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All interfaces > All interologs > Interface groups > group117 > 1YHQ_V_0

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_V
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
V:1 [THR] 0:92 [G] 4.85 0:82 [C] 76.52
V:1 [THR] 0:93 [C] 3.11 0:81 [G] 76.52
V:1 [THR] 0:94 [G] 3.3 76.52
V:2 [VAL] 0:93 [C] 4.9 0:81 [G] 43.62
V:2 [VAL] 0:96 [A] 4.97 43.62
V:4 [HIS] 0:94 [G] 4.36 63.78
V:4 [HIS] 0:95 [A] 4.79 63.78
V:4 [HIS] 0:96 [A] 3.35 base/AA stacks 63.78
V:5 [VAL] 0:73 [U] 3.64 0:104 [A] 4.64
V:5 [VAL] 0:74 [G] 3.84 0:103 [C] 4.64
V:6 [GLN] 0:96 [A] 3.62 32.55
V:7 [GLU] 0:96 [A] 3.64 63.37
V:9 [ARG] 0:73 [U] 3.01 0:104 [A] sugar:SC 77.62
V:9 [ARG] 0:74 [G] 3.34 0:103 [C] 77.62
V:34 [GLN] 0:57 [C] 3.09 0:89 [G] 35.42
V:34 [GLN] 0:58 [C] 4.18 0:88 [G] 35.42
V:41 [GLU] 0:57 [C] 4.63 0:89 [G] 65.25
V:42 [ASN] 0:91 [G] 3.78 0:83 [C] 74.5
V:42 [ASN] 0:92 [G] 4.95 0:82 [C] 74.5
V:43 [PRO] 0:57 [C] 3.69 0:89 [G] 67.08
V:43 [PRO] 0:90 [A] 3.98 67.08
V:43 [PRO] 0:91 [G] 3.88 0:83 [C] 67.08
V:44 [GLY] 0:91 [G] 3.49 0:83 [C] sugar:BB 56.05
V:44 [GLY] 0:92 [G] 3.69 0:82 [C] 56.05
V:46 [ILE] 0:57 [C] 3.59 0:89 [G] 75.09
V:47 [LYS] 0:57 [C] 3.65 0:89 [G] 69.42
V:47 [LYS] 0:83 [C] 3.55 0:91 [G] sugar:SC 69.42
V:48 [GLU] 0:92 [G] 4.03 0:82 [C] 1.38
V:48 [GLU] 0:93 [C] 4.01 0:81 [G] 1.38
V:50 [ARG] 0:55 [U] 3.32 0:64 [G] sugar:SC 90.65
V:50 [ARG] 0:56 [G] 3.1 90.65
V:50 [ARG] 0:57 [C] 4.49 0:89 [G] 90.65
V:50 [ARG] 0:68 [U] 4.48 90.65
V:50 [ARG] 0:69 [A] 3.13 90.65
V:50 [ARG] 0:70 [A] 3.41 0:63 [U] 90.65
V:51 [LYS] 0:69 [A] 4.13 83.05
V:51 [LYS] 0:71 [G] 3.25 0:106 [A] 83.05
V:51 [LYS] 0:72 [C] 3.29 0:105 [G] 83.05
V:53 [ILE] 0:68 [U] 4.27 92.7
V:54 [ALA] 0:68 [U] 3.4 99.0
V:54 [ALA] 0:69 [A] 4.13 99.0
V:54 [ALA] 0:72 [C] 3.56 0:105 [G] 99.0
V:55 [ARG] 0:72 [C] 3.33 0:105 [G] 94.51
V:55 [ARG] 0:73 [U] 3.11 0:104 [A] 94.51
V:57 [LYS] 0:68 [U] 3.33 54.07
V:58 [THR] 0:68 [U] 3.39 98.86
V:58 [THR] 0:72 [C] 2.6 0:105 [G] sugar:SC 98.86
V:58 [THR] 0:73 [U] 3.45 0:104 [A] 98.86
V:58 [THR] 0:105 [G] 4.17 0:72 [C] 98.86
V:58 [THR] 0:106 [A] 4.93 0:71 [G] 98.86
V:59 [ILE] 0:73 [U] 4.54 0:104 [A] 68.67
V:62 [GLU] 0:73 [U] 2.81 0:104 [A] sugar:SC 73.47

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group117 1YHQ_V_0 V: 50s ribosomal protein l29p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P10971 Ribosomal protein L29 (L29p) Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_V_0 6AZ3_a_7 0.59 0.61 1.93 0.38 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 4Y4O_12_1A 0.63 0.93 2.13 0.25 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7K00_x_a 0.71 0.91 2.22 0.39 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7RYG_X_A 0.46 0.92 3.85 0.41 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 6S0Z_W_A 0.71 0.93 2.68 0.58 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7O7Y_Bh_B8 0.59 0.63 2.24 0.29 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 1YHQ_V_0 0.99 1.0 0.27 0.9 Ribosomal protein L29 (L29p) Archaeal large subunit ribosomal RNA compare