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All interfaces > All interologs > Interface groups > group119 > 7OF0_W_A

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

7OF0_W
7OF0_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
W:49 [ARG] A:2827 [A] 4.06 A:2841 [U] 79.89
W:49 [ARG] A:2834 [C] 4.77 79.89
W:49 [ARG] A:2835 [C] 3.09 79.89
W:49 [ARG] A:2836 [C] 4.26 79.89
W:49 [ARG] A:2863 [U] 4.92 A:2869 [A] 79.89
W:49 [ARG] A:2864 [U] 3.56 79.89
W:50 [ARG] A:2834 [C] 3.57 71.37
W:50 [ARG] A:2835 [C] 3.24 71.37
W:50 [ARG] A:2836 [C] 2.76 71.37
W:50 [ARG] A:2863 [U] 3.44 A:2869 [A] 71.37
W:50 [ARG] A:2864 [U] 2.98 base/AA stacks 71.37
W:50 [ARG] A:2865 [C] 3.51 71.37
W:51 [GLN] A:2833 [A] 4.61 78.12
W:51 [GLN] A:2834 [C] 2.98 78.12
W:51 [GLN] A:2835 [C] 4.59 78.12
W:52 [GLY] A:2833 [A] 4.49 96.87
W:52 [GLY] A:2834 [C] 4.78 96.87
W:53 [ILE] A:2064 [A] 3.25 A:2075 [U] 42.75
W:53 [ILE] A:2833 [A] 4.28 42.75
W:54 [LYS] A:2862 [C] 3.42 A:2870 [G] 90.27
W:54 [LYS] A:2863 [U] 3.09 A:2869 [A] 90.27
W:56 [MET] A:2063 [G] 3.0 A:2076 [C] 0.95
W:56 [MET] A:2064 [A] 4.06 A:2075 [U] 0.95
W:56 [MET] A:2076 [C] 3.46 A:2063 [G] 0.95
W:56 [MET] A:2077 [C] 3.76 A:2062 [A] 0.95
W:56 [MET] A:2833 [A] 4.54 0.95
W:57 [GLU] A:2062 [A] 2.93 A:2077 [C] base:SC, sugar:SC 51.0
W:57 [GLU] A:2063 [G] 2.7 A:2076 [C] 51.0
W:57 [GLU] A:2077 [C] 4.51 A:2062 [A] 51.0
W:59 [HIS] A:2077 [C] 2.41 A:2062 [A] sugar:SC 49.14
W:59 [HIS] A:2078 [C] 3.83 A:2060 [A] 49.14
W:62 [HIS] A:2860 [G] 4.03 A:2872 [C] 43.49
W:62 [HIS] A:2861 [A] 4.9 A:2871 [U] 43.49
W:63 [ALA] A:2859 [A] 3.2 A:2873 [A] 47.12
W:63 [ALA] A:2860 [G] 2.82 A:2872 [C] sugar:BB 47.12
W:64 [GLY] A:2859 [A] 3.25 A:2873 [A] 92.37
W:64 [GLY] A:2860 [G] 2.89 A:2872 [C] base:BB 92.37
W:64 [GLY] A:2861 [A] 4.07 A:2871 [U] 92.37
W:65 [ASN] A:2860 [G] 2.39 A:2872 [C] sugar:SC 59.25
W:65 [ASN] A:2861 [A] 3.16 A:2871 [U] 59.25
W:66 [ILE] A:2860 [G] 4.49 A:2872 [C] 90.57
W:66 [ILE] A:2861 [A] 2.8 A:2871 [U] sugar:BB 90.57
W:66 [ILE] A:2862 [C] 3.56 A:2870 [G] 90.57
W:66 [ILE] A:2872 [C] 3.96 A:2860 [G] 90.57
W:69 [THR] A:2862 [C] 3.9 A:2870 [G] 77.58
W:71 [ARG] A:2826 [G] 3.14 A:2842 [C] 75.74
W:71 [ARG] A:2827 [A] 3.38 A:2841 [U] 75.74
W:72 [HIS] A:2065 [A] 3.42 71.5
W:74 [ARG] A:2064 [A] 3.26 A:2075 [U] 58.3
W:74 [ARG] A:2065 [A] 2.9 base/AA stacks 58.3
W:74 [ARG] A:2832 [A] 4.67 58.3
W:74 [ARG] A:2833 [A] 2.77 58.3
W:75 [TRP] A:2064 [A] 3.13 A:2075 [U] sugar:SC 27.09
W:75 [TRP] A:2065 [A] 4.03 27.09
W:83 [VAL] A:2873 [A] 4.72 A:2859 [A] 46.59
W:84 [GLY] A:2872 [C] 3.33 A:2860 [G] 84.76
W:84 [GLY] A:2873 [A] 3.59 A:2859 [A] 84.76
W:85 [LYS] A:2872 [C] 3.42 A:2860 [G] 63.84
W:85 [LYS] A:2873 [A] 3.12 A:2859 [A] 63.84
W:85 [LYS] A:2889 [C] 4.64 A:2849 [G] 63.84
W:86 [ASN] A:2871 [U] 3.38 A:2861 [A] 82.08
W:86 [ASN] A:2872 [C] 3.43 A:2860 [G] 82.08
W:88 [CYS] A:2872 [C] 4.34 A:2860 [G] 90.27
W:90 [TYR] A:2872 [C] 4.15 A:2860 [G] 52.94
W:90 [TYR] A:2873 [A] 3.47 A:2859 [A] 52.94
W:90 [TYR] A:2874 [A] 3.76 A:2858 [A] 52.94
W:92 [LEU] A:2874 [A] 3.69 A:2858 [A] 58.38
W:99 [TYR] A:2063 [G] 3.23 A:2076 [C] 64.2
W:99 [TYR] A:2064 [A] 3.8 A:2075 [U] 64.2
W:100 [THR] A:2064 [A] 4.75 A:2075 [U] 62.7
W:101 [LYS] A:2063 [G] 4.66 A:2076 [C] 42.34
W:101 [LYS] A:2064 [A] 2.44 A:2075 [U] 42.34
W:101 [LYS] A:2065 [A] 4.32 42.34
W:101 [LYS] A:2066 [C] 4.7 42.34
W:128 [LYS] A:2066 [C] 4.98 75.92
W:129 [THR] A:2064 [A] 3.72 A:2075 [U] 54.26
W:129 [THR] A:2065 [A] 3.15 54.26
W:129 [THR] A:2066 [C] 4.79 54.26

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group119 7OF0_W_A W: 39s ribosomal protein l27, mitochondrial, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) Q9P0M9 Ribosomal L27 protein Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4W2F_B0_AX,BA 7OF0_W_A 0.83 0.94 1.73 0.26 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
6S0Z_U_A 7OF0_W_A 0.76 0.94 1.77 0.23 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4Y4O_10_1A 7OF0_W_A 0.81 0.95 1.78 0.26 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
6XHV_10_1A,1x 7OF0_W_A 0.82 0.94 1.31 0.26 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
7OF0_W_A 7RYG_V_A 0.50 0.91 3.52 0.19 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare