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All interfaces > All interologs > Interface groups > group123 > 1VQ8_N_9 vs 1YHQ_N_9

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Common contacts -

1VQ8_N
1VQ8_9
1YHQ_N
1YHQ_9
Conserved?
N:4 [PRO] 9:3011 [A] N:4 [PRO] 9:11 [A] ✔
N:4 [PRO] 9:3068 [G] N:4 [PRO] 9:68 [G] ✔
N:4 [PRO] 9:3069 [U] N:4 [PRO] 9:69 [U] ✔
N:20 [TYR] 9:3007 [G] N:20 [TYR] 9:7 [G] ✔
N:20 [TYR] 9:3008 [G] N:20 [TYR] 9:8 [G] ✔
N:20 [TYR] 9:3010 [C] N:20 [TYR] 9:10 [C] ✔
N:2 [THR] 9:3068 [G] N:2 [THR] 9:68 [G] ✔
N:77 [ASN] 9:3049 [G] N:77 [ASN] 9:49 [G] ✔
N:77 [ASN] 9:3050 [G] N:77 [ASN] 9:50 [G] ✔
N:150 [TYR] 9:3032 [G] N:150 [TYR] 9:32 [G] ✔
N:150 [TYR] 9:3034 [A] N:150 [TYR] 9:34 [A] ✔
N:150 [TYR] 9:3049 [G] N:150 [TYR] 9:49 [G] ✔
N:48 [VAL] 9:3006 [C] N:48 [VAL] 9:6 [C] ✔
N:158 [LEU] 9:3049 [G] N:158 [LEU] 9:49 [G] ✔
N:158 [LEU] 9:3050 [G] N:158 [LEU] 9:50 [G] ✔
N:158 [LEU] 9:3051 [A] N:158 [LEU] 9:51 [A] ✔
N:79 [PRO] 9:3049 [G] N:79 [PRO] 9:49 [G] ✔
N:115 [VAL] 9:3048 [C] N:115 [VAL] 9:48 [C] ✔
N:147 [ILE] 9:3034 [A] N:147 [ILE] 9:34 [A] ✔
N:147 [ILE] 9:3049 [G] N:147 [ILE] 9:49 [G] ✔
N:147 [ILE] 9:3050 [G] N:147 [ILE] 9:50 [G] ✔
N:141 [ARG] 9:3035 [C] N:141 [ARG] 9:35 [C] ✔
N:141 [ARG] 9:3036 [C] N:141 [ARG] 9:36 [C] ✔
N:141 [ARG] 9:3048 [C] N:141 [ARG] 9:48 [C] ✔
N:141 [ARG] 9:3049 [G] N:141 [ARG] 9:49 [G] ✔
N:60 [SER] 9:3119 [C] N:60 [SER] 9:119 [C] ✔
N:60 [SER] 9:3120 [A] N:60 [SER] 9:120 [A] ✔
N:160 [SER] 9:3050 [G] N:160 [SER] 9:50 [G] ✔
N:160 [SER] 9:3051 [A] N:160 [SER] 9:51 [A] ✔
N:160 [SER] 9:3052 [A] N:160 [SER] 9:52 [A] ✔
N:54 [GLY] 9:3007 [G] N:54 [GLY] 9:7 [G] ✔
N:54 [GLY] 9:3008 [G] N:54 [GLY] 9:8 [G] ✔
N:54 [GLY] 9:3117 [G] N:54 [GLY] 9:117 [G] ✔
N:42 [HIS] 9:3026 [C] N:42 [HIS] 9:26 [C] ✔
N:42 [HIS] 9:3027 [C] N:42 [HIS] 9:27 [C] ✔
N:10 [MET] 9:3010 [C] N:10 [MET] 9:10 [C] ✔
N:18 [THR] 9:3007 [G] N:18 [THR] 9:7 [G] ✔
N:8 [VAL] 9:3010 [C] N:8 [VAL] 9:10 [C] ✔
N:8 [VAL] 9:3011 [A] N:8 [VAL] 9:11 [A] ✔
N:8 [VAL] 9:3013 [A] N:8 [VAL] 9:13 [A] ✔
N:8 [VAL] 9:3014 [G] N:8 [VAL] 9:14 [G] ✔
N:14 [ARG] 9:3010 [C] N:14 [ARG] 9:10 [C] ✔
N:14 [ARG] 9:3011 [A] N:14 [ARG] 9:11 [A] ✔
N:14 [ARG] 9:3013 [A] N:14 [ARG] 9:13 [A] ✔
N:14 [ARG] 9:3014 [G] N:14 [ARG] 9:14 [G] ✔
N:53 [ASN] 9:3007 [G] N:53 [ASN] 9:7 [G] ✔
N:53 [ASN] 9:3008 [G] N:53 [ASN] 9:8 [G] ✔
N:53 [ASN] 9:3116 [C] N:53 [ASN] 9:116 [C] ✔
N:53 [ASN] 9:3117 [G] N:53 [ASN] 9:117 [G] ✔
N:23 [ARG] 9:3007 [G] N:23 [ARG] 9:7 [G] ✔
N:23 [ARG] 9:3008 [G] N:23 [ARG] 9:8 [G] ✔
N:159 [TYR] 9:3049 [G] N:159 [TYR] 9:49 [G] ✔
N:159 [TYR] 9:3050 [G] N:159 [TYR] 9:50 [G] ✔
N:159 [TYR] 9:3051 [A] N:159 [TYR] 9:51 [A] ✔
N:153 [GLN] 9:3034 [A] N:153 [GLN] 9:34 [A] ✔
N:108 [SER] 9:3046 [C] N:108 [SER] 9:46 [C] ✔
N:108 [SER] 9:3047 [A] N:108 [SER] 9:47 [A] ✔
N:55 [ASP] 9:3006 [C] N:55 [ASP] 9:6 [C] ✔
N:55 [ASP] 9:3007 [G] N:55 [ASP] 9:7 [G] ✔
N:55 [ASP] 9:3117 [G] N:55 [ASP] 9:117 [G] ✔
N:55 [ASP] 9:3118 [C] N:55 [ASP] 9:118 [C] ✔
N:39 [SER] 9:3027 [C] N:39 [SER] 9:27 [C] ✔
N:39 [SER] 9:3028 [U] N:39 [SER] 9:28 [U] ✔
N:33 [ARG] 9:3006 [C] N:33 [ARG] 9:6 [C] ✔
N:33 [ARG] 9:3007 [G] N:33 [ARG] 9:7 [G] ✔
N:6 [TYR] 9:3011 [A] N:6 [TYR] 9:11 [A] ✔
N:6 [TYR] 9:3014 [G] N:6 [TYR] 9:14 [G] ✔
N:5 [ARG] 9:3011 [A] N:5 [ARG] 9:11 [A] ✔
N:78 [MET] 9:3048 [C] N:78 [MET] 9:48 [C] ✔
N:78 [MET] 9:3049 [G] N:78 [MET] 9:49 [G] ✔
N:11 [ARG] 9:3007 [G] N:11 [ARG] 9:7 [G] ✔
N:11 [ARG] 9:3008 [G] N:11 [ARG] 9:8 [G] ✔
N:11 [ARG] 9:3009 [C] N:11 [ARG] 9:9 [C] ✔
N:11 [ARG] 9:3010 [C] N:11 [ARG] 9:10 [C] ✔
N:11 [ARG] 9:3013 [A] N:11 [ARG] 9:13 [A] ✔
N:11 [ARG] 9:3114 [G] N:11 [ARG] 9:114 [G] ✔
N:11 [ARG] 9:3115 [C] N:11 [ARG] 9:115 [C] ✔
N:11 [ARG] 9:3116 [C] N:11 [ARG] 9:116 [C] ✔
N:1 [ALA] 9:3011 [A] N:1 [ALA] 9:11 [A] ✔
N:1 [ALA] 9:3014 [G] N:1 [ALA] 9:14 [G] ✔
N:1 [ALA] 9:3015 [C] N:1 [ALA] 9:15 [C] ✔
N:1 [ALA] 9:3067 [C] N:1 [ALA] 9:67 [C] ✔
N:1 [ALA] 9:3068 [G] N:1 [ALA] 9:68 [G] ✔
N:37 [ARG] 9:3005 [G] N:37 [ARG] 9:5 [G] ✔
N:37 [ARG] 9:3006 [C] N:37 [ARG] 9:6 [C] ✔
N:37 [ARG] 9:3007 [G] N:37 [ARG] 9:7 [G] ✔
N:40 [ASN] 9:3028 [U] N:40 [ASN] 9:28 [U] ✔
N:40 [ASN] 9:3029 [C] N:40 [ASN] 9:29 [C] ✔
N:40 [ASN] 9:3030 [C] N:40 [ASN] 9:30 [C] ✔
N:40 [ASN] 9:3050 [G] N:40 [ASN] 9:50 [G] ✔
N:40 [ASN] 9:3051 [A] N:40 [ASN] 9:51 [A] ✔
N:110 [THR] 9:3036 [C] N:110 [THR] 9:36 [C] ✔
N:110 [THR] 9:3037 [C] N:110 [THR] 9:37 [C] ✔
N:110 [THR] 9:3046 [C] N:110 [THR] 9:46 [C] ✔
N:110 [THR] 9:3047 [A] N:110 [THR] 9:47 [A] ✔
N:107 [ASN] 9:3047 [A] N:107 [ASN] 9:47 [A] ✔
N:114 [LYS] 9:3047 [A] N:114 [LYS] 9:47 [A] ✔
N:114 [LYS] 9:3048 [C] N:114 [LYS] 9:48 [C] ✔
N:114 [LYS] 9:3049 [G] N:114 [LYS] 9:49 [G] ✔
N:111 [PRO] 9:3036 [C] N:111 [PRO] 9:36 [C] ✔
N:111 [PRO] 9:3037 [C] N:111 [PRO] 9:37 [C] ✔
N:38 [LYS] 9:3028 [U] N:38 [LYS] 9:28 [U] ✔
N:38 [LYS] 9:3047 [A] N:38 [LYS] 9:47 [A] ✔
N:38 [LYS] 9:3048 [C] N:38 [LYS] 9:48 [C] ✔
N:17 [ARG] 9:3004 [G] N:17 [ARG] 9:4 [G] ✔
N:17 [ARG] 9:3005 [G] N:17 [ARG] 9:5 [G] ✔
N:17 [ARG] 9:3006 [C] N:17 [ARG] 9:6 [C] ✔
N:17 [ARG] 9:3007 [G] N:17 [ARG] 9:7 [G] ✔
N:9 [PRO] 9:3010 [C] N:9 [PRO] 9:10 [C] ✔
N:62 [HIS] 9:3027 [C] N:62 [HIS] 9:27 [C] ✔
N:146 [HIS] 9:3034 [A] N:146 [HIS] 9:34 [A] ✔
N:146 [HIS] 9:3035 [C] N:146 [HIS] 9:35 [C] ✔
N:146 [HIS] 9:3048 [C] N:146 [HIS] 9:48 [C] ✔
N:146 [HIS] 9:3049 [G] N:146 [HIS] 9:49 [G] ✔
N:76 [GLY] 9:3049 [G] N:76 [GLY] 9:49 [G] ✔
N:76 [GLY] 9:3050 [G] N:76 [GLY] 9:50 [G] ✔
N:74 [PRO] 9:3050 [G] N:74 [PRO] 9:50 [G] ✔
N:74 [PRO] 9:3051 [A] N:74 [PRO] 9:51 [A] ✔
N:56 [ASP] 9:3117 [G] N:56 [ASP] 9:117 [G] ✔
N:56 [ASP] 9:3118 [C] N:56 [ASP] 9:118 [C] ✔
N:35 [VAL] 9:3005 [G] N:35 [VAL] 9:5 [G] ✔
N:35 [VAL] 9:3006 [C] N:35 [VAL] 9:6 [C] ✔
N:52 [PRO] 9:3008 [G] N:52 [PRO] 9:8 [G] ✔
N:113 [SER] 9:3036 [C] N:113 [SER] 9:36 [C] ✔
N:113 [SER] 9:3047 [A] N:113 [SER] 9:47 [A] ✔
N:113 [SER] 9:3048 [C] N:113 [SER] 9:48 [C] ✔
N:46 [GLN] 9:3004 [G] N:46 [GLN] 9:4 [G] ✔
N:46 [GLN] 9:3005 [G] N:46 [GLN] 9:5 [G] ✔
N:46 [GLN] 9:3006 [C] N:46 [GLN] 9:6 [C] ✔
N:46 [GLN] 9:3119 [C] N:46 [GLN] 9:119 [C] ✔
N:12 [ARG] 9:3006 [C] N:12 [ARG] 9:6 [C] ✔
N:12 [ARG] 9:3007 [G] N:12 [ARG] 9:7 [G] ✔
N:57 [THR] 9:3005 [G] N:57 [THR] 9:5 [G] ✔
N:57 [THR] 9:3118 [C] N:57 [THR] 9:118 [C] ✔
N:57 [THR] 9:3119 [C] N:57 [THR] 9:119 [C] ✔
N:103 [ASP] 9:3006 [C] N:103 [ASP] 9:6 [C] ✔
N:103 [ASP] 9:3007 [G] N:103 [ASP] 9:7 [G] ✔
N:41 [LYS] 9:3025 [G] N:41 [LYS] 9:25 [G] ✔
N:41 [LYS] 9:3026 [C] N:41 [LYS] 9:26 [C] ✔
N:41 [LYS] 9:3027 [C] N:41 [LYS] 9:27 [C] ✔
N:41 [LYS] 9:3028 [U] N:41 [LYS] 9:28 [U] ✔
N:41 [LYS] 9:3051 [A] N:41 [LYS] 9:51 [A] ✔
N:44 [ARG] 9:3004 [G] N:44 [ARG] 9:4 [G] ✔
N:44 [ARG] 9:3005 [G] N:44 [ARG] 9:5 [G] ✔
N:44 [ARG] 9:3120 [A] N:44 [ARG] 9:120 [A] ✔
N:3 [GLY] 9:3011 [A] N:3 [GLY] 9:11 [A] ✔
N:3 [GLY] 9:3068 [G] N:3 [GLY] 9:68 [G] ✔
N:3 [GLY] 9:3069 [U] N:3 [GLY] 9:69 [U] ✔
N:161 [GLY] 9:3051 [A] N:161 [GLY] 9:51 [A] ✔
N:112 [GLY] 9:3036 [C] N:112 [GLY] 9:36 [C] ✔
N:112 [GLY] 9:3048 [C] N:112 [GLY] 9:48 [C] ❌ 1VQ8_N_9
N:23 [ARG] 9:3006 [C] N:23 [ARG] 9:6 [C] ❌ 1VQ8_N_9
N:39 [SER] 9:3026 [C] N:39 [SER] 9:26 [C] ❌ 1VQ8_N_9
N:40 [ASN] 9:3027 [C] N:40 [ASN] 9:27 [C] ❌ 1VQ8_N_9
N:62 [HIS] 9:3120 [A] N:62 [HIS] 9:120 [A] ❌ 1VQ8_N_9
N:7 [LYS] 9:3011 [A] N:7 [LYS] 9:11 [A] ❌ 1VQ8_N:7 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 5S ribosomal RNA 1.0 0.19 1.00 1.0 1.0 1.0 1.0 1.00 0.99 0.91 0.17


Other pairs involving 1VQ8_N_9 or 1YHQ_N_9

Total number of entries: 15

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_N_9 4Y4O_1S_1B 0.63 0.87 2.3 0.26 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 1YHQ_N_9 1.00 1.0 0.19 1.0 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 7RYG_N_B 0.63 0.86 1.72 0.18 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 6AZ3_O_8 0.83 0.9 1.77 0.43 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 7OF0_P_B 0.67 0.57 1.81 0.11 Ribonuclease H-like compare
1VQ8_N_9 7O9M_P_B 0.65 0.55 1.74 0.1 Ribonuclease H-like compare
1VQ8_N_9 7O7Y_BD_B7 0.84 0.91 1.74 0.38 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 6S0Z_M_B 0.71 0.83 2.22 0.24 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 7RYG_N_B 0.65 0.86 1.69 0.18 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 7O7Y_BD_B7 0.86 0.91 1.71 0.37 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 7OF0_P_B 0.69 0.56 1.79 0.11 Ribonuclease H-like compare
1YHQ_N_9 7O9M_P_B 0.66 0.55 1.72 0.1 Ribonuclease H-like compare
1YHQ_N_9 4Y4O_1S_1B 0.65 0.87 2.31 0.26 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 6S0Z_M_B 0.70 0.83 1.98 0.24 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 6AZ3_O_8 0.87 0.9 1.8 0.44 Ribonuclease H-like 5S ribosomal RNA compare