RNAprotDB

All interfaces > All interologs > Interface groups > group114 > 5AH5_B_D

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

5AH5_B
5AH5_D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:212 [THR] D:4 [C] 4.21 D:69 [G] 70.6
B:212 [THR] D:5 [G] 3.34 D:68 [C] 70.6
B:213 [SER] D:4 [C] 4.09 D:69 [G] 42.1
B:213 [SER] D:5 [G] 4.96 D:68 [C] 42.1
B:216 [ASN] D:3 [C] 2.7 D:70 [G] base:SC, sugar:SC 42.87
B:216 [ASN] D:4 [C] 3.12 D:69 [G] 42.87
B:216 [ASN] D:70 [G] 3.89 D:3 [C] 42.87
B:217 [ILE] D:70 [G] 4.2 D:3 [C] 75.92
B:217 [ILE] D:71 [G] 4.03 D:2 [C] 75.92
B:220 [ASN] D:3 [C] 3.79 D:70 [G] base:SC, sugar:SC 87.63
B:220 [ASN] D:70 [G] 4.83 D:3 [C] 87.63
B:220 [ASN] D:71 [G] 3.39 D:2 [C] base:SC 87.63
B:220 [ASN] D:72 [C] 3.91 D:1 [G] 87.63
B:221 [TRP] D:72 [C] 3.47 D:1 [G] 87.93
B:244 [PHE] D:76 [A] 3.38 77.39
B:245 [THR] D:76 [A] 2.71 90.82
B:246 [THR] D:76 [A] 2.89 85.35
B:247 [ARG] D:76 [A] 3.78 73.18
B:294 [ARG] D:74 [C] 3.77 74.57
B:295 [SER] D:74 [C] 3.12 6.16
B:296 [ALA] D:74 [C] 2.76 33.91
B:297 [GLY] D:74 [C] 3.24 43.62
B:298 [ALA] D:74 [C] 3.11 69.89
B:299 [LYS] D:74 [C] 3.68 78.06
B:323 [ASN] D:74 [C] 3.47 75.84
B:324 [TYR] D:74 [C] 2.79 sugar:BB 71.34
B:324 [TYR] D:76 [A] 3.74 71.34
B:325 [VAL] D:76 [A] 3.69 86.41
B:326 [MET] D:74 [C] 3.24 66.51
B:326 [MET] D:75 [C] 4.02 66.51
B:326 [MET] D:76 [A] 2.93 base:BB, base:BB 66.51
B:328 [ASP] D:75 [C] 4.46 55.44
B:329 [PHE] D:75 [C] 3.05 base/AA stacks 67.78
B:329 [PHE] D:76 [A] 3.12 67.78
B:332 [GLY] D:76 [A] 4.41 84.05
B:333 [ALA] D:76 [A] 4.35 85.55
B:334 [VAL] D:76 [A] 3.41 78.9
B:341 [ASP] D:76 [A] 3.49 sugar:SC 89.12
B:343 [ARG] D:74 [C] 3.68 85.2
B:343 [ARG] D:75 [C] 3.19 85.2
B:343 [ARG] D:76 [A] 3.08 base:SC 85.2
B:411 [ARG] D:72 [C] 2.89 D:1 [G] 75.55
B:411 [ARG] D:73 [A] 2.98 75.55
B:601 [PHE] D:12 [G] 4.27 D:23 [C] 82.53
B:601 [PHE] D:23 [C] 3.52 D:12 [G] 82.53
B:601 [PHE] D:24 [A] 3.48 D:11 [U] 82.53
B:602 [LYS] D:12 [G] 2.66 D:23 [C] sugar:BB 70.11
B:603 [THR] D:12 [G] 3.8 D:23 [C] 82.99
B:603 [THR] D:13 [A] 2.96 D:21 [A] 82.99
B:604 [THR] D:13 [A] 3.44 D:21 [A] 87.54
B:604 [THR] D:14 [A] 2.75 D:8 [U] 87.54
B:607 [ALA] D:13 [A] 4.03 D:21 [A] 46.98
B:608 [PRO] D:13 [A] 4.78 D:21 [A] 59.48
B:618 [ALA] D:25 [C] 3.78 D:10 [G] 85.8
B:621 [SER] D:39 [U] 4.22 D:31 [A] 82.42
B:625 [ARG] D:40 [G] 2.94 D:30 [C] 87.17
B:625 [ARG] D:41 [C] 2.92 D:29 [G] 87.17
B:628 [ARG] D:39 [U] 3.26 D:31 [A] 36.5
B:628 [ARG] D:40 [G] 3.19 D:30 [C] 36.5
B:667 [GLY] D:16 [U] 4.55 49.16
B:671 [ALA] D:16 [U] 3.86 29.58
B:672 [ASP] D:15 [A] 4.07 D:48 [U] 63.15
B:675 [ARG] D:15 [A] 3.26 D:48 [U] 38.95
B:675 [ARG] D:16 [U] 3.01 38.95
B:677 [HIS] D:14 [A] 4.84 D:8 [U] 56.0
B:677 [HIS] D:15 [A] 2.94 D:48 [U] 56.0
B:679 [ASN] D:13 [A] 3.56 D:21 [A] 94.17
B:679 [ASN] D:14 [A] 3.23 D:8 [U] 94.17
B:680 [ALA] D:14 [A] 3.5 D:8 [U] 81.91
B:680 [ALA] D:15 [A] 3.59 D:48 [U] 81.91
B:683 [ALA] D:22 [A] 3.44 86.5
B:683 [ALA] D:23 [C] 3.47 D:12 [G] 86.5
B:686 [MET] D:23 [C] 2.87 D:12 [G] 90.61
B:686 [MET] D:24 [A] 3.74 D:11 [U] 90.61
B:687 [SER] D:22 [A] 4.54 48.03
B:687 [SER] D:23 [C] 3.23 D:12 [G] 48.03
B:690 [ASN] D:23 [C] 3.75 D:12 [G] 91.35
B:690 [ASN] D:24 [A] 2.81 D:11 [U] 91.35
B:690 [ASN] D:41 [C] 4.9 D:29 [G] 91.35
B:693 [TYR] D:40 [G] 4.2 D:30 [C] 17.16
B:693 [TYR] D:41 [C] 3.4 D:29 [G] 17.16
B:694 [GLU] D:41 [C] 4.42 D:29 [G] 46.15
B:755 [VAL] D:20 [U] 3.5 44.75
B:757 [PRO] D:20 [U] 3.34 46.01
B:759 [GLN] D:19 [G] 3.02 D:56 [C] base:SC 75.22
B:759 [GLN] D:20 [U] 4.63 75.22
B:759 [GLN] D:56 [C] 4.98 D:19 [G] 75.22
B:759 [GLN] D:57 [A] 4.1 75.22
B:761 [ASN] D:56 [C] 4.11 D:19 [G] 92.55
B:761 [ASN] D:57 [A] 4.28 92.55
B:762 [GLY] D:56 [C] 4.19 D:19 [G] 84.87
B:762 [GLY] D:57 [A] 3.81 84.87
B:763 [LYS] D:46F [G] 4.09 86.95
B:763 [LYS] D:46G [C] 3.89 86.95
B:764 [LEU] D:20 [U] 3.57 27.03
B:764 [LEU] D:20A [A] 4.02 27.03
B:767 [THR] D:20 [U] 3.71 30.88
B:792 [ARG] D:46E [G] 4.75 0.42
B:792 [ARG] D:46F [G] 3.46 0.42
B:802 [ARG] D:19 [G] 3.53 D:56 [C] 82.2
B:802 [ARG] D:56 [C] 3.34 D:19 [G] base/AA stacks 82.2
B:804 [VAL] D:19 [G] 3.78 D:56 [C] 77.9
B:807 [ARG] D:17 [C] 3.24 base/AA stacks 74.83
B:807 [ARG] D:19 [G] 3.14 D:56 [C] 74.83
B:808 [ILE] D:19 [G] 3.68 D:56 [C] 72.95
B:808 [ILE] D:20 [U] 3.92 72.95
B:810 [ASN] D:19 [G] 3.78 D:56 [C] 91.03
B:810 [ASN] D:56 [C] 2.75 D:19 [G] base:SC, sugar:SC 91.03
B:810 [ASN] D:57 [A] 4.24 91.03
B:812 [VAL] D:56 [C] 3.87 D:19 [G] 84.39

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group114 5AH5_B_D B: Leucine--tRNA ligase, Agrobacterium radiobacter k84 (genetically engineered) D: tRNA-leu taa isoacceptor, Agrobacterium tumefaciens (genetically engineered) B9JQP8 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related tRNA ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4ARC_A_B 5AH5_B_D 0.51 0.85 2.73 0.32 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related tRNA compare
3ZJT_A_B 5AH5_B_D 0.45 0.87 2.95 0.21 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related tRNA compare
4CQN_A_B 5AH5_B_D 0.40 0.87 3.93 0.23 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related tRNA compare
3ZGZ_A_B 5AH5_B_D 0.38 0.87 3.47 0.21 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related tRNA compare
3ZJV_A_B 5AH5_B_D 0.48 0.88 2.57 0.22 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related tRNA compare