RNAprotDB

All interfaces > All interologs > Interface groups > group122 > 6S0Z_M_A vs 7K00_n_a

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6S0Z_M
6S0Z_A
7K00_n
7K00_a
Conserved?
M:20 [THR] A:2361 [U] n:16 [ARG] a:2334 [U] ✔
M:96 [ARG] A:2320 [C] n:94 [ARG] a:2293 [G] ✔
M:96 [ARG] A:2321 [C] n:94 [ARG] a:2294 [G] ✔
M:96 [ARG] A:2403 [A] n:94 [ARG] a:2376 [A] ✔
M:10 [VAL] A:2322 [C] n:6 [ALA] a:2295 [C] ✔
M:14 [ARG] A:2321 [C] n:10 [ARG] a:2294 [G] ✔
M:14 [ARG] A:2322 [C] n:10 [ARG] a:2295 [C] ✔
M:113 [ARG] A:2403 [A] n:111 [ARG] a:2376 [A] ✔
M:113 [ARG] A:2404 [A] n:111 [ARG] a:2377 [A] ✔
M:93 [VAL] A:2405 [A] n:91 [SER] a:2378 [A] ✔
M:119 [PHE] A:2403 [A] n:117 [PHE] a:2376 [A] ✔
M:119 [PHE] A:2404 [A] n:117 [PHE] a:2377 [A] ✔
M:98 [GLY] A:2321 [C] n:96 [GLY] a:2294 [G] ✔
M:94 [PHE] A:2403 [A] n:92 [PHE] a:2376 [A] ✔
M:94 [PHE] A:2404 [A] n:92 [PHE] a:2377 [A] ✔
M:21 [ASN] A:2405 [A] n:17 [LYS] a:2378 [A] ✔
M:101 [TYR] A:2403 [A] n:99 [TYR] a:2376 [A] ✔
M:17 [ARG] A:2361 [U] n:13 [ARG] a:2334 [U] ✔
M:17 [ARG] A:2362 [A] n:13 [ARG] a:2335 [A] ✔
M:28 [LYS] A:2405 [A] n:23 [ALA] a:2378 [A] ✔
M:13 [LYS] A:2361 [U] n:9 [ARG] a:2334 [U] ✔
M:99 [TYR] A:2321 [C] n:97 [PHE] a:2294 [G] ✔
M:100 [LEU] A:2320 [C] n:98 [GLN] a:2293 [G] ✔
M:100 [LEU] A:2321 [C] n:98 [GLN] a:2294 [G] ✔
M:22 [LEU] A:2405 [A] n:18 [LEU] a:2378 [A] ✔
M:17 [ARG] A:2322 [C] n:13 [ARG] a:2295 [C] ❌ 7K00_n_a
M:17 [ARG] A:2323 [U] n:13 [ARG] a:2296 [U] ❌ 7K00_n_a
M:28 [LYS] A:2406 [G] n:23 [ALA] a:2379 [G] ❌ 7K00_n_a
M:21 [ASN] A:2406 [G] n:17 [LYS] a:2379 [G] ❌ 6S0Z_M_A
M:13 [LYS] A:2322 [C] n:9 [ARG] a:2295 [C] ❌ 6S0Z_M_A
M:13 [LYS] A:2323 [U] n:9 [ARG] a:2296 [U] ❌ 6S0Z_M_A
M:13 [LYS] A:2362 [A] n:9 [ARG] a:2335 [A] ❌ 6S0Z_M_A
M:17 [ARG] A:2360 [A] n:13 [ARG] a:2333 [A] ❌ 7K00_a:2333 no longer at interface
M:17 [ARG] A:2363 [A] n:13 [ARG] a:2336 [A] ❌ 6S0Z_A:2363 no longer at interface
M:21 [ASN] A:2407 [A] n:17 [LYS] a:2380 [C] ❌ 6S0Z_A:2407 no longer at interface
M:24 [GLY] A:2407 [A] n:21 [LEU] a:2380 [C] ❌ 6S0Z_M:24, 6S0Z_A:2407 no longer at interface
M:92 [ILE] A:2405 [A] n:90 [VAL] a:2378 [A] ❌ 7K00_n:90 no longer at interface
M:110 [GLU] A:2403 [A] n:108 [ASP] a:2376 [A] ❌ 7K00_n:108 no longer at interface
M:16 [ALA] A:2361 [U] n:12 [THR] a:2334 [U] ❌ 6S0Z_M:16 no longer at interface
M:18 [VAL] A:2405 [A] n:14 [ALA] a:2378 [A] ❌ 6S0Z_M:18 no longer at interface
M:24 [GLY] A:2406 [G] n:21 [LEU] a:2379 [G] ❌ 6S0Z_M:24 no longer at interface
M:24 [GLY] A:2405 [A] n:21 [LEU] a:2378 [A] ❌ 6S0Z_M:24 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like Bacterial large subunit ribosomal RNA 0.97 2.72 0.43 0.87 0.97 0.81 0.83 0.68 0.60 0.27 0.59


Other pairs involving 6S0Z_M_A or 7K00_n_a

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1S_1A 7K00_n_a 0.77 0.96 1.65 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
4Y4O_1S_1A 6S0Z_M_A 0.62 0.97 2.94 0.38 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
6AZ3_O_2 7K00_n_a 0.46 0.75 2.27 0.05 Ribonuclease H-like compare
6AZ3_O_2 6S0Z_M_A 0.37 0.75 3.35 0.05 Ribonuclease H-like compare
6S0Z_M_A 7RYG_N_A 0.66 0.98 2.44 0.37 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
6S0Z_M_A 7K00_n_a 0.68 0.97 2.72 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
6S0Z_M_A 7O7Y_BD_B5 0.26 0.89 4.78 0.05 Ribonuclease H-like compare
1YHQ_N_0 6S0Z_M_A 0.30 0.91 3.99 0.14 Ribonuclease H-like compare
1YHQ_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare
1VQ8_N_0 6S0Z_M_A 0.30 0.91 3.95 0.14 Ribonuclease H-like compare
1VQ8_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare