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All interfaces > All interologs > Interface groups > group122 > 1VQ8_N_0 vs 6S0Z_M_A

Interface analysis


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Common contacts -

1VQ8_N
1VQ8_0
6S0Z_M
6S0Z_A
Conserved?
N:20 [TYR] 0:2368 [A] M:17 [ARG] A:2361 [U] ✔
N:102 [LEU] 0:2413 [A] M:94 [PHE] A:2403 [A] ✔
N:102 [LEU] 0:2414 [A] M:94 [PHE] A:2404 [A] ✔
N:101 [VAL] 0:2415 [A] M:93 [VAL] A:2405 [A] ✔
N:108 [SER] 0:2328 [U] M:100 [LEU] A:2321 [C] ✔
N:104 [ILE] 0:2413 [A] M:96 [ARG] A:2403 [A] ✔
N:25 [ARG] 0:2415 [A] M:21 [ASN] A:2405 [A] ✔
N:109 [PRO] 0:2413 [A] M:101 [TYR] A:2403 [A] ✔
N:26 [LEU] 0:2415 [A] M:22 [LEU] A:2405 [A] ✔
N:16 [ALA] 0:2368 [A] M:13 [LYS] A:2361 [U] ✔
N:101 [VAL] 0:2414 [A] M:93 [VAL] A:2404 [A] ❌ 6S0Z_M_A
N:13 [ARG] 0:2368 [A] M:10 [VAL] A:2361 [U] ❌ 6S0Z_M_A
N:106 [LEU] 0:2368 [A] M:98 [GLY] A:2361 [U] ❌ 6S0Z_M_A
N:25 [ARG] 0:2414 [A] M:21 [ASN] A:2404 [A] ❌ 6S0Z_M_A
N:25 [ARG] 0:2416 [G] M:21 [ASN] A:2406 [G] ❌ 6S0Z_M_A
N:17 [ARG] 0:2368 [A] M:14 [ARG] A:2361 [U] ❌ 6S0Z_M_A
N:109 [PRO] 0:2327 [A] M:101 [TYR] A:2320 [C] ❌ 6S0Z_M_A
N:109 [PRO] 0:2328 [U] M:101 [TYR] A:2321 [C] ❌ 6S0Z_M_A
N:26 [LEU] 0:2414 [A] M:22 [LEU] A:2404 [A] ❌ 6S0Z_M_A
N:108 [SER] 0:2327 [A] M:100 [LEU] A:2320 [C] ❌ 1VQ8_N_0
N:17 [ARG] 0:2328 [U] M:14 [ARG] A:2321 [C] ❌ 1VQ8_N_0
N:20 [TYR] 0:2369 [A] M:17 [ARG] A:2362 [A] ❌ 1VQ8_N_0
N:20 [TYR] 0:2367 [A] M:17 [ARG] A:2360 [A] ❌ 1VQ8_N_0
N:104 [ILE] 0:2328 [U] M:96 [ARG] A:2321 [C] ❌ 1VQ8_N_0
N:104 [ILE] 0:2327 [A] M:96 [ARG] A:2320 [C] ❌ 1VQ8_N_0
N:106 [LEU] 0:2328 [U] M:98 [GLY] A:2321 [C] ❌ 1VQ8_N_0
N:13 [ARG] 0:2353 [A] M:10 [VAL] A:2346 [U] ❌ 6S0Z_A:2346 no longer at interface
N:13 [ARG] 0:2329 [C] M:10 [VAL] A:2322 [C] ❌ 1VQ8_0:2329 no longer at interface
N:17 [ARG] 0:2329 [C] M:14 [ARG] A:2322 [C] ❌ 1VQ8_0:2329 no longer at interface
N:20 [TYR] 0:2329 [C] M:17 [ARG] A:2322 [C] ❌ 1VQ8_0:2329 no longer at interface
N:20 [TYR] 0:2330 [U] M:17 [ARG] A:2323 [U] ❌ 1VQ8_0:2330 no longer at interface
N:18 [THR] 0:2368 [A] M:15 [HIS] A:2361 [U] ❌ 6S0Z_M:15 no longer at interface
N:22 [GLN] 0:2413 [A] M:18 [VAL] A:2403 [A] ❌ 6S0Z_M:18 no longer at interface
N:22 [GLN] 0:2414 [A] M:18 [VAL] A:2404 [A] ❌ 6S0Z_M:18 no longer at interface
N:22 [GLN] 0:2415 [A] M:18 [VAL] A:2405 [A] ❌ 6S0Z_M:18 no longer at interface
N:19 [ASP] 0:2368 [A] M:16 [ALA] A:2361 [U] ❌ 6S0Z_M:16 no longer at interface
N:19 [ASP] 0:2369 [A] M:16 [ALA] A:2362 [A] ❌ 6S0Z_M:16 no longer at interface
N:27 [LEU] 0:2415 [A] M:23 [SER] A:2405 [A] ❌ 6S0Z_M:23 no longer at interface
N:116 [PHE] 0:2413 [A] M:106 [LYS] A:2403 [A] ❌ 6S0Z_M:106 no longer at interface
N:12 [ARG] 0:2368 [A] M:9 [LYS] A:2361 [U] ❌ 6S0Z_M:9 no longer at interface
N:120 [GLU] 0:2413 [A] M:110 [GLU] A:2403 [A] ❌ 1VQ8_N:120 no longer at interface
N:123 [ILE] 0:2413 [A] M:113 [ARG] A:2403 [A] ❌ 1VQ8_N:123 no longer at interface
N:123 [ILE] 0:2414 [A] M:113 [ARG] A:2404 [A] ❌ 1VQ8_N:123 no longer at interface
N:129 [ILE] 0:2413 [A] M:119 [PHE] A:2403 [A] ❌ 1VQ8_N:129 no longer at interface
N:129 [ILE] 0:2414 [A] M:119 [PHE] A:2404 [A] ❌ 1VQ8_N:129 no longer at interface
N:24 [LEU] 0:2368 [A] M:20 [THR] A:2361 [U] ❌ 1VQ8_N:24 no longer at interface
N:32 [PRO] 0:2416 [G] M:28 [LYS] A:2406 [G] ❌ 1VQ8_N:32 no longer at interface
N:32 [PRO] 0:2415 [A] M:28 [LYS] A:2405 [A] ❌ 1VQ8_N:32 no longer at interface
N:100 [ALA] 0:2415 [A] M:92 [ILE] A:2405 [A] ❌ 1VQ8_N:100 no longer at interface
N:107 [ASN] 0:2328 [U] M:99 [TYR] A:2321 [C] ❌ 1VQ8_N:107 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 0.91 3.95 0.14 0.76 0.93 0.57 0.69 0.30 0.32 0.00 0.60


Other pairs involving 1VQ8_N_0 or 6S0Z_M_A

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1S_1A 6S0Z_M_A 0.62 0.97 2.94 0.38 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
6AZ3_O_2 6S0Z_M_A 0.37 0.75 3.35 0.05 Ribonuclease H-like compare
6S0Z_M_A 7RYG_N_A 0.66 0.98 2.44 0.37 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
6S0Z_M_A 7K00_n_a 0.68 0.97 2.72 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
6S0Z_M_A 7O7Y_BD_B5 0.26 0.89 4.78 0.05 Ribonuclease H-like compare
1YHQ_N_0 6S0Z_M_A 0.30 0.91 3.99 0.14 Ribonuclease H-like compare
1VQ8_N_0 6S0Z_M_A 0.30 0.91 3.95 0.14 Ribonuclease H-like compare
1VQ8_N_0 1YHQ_N_0 1.00 1.0 0.17 1.0 Ribonuclease H-like Archaeal large subunit ribosomal RNA compare
1VQ8_N_0 7RYG_N_A 0.17 0.92 5.13 0.05 Ribonuclease H-like compare
1VQ8_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare
1VQ8_N_0 6AZ3_O_2 0.80 0.79 1.53 0.42 Ribonuclease H-like compare
1VQ8_N_0 7O7Y_BD_B5 0.71 0.94 3.15 0.42 Ribonuclease H-like compare
1VQ8_N_0 4Y4O_1S_1A 0.37 0.91 4.22 0.09 Ribonuclease H-like compare