76 [A] 4.26 94.76
A:344 [ARG] B:74 [C] 3.26 sugar:SC 91.43
A:344 [ARG] B:75 [C] 3.4 91.43
A:344 [ARG] B:76 [A] 2.64 base:SC, sugar:SC 91.43
A:345 [ASP] B:76 [A] 4.71 96.83
A:416 [ARG] B:75 [C] 3.12 base/AA stacks 76.68
A:418 [ARG] B:75 [C] 2.94 base:SC 91.35
A:595 [ARG] B:26 [A] 3.04 B:44 [C] sugar:SC 30.67
A:595 [ARG] B:27 [A] 4.26 B:43 [U] 30.67
A:596 [ASP] B:28 [G] 4.68 B:42 [C] 48.83
A:597 [GLU] B:27 [A] 4.57 B:43 [U] 44.35
A:598 [LYS] B:10 [G] 3.2 B:25 [C] 61.9
A:598 [LYS] B:26 [A] 4.92 B:44 [C] 61.9
A:598 [LYS] B:45 [G] 4.95 B:47 [U] 61.9
A:598 [LYS] B:46 [G] 3.93 B:47 [C] 61.9
A:599 [GLY] B:26 [A] 4.32 B:44 [C] 58.44
A:599 [GLY] B:27 [A] 4.4 B:43 [U] 58.44
A:600 [ARG] B:10 [G] 3.57 B:25 [C] 29.1
A:648 [PHE] B:12 [G] 4.38 B:23 [C] 90.38
A:648 [PHE] B:23 [C] 3.46 B:12 [G] 90.38
A:648 [PHE] B:24 [A] 3.59 B:11 [U] 90.38
A:649 [ALA] B:12 [G] 3.33 B:23 [C] sugar:BB 76.92
A:649 [ALA] B:13 [G] 4.45 B:22 [A] 76.92
A:650 [SER] B:13 [G] 3.74 B:22 [A] 83.8
A:651 [PRO] B:13 [G] 4.05 B:22 [A] 91.29
A:651 [PRO] B:14 [A] 3.53 B:8 [U] 91.29
A:654 [MET] B:6 [G] 4.28 B:67 [C] 53.96
A:655 [THR] B:13 [G] 3.92 B:22 [A] 68.58
A:657 [GLU] B:11 [U] 4.69 B:24 [A] 69.15
A:657 [GLU] B:12 [G] 3.23 B:23 [C] 69.15
A:661 [SER] B:25 [C] 2.44 B:10 [G] sugar:SC 34.26
A:661 [SER] B:26 [A] 3.71 B:44 [C] 34.26
A:662 [GLY] B:25 [C] 4.33 B:10 [G] 67.39
A:664 [GLU] B:26 [A] 4.86 B:44 [C] 38.38
A:665 [GLY] B:24 [A] 4.62 B:11 [U] 90.36
A:665 [GLY] B:25 [C] 3.76 B:10 [G] 90.36
A:668 [ARG] B:25 [C] 2.95 B:10 [G] 84.28
A:668 [ARG] B:26 [A] 4.26 B:44 [C] 84.28
A:668 [ARG] B:39 [U] 3.89 B:31 [A] 84.28
A:671 [LYS] B:39 [U] 4.27 B:31 [A] 55.02
A:672 [ARG] B:24 [A] 4.58 B:11 [U] 83.73
A:672 [ARG] B:40 [C] 3.4 B:30 [G] 83.73
A:675 [LYS] B:39 [U] 4.38 B:31 [A] 42.98
A:675 [LYS] B:40 [C] 3.22 B:30 [G] 42.98
A:711 [LYS] B:16 [U] 3.28 base:SC 59.26
A:714 [ASP] B:16 [U] 3.75 28.77
A:715 [ASP] B:16 [U] 4.34 68.22
A:718 [ARG] B:16 [U] 3.16 base:SC 29.51
A:719 [ARG] B:15 [A] 2.76 B:48 [U] 37.73
A:719 [ARG] B:16 [U] 3.42 base/AA stacks 37.73
A:723 [ASN] B:13 [G] 3.43 B:22 [A] 97.95
A:723 [ASN] B:14 [A] 2.98 B:8 [U] 97.95
A:724 [THR] B:14 [A] 3.54 B:8 [U] 88.75
A:724 [THR] B:15 [A] 4.56 B:48 [U] 88.75
A:724 [THR] B:22 [A] 4.63 B:13 [G] 88.75
A:727 [ALA] B:22 [A] 3.55 B:13 [G] 87.49
A:727 [ALA] B:23 [C] 3.58 B:12 [G] 87.49
A:730 [MET] B:23 [C] 3.19 B:12 [G] 92.14
A:730 [MET] B:24 [A] 3.94 B:11 [U] 92.14
A:731 [GLU] B:22 [A] 2.51 B:13 [G] sugar:SC 73.65
A:731 [GLU] B:23 [C] 3.52 B:12 [G] 73.65
A:734 [ASN] B:23 [C] 3.99 B:12 [G] 93.05
A:734 [ASN] B:24 [A] 2.99 B:11 [U] 93.05
A:737 [ALA] B:41 [C] 4.09 B:29 [G] 6.83
A:738 [LYS] B:41 [C] 4.47 B:29 [G] 45.4
A:738 [LYS] B:42 [C] 3.06 B:28 [G] 45.4
A:801 [LEU] B:20 [U] 3.56 55.88
A:803 [VAL] B:20 [U] 3.49 61.82
A:805 [GLN] B:19 [G] 3.31 B:56 [C] base:SC 85.82
A:805 [GLN] B:20 [U] 4.89 85.82
A:805 [GLN] B:56 [C] 4.99 B:19 [G] 85.82
A:805 [GLN] B:57 [A] 4.96 85.82
A:807 [ASN] B:56 [C] 4.46 B:19 [G] 94.57
A:808 [GLY] B:56 [C] 4.15 B:19 [G] 92.56
A:808 [GLY] B:57 [A] 4.27 92.56
A:809 [LYS] B:47H [C] 3.78 92.78
A:809 [LYS] B:47I [U] 3.16 92.78
A:810 [VAL] B:20 [U] 3.88 32.95
A:810 [VAL] B:20A [A] 4.22 32.95
A:810 [VAL] B:47G [G] 4.23 32.95
A:811 [ARG] B:47G [G] 2.77 86.18
A:811 [ARG] B:47H [C] 2.86 86.18
A:813 [LYS] B:20 [U] 3.12 base:SC 35.67
A:834 [LEU] B:47E [G] 3.76 43.93
A:834 [LEU] B:47F [C] 3.58 43.93
A:837 [LYS] B:47G [G] 4.66 58.34
A:838 [TYR] B:47G [G] 3.53 21.69
A:838 [TYR] B:47H [C] 3.86 21.69
A:846 [LYS] B:56 [C] 3.42 B:19 [G] 80.78
A:848 [ILE] B:19 [G] 4.0 B:56 [C] 87.99
A:848 [ILE] B:56 [C] 3.6 B:19 [G] 87.99
A:850 [VAL] B:19 [G] 4.03 B:56 [C] 81.48
A:853 [LYS] B:19 [G] 2.83 B:56 [C] 84.66
A:854 [LEU] B:19 [G] 3.41 B:56 [C] 74.27
A:856 [ASN] B:19 [G] 4.07 B:56 [C] 92.28
A:856 [ASN] B:56 [C] 2.7 B:19 [G] base:SC, sugar:SC 92.28
A:856 [ASN] B:57 [A] 4.63 92.28
A:858 [VAL] B:56 [C] 3.84 B:19 [G] 86.65

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group114 4ARC_A_B A: Leucine--tRNA ligase, Escherichia coli (genetically engineered) B: tRNA-leu5 (uaa isoacceptor), Escherichia coli (synthetic) P07813 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3ZJT_A_B 4ARC_A_B 0.97 1.0 0.25 0.85 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
4ARC_A_B 4CQN_A_B 0.59 0.9 3.86 0.53 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
4ARC_A_B 5AH5_B_D 0.51 0.85 2.73 0.32 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related tRNA compare
3ZGZ_A_B 4ARC_A_B 0.59 0.9 3.25 0.5 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
3ZJV_A_B 4ARC_A_B 0.87 0.96 1.3 0.83 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare