Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
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InterfaceRNA
Protein
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Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
5AH5_B
|
5AH5_D
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
B:212 [THR] | D:4 [C] | 4.21 | D:69 [G] | 70.6 | ||
B:212 [THR] | D:5 [G] | 3.34 | D:68 [C] | 70.6 | ||
B:213 [SER] | D:4 [C] | 4.09 | D:69 [G] | 42.1 | ||
B:213 [SER] | D:5 [G] | 4.96 | D:68 [C] | 42.1 | ||
B:216 [ASN] | D:3 [C] | 2.7 | D:70 [G] | base:SC, sugar:SC | 42.87 | |
B:216 [ASN] | D:4 [C] | 3.12 | D:69 [G] | 42.87 | ||
B:216 [ASN] | D:70 [G] | 3.89 | D:3 [C] | 42.87 | ||
B:217 [ILE] | D:70 [G] | 4.2 | D:3 [C] | 75.92 | ||
B:217 [ILE] | D:71 [G] | 4.03 | D:2 [C] | 75.92 | ||
B:220 [ASN] | D:3 [C] | 3.79 | D:70 [G] | base:SC, sugar:SC | 87.63 | |
B:220 [ASN] | D:70 [G] | 4.83 | D:3 [C] | 87.63 | ||
B:220 [ASN] | D:71 [G] | 3.39 | D:2 [C] | base:SC | 87.63 | |
B:220 [ASN] | D:72 [C] | 3.91 | D:1 [G] | 87.63 | ||
B:221 [TRP] | D:72 [C] | 3.47 | D:1 [G] | 87.93 | ||
B:244 [PHE] | D:76 [A] | 3.38 | 77.39 | |||
B:245 [THR] | D:76 [A] | 2.71 | 90.82 | |||
B:246 [THR] | D:76 [A] | 2.89 | 85.35 | |||
B:247 [ARG] | D:76 [A] | 3.78 | 73.18 | |||
B:294 [ARG] | D:74 [C] | 3.77 | 74.57 | |||
B:295 [SER] | D:74 [C] | 3.12 | 6.16 | |||
B:296 [ALA] | D:74 [C] | 2.76 | 33.91 | |||
B:297 [GLY] | D:74 [C] | 3.24 | 43.62 | |||
B:298 [ALA] | D:74 [C] | 3.11 | 69.89 | |||
B:299 [LYS] | D:74 [C] | 3.68 | 78.06 | |||
B:323 [ASN] | D:74 [C] | 3.47 | 75.84 | |||
B:324 [TYR] | D:74 [C] | 2.79 | sugar:BB | 71.34 | ||
B:324 [TYR] | D:76 [A] | 3.74 | 71.34 | |||
B:325 [VAL] | D:76 [A] | 3.69 | 86.41 | |||
B:326 [MET] | D:74 [C] | 3.24 | 66.51 | |||
B:326 [MET] | D:75 [C] | 4.02 | 66.51 | |||
B:326 [MET] | D:76 [A] | 2.93 | base:BB, base:BB | 66.51 | ||
B:328 [ASP] | D:75 [C] | 4.46 | 55.44 | |||
B:329 [PHE] | D:75 [C] | 3.05 | base/AA stacks | 67.78 | ||
B:329 [PHE] | D:76 [A] | 3.12 | 67.78 | |||
B:332 [GLY] | D:76 [A] | 4.41 | 84.05 | |||
B:333 [ALA] | D:76 [A] | 4.35 | 85.55 | |||
B:334 [VAL] | D:76 [A] | 3.41 | 78.9 | |||
B:341 [ASP] | D:76 [A] | 3.49 | sugar:SC | 89.12 | ||
B:343 [ARG] | D:74 [C] | 3.68 | 85.2 | |||
B:343 [ARG] | D:75 [C] | 3.19 | 85.2 | |||
B:343 [ARG] | D:76 [A] | 3.08 | base:SC | 85.2 | ||
B:411 [ARG] | D:72 [C] | 2.89 | D:1 [G] | 75.55 | ||
B:411 [ARG] | D:73 [A] | 2.98 | 75.55 | |||
B:601 [PHE] | D:12 [G] | 4.27 | D:23 [C] | 82.53 | ||
B:601 [PHE] | D:23 [C] | 3.52 | D:12 [G] | 82.53 | ||
B:601 [PHE] | D:24 [A] | 3.48 | D:11 [U] | 82.53 | ||
B:602 [LYS] | D:12 [G] | 2.66 | D:23 [C] | sugar:BB | 70.11 | |
B:603 [THR] | D:12 [G] | 3.8 | D:23 [C] | 82.99 | ||
B:603 [THR] | D:13 [A] | 2.96 | D:21 [A] | 82.99 | ||
B:604 [THR] | D:13 [A] | 3.44 | D:21 [A] | 87.54 | ||
B:604 [THR] | D:14 [A] | 2.75 | D:8 [U] | 87.54 | ||
B:607 [ALA] | D:13 [A] | 4.03 | D:21 [A] | 46.98 | ||
B:608 [PRO] | D:13 [A] | 4.78 | D:21 [A] | 59.48 | ||
B:618 [ALA] | D:25 [C] | 3.78 | D:10 [G] | 85.8 | ||
B:621 [SER] | D:39 [U] | 4.22 | D:31 [A] | 82.42 | ||
B:625 [ARG] | D:40 [G] | 2.94 | D:30 [C] | 87.17 | ||
B:625 [ARG] | D:41 [C] | 2.92 | D:29 [G] | 87.17 | ||
B:628 [ARG] | D:39 [U] | 3.26 | D:31 [A] | 36.5 | ||
B:628 [ARG] | D:40 [G] | 3.19 | D:30 [C] | 36.5 | ||
B:667 [GLY] | D:16 [U] | 4.55 | 49.16 | |||
B:671 [ALA] | D:16 [U] | 3.86 | 29.58 | |||
B:672 [ASP] | D:15 [A] | 4.07 | D:48 [U] | 63.15 | ||
B:675 [ARG] | D:15 [A] | 3.26 | D:48 [U] | 38.95 | ||
B:675 [ARG] | D:16 [U] | 3.01 | 38.95 | |||
B:677 [HIS] | D:14 [A] | 4.84 | D:8 [U] | 56.0 | ||
B:677 [HIS] | D:15 [A] | 2.94 | D:48 [U] | 56.0 | ||
B:679 [ASN] | D:13 [A] | 3.56 | D:21 [A] | 94.17 | ||
B:679 [ASN] | D:14 [A] | 3.23 | D:8 [U] | 94.17 | ||
B:680 [ALA] | D:14 [A] | 3.5 | D:8 [U] | 81.91 | ||
B:680 [ALA] | D:15 [A] | 3.59 | D:48 [U] | 81.91 | ||
B:683 [ALA] | D:22 [A] | 3.44 | 86.5 | |||
B:683 [ALA] | D:23 [C] | 3.47 | D:12 [G] | 86.5 | ||
B:686 [MET] | D:23 [C] | 2.87 | D:12 [G] | 90.61 | ||
B:686 [MET] | D:24 [A] | 3.74 | D:11 [U] | 90.61 | ||
B:687 [SER] | D:22 [A] | 4.54 | 48.03 | |||
B:687 [SER] | D:23 [C] | 3.23 | D:12 [G] | 48.03 | ||
B:690 [ASN] | D:23 [C] | 3.75 | D:12 [G] | 91.35 | ||
B:690 [ASN] | D:24 [A] | 2.81 | D:11 [U] | 91.35 | ||
B:690 [ASN] | D:41 [C] | 4.9 | D:29 [G] | 91.35 | ||
B:693 [TYR] | D:40 [G] | 4.2 | D:30 [C] | 17.16 | ||
B:693 [TYR] | D:41 [C] | 3.4 | D:29 [G] | 17.16 | ||
B:694 [GLU] | D:41 [C] | 4.42 | D:29 [G] | 46.15 | ||
B:755 [VAL] | D:20 [U] | 3.5 | 44.75 | |||
B:757 [PRO] | D:20 [U] | 3.34 | 46.01 | |||
B:759 [GLN] | D:19 [G] | 3.02 | D:56 [C] | base:SC | 75.22 | |
B:759 [GLN] | D:20 [U] | 4.63 | 75.22 | |||
B:759 [GLN] | D:56 [C] | 4.98 | D:19 [G] | 75.22 | ||
B:759 [GLN] | D:57 [A] | 4.1 | 75.22 | |||
B:761 [ASN] | D:56 [C] | 4.11 | D:19 [G] | 92.55 | ||
B:761 [ASN] | D:57 [A] | 4.28 | 92.55 | |||
B:762 [GLY] | D:56 [C] | 4.19 | D:19 [G] | 84.87 | ||
B:762 [GLY] | D:57 [A] | 3.81 | 84.87 | |||
B:763 [LYS] | D:46F [G] | 4.09 | 86.95 | |||
B:763 [LYS] | D:46G [C] | 3.89 | 86.95 | |||
B:764 [LEU] | D:20 [U] | 3.57 | 27.03 | |||
B:764 [LEU] | D:20A [A] | 4.02 | 27.03 | |||
B:767 [THR] | D:20 [U] | 3.71 | 30.88 | |||
B:792 [ARG] | D:46E [G] | 4.75 | 0.42 | |||
B:792 [ARG] | D:46F [G] | 3.46 | 0.42 | |||
B:802 [ARG] | D:19 [G] | 3.53 | D:56 [C] | 82.2 | ||
B:802 [ARG] | D:56 [C] | 3.34 | D:19 [G] | base/AA stacks | 82.2 | |
B:804 [VAL] | D:19 [G] | 3.78 | D:56 [C] | 77.9 | ||
B:807 [ARG] | D:17 [C] | 3.24 | base/AA stacks | 74.83 | ||
B:807 [ARG] | D:19 [G] | 3.14 | D:56 [C] | 74.83 | ||
B:808 [ILE] | D:19 [G] | 3.68 | D:56 [C] | 72.95 | ||
B:808 [ILE] | D:20 [U] | 3.92 | 72.95 | |||
B:810 [ASN] | D:19 [G] | 3.78 | D:56 [C] | 91.03 | ||
B:810 [ASN] | D:56 [C] | 2.75 | D:19 [G] | base:SC, sugar:SC | 91.03 | |
B:810 [ASN] | D:57 [A] | 4.24 | 91.03 | |||
B:812 [VAL] | D:56 [C] | 3.87 | D:19 [G] | 84.39 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group114 | 5AH5_B_D | B: Leucine--tRNA ligase, Agrobacterium radiobacter k84 (genetically engineered) D: tRNA-leu taa isoacceptor, Agrobacterium tumefaciens (genetically engineered) | B9JQP8 | acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related | tRNA | ✘ |
Interologs
Total number of interologs for this interface: 5