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All interfaces > All interologs > Interface groups > group123 > 1YHQ_N_9

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_N
1YHQ_9
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
N:1 [ALA] 9:11 [A] 3.49 9:68 [G] 69.0
N:1 [ALA] 9:14 [G] 3.04 9:67 [C] base:BB 69.0
N:1 [ALA] 9:15 [C] 3.7 9:66 [G] 69.0
N:1 [ALA] 9:67 [C] 4.72 9:14 [G] 69.0
N:1 [ALA] 9:68 [G] 3.45 9:11 [A] 69.0
N:2 [THR] 9:68 [G] 4.14 9:11 [A] 38.6
N:3 [GLY] 9:11 [A] 2.66 9:68 [G] base:BB 34.8
N:3 [GLY] 9:68 [G] 3.39 9:11 [A] 34.8
N:3 [GLY] 9:69 [U] 4.58 9:112 [U] 34.8
N:4 [PRO] 9:11 [A] 3.72 9:68 [G] 34.3
N:4 [PRO] 9:68 [G] 3.96 9:11 [A] 34.3
N:4 [PRO] 9:69 [U] 3.05 9:112 [U] 34.3
N:5 [ARG] 9:11 [A] 4.73 9:68 [G] 45.3
N:6 [TYR] 9:11 [A] 3.0 9:68 [G] base:BB 37.9
N:6 [TYR] 9:14 [G] 4.48 9:67 [C] 37.9
N:7 [LYS] 9:11 [A] 4.89 9:68 [G] 49.8
N:8 [VAL] 9:10 [C] 4.58 9:13 [A] 66.1
N:8 [VAL] 9:11 [A] 3.37 9:68 [G] 66.1
N:8 [VAL] 9:13 [A] 4.99 9:10 [C] 66.1
N:8 [VAL] 9:14 [G] 3.78 9:67 [C] 66.1
N:9 [PRO] 9:10 [C] 4.63 9:13 [A] 28.2
N:10 [MET] 9:10 [C] 3.35 9:13 [A] 54.4
N:11 [ARG] 9:7 [G] 3.32 9:116 [C] base:SC 78.7
N:11 [ARG] 9:8 [G] 2.46 9:115 [C] base:SC 78.7
N:11 [ARG] 9:9 [C] 3.56 9:114 [G] 78.7
N:11 [ARG] 9:10 [C] 2.98 9:13 [A] base:BB 78.7
N:11 [ARG] 9:13 [A] 4.08 9:10 [C] 78.7
N:11 [ARG] 9:114 [G] 2.97 9:9 [C] base:SC 78.7
N:11 [ARG] 9:115 [C] 3.15 9:8 [G] 78.7
N:11 [ARG] 9:116 [C] 4.56 9:7 [G] 78.7
N:12 [ARG] 9:6 [C] 2.97 9:117 [G] base/AA stacks 98.7
N:12 [ARG] 9:7 [G] 3.0 9:116 [C] 98.7
N:14 [ARG] 9:10 [C] 4.68 9:13 [A] 83.0
N:14 [ARG] 9:11 [A] 4.3 9:68 [G] 83.0
N:14 [ARG] 9:13 [A] 2.79 9:10 [C] base:SC 83.0
N:14 [ARG] 9:14 [G] 4.02 9:67 [C] 83.0
N:17 [ARG] 9:4 [G] 4.83 9:119 [C] 65.3
N:17 [ARG] 9:5 [G] 2.74 9:118 [C] 65.3
N:17 [ARG] 9:6 [C] 2.78 9:117 [G] 65.3
N:17 [ARG] 9:7 [G] 4.04 9:116 [C] 65.3
N:18 [THR] 9:7 [G] 2.66 9:116 [C] 99.0
N:20 [TYR] 9:7 [G] 4.87 9:116 [C] 98.6
N:20 [TYR] 9:8 [G] 2.69 9:115 [C] 98.6
N:20 [TYR] 9:10 [C] 3.54 9:13 [A] 98.6
N:23 [ARG] 9:6 [C] 4.94 9:117 [G] 98.9
N:23 [ARG] 9:7 [G] 2.78 9:116 [C] 98.9
N:23 [ARG] 9:8 [G] 2.75 9:115 [C] 98.9
N:33 [ARG] 9:6 [C] 2.85 9:117 [G] sugar:SC 94.7
N:33 [ARG] 9:7 [G] 3.25 9:116 [C] 94.7
N:35 [VAL] 9:5 [G] 4.18 9:118 [C] 91.4
N:35 [VAL] 9:6 [C] 3.59 9:117 [G] 91.4
N:37 [ARG] 9:5 [G] 3.5 9:118 [C] 96.3
N:37 [ARG] 9:6 [C] 2.25 9:117 [G] 96.3
N:37 [ARG] 9:7 [G] 4.49 9:116 [C] 96.3
N:38 [LYS] 9:28 [U] 4.06 9:54 [A] 50.3
N:38 [LYS] 9:47 [A] 4.11 9:33 [U] 50.3
N:38 [LYS] 9:48 [C] 2.64 9:32 [G] 50.3
N:39 [SER] 9:26 [C] 4.84 9:22 [G] 87.3
N:39 [SER] 9:27 [C] 2.71 9:55 [U] 87.3
N:39 [SER] 9:28 [U] 3.18 9:54 [A] 87.3
N:40 [ASN] 9:27 [C] 4.84 9:55 [U] 72.7
N:40 [ASN] 9:28 [U] 3.09 9:54 [A] 72.7
N:40 [ASN] 9:29 [C] 2.92 9:53 [G] 72.7
N:40 [ASN] 9:30 [C] 3.73 9:50 [G] 72.7
N:40 [ASN] 9:50 [G] 3.95 9:30 [C] 72.7
N:40 [ASN] 9:51 [A] 3.66 9:52 [A] 72.7
N:41 [LYS] 9:25 [G] 4.36 9:3 [A] 64.6
N:41 [LYS] 9:26 [C] 3.63 9:22 [G] 64.6
N:41 [LYS] 9:27 [C] 3.73 9:55 [U] 64.6
N:41 [LYS] 9:28 [U] 4.86 9:54 [A] 64.6
N:41 [LYS] 9:51 [A] 3.32 9:52 [A] 64.6
N:42 [HIS] 9:26 [C] 2.79 9:22 [G] 63.1
N:42 [HIS] 9:27 [C] 3.33 9:55 [U] 63.1
N:44 [ARG] 9:4 [G] 2.69 9:119 [C] base:SC, sugar:SC 38.3
N:44 [ARG] 9:5 [G] 3.5 9:118 [C] base/AA stacks 38.3
N:44 [ARG] 9:120 [A] 4.23 38.3
N:46 [GLN] 9:4 [G] 4.34 9:119 [C] 93.5
N:46 [GLN] 9:5 [G] 2.48 9:118 [C] base:SC, sugar:SC 93.5
N:46 [GLN] 9:6 [C] 3.61 9:117 [G] 93.5
N:46 [GLN] 9:119 [C] 4.06 9:4 [G] 93.5
N:48 [VAL] 9:6 [C] 3.68 9:117 [G] 74.9
N:52 [PRO] 9:8 [G] 4.09 9:115 [C] 1.3
N:53 [ASN] 9:7 [G] 2.91 9:116 [C] base:BB 28.4
N:53 [ASN] 9:8 [G] 3.42 9:115 [C] 28.4
N:53 [ASN] 9:116 [C] 4.47 9:7 [G] 28.4
N:53 [ASN] 9:117 [G] 3.73 9:6 [C] 28.4
N:54 [GLY] 9:7 [G] 3.28 9:116 [C] 91.4
N:54 [GLY] 9:8 [G] 3.57 9:115 [C] 91.4
N:54 [GLY] 9:117 [G] 3.9 9:6 [C] 91.4
N:55 [ASP] 9:6 [C] 2.81 9:117 [G] sugar:SC 99.0
N:55 [ASP] 9:7 [G] 2.86 9:116 [C] sugar:BB 99.0
N:55 [ASP] 9:117 [G] 2.95 9:6 [C] base:BB 99.0
N:55 [ASP] 9:118 [C] 3.43 9:5 [G] 99.0
N:56 [ASP] 9:117 [G] 4.9 9:6 [C] 37.8
N:56 [ASP] 9:118 [C] 3.23 9:5 [G] sugar:SC 37.8
N:57 [THR] 9:5 [G] 3.12 9:118 [C] base:SC 77.7
N:57 [THR] 9:118 [C] 3.02 9:5 [G] sugar:BB 77.7
N:57 [THR] 9:119 [C] 3.39 9:4 [G] 77.7
N:60 [SER] 9:119 [C] 3.23 9:4 [G] sugar:SC 68.7
N:60 [SER] 9:120 [A] 3.85 68.7
N:62 [HIS] 9:27 [C] 4.68 9:55 [U] 53.0
N:62 [HIS] 9:120 [A] 4.84 53.0
N:74 [PRO] 9:50 [G] 4.04 9:30 [C] 70.2
N:74 [PRO] 9:51 [A] 4.78 9:52 [A] 70.2
N:76 [GLY] 9:49 [G] 3.19 9:31 [C] 62.1
N:76 [GLY] 9:50 [G] 3.59 9:30 [C] 62.1
N:77 [ASN] 9:49 [G] 3.34 9:31 [C] 93.0
N:77 [ASN] 9:50 [G] 3.04 9:30 [C] 93.0
N:78 [MET] 9:48 [C] 4.13 9:32 [G] 60.9
N:78 [MET] 9:49 [G] 2.98 9:31 [C] 60.9
N:79 [PRO] 9:49 [G] 4.76 9:31 [C] 79.2
N:103 [ASP] 9:6 [C] 4.76 9:117 [G] 96.3
N:103 [ASP] 9:7 [G] 4.63 9:116 [C] 96.3
N:107 [ASN] 9:47 [A] 3.67 9:33 [U] 36.6
N:108 [SER] 9:46 [C] 3.13 47.8
N:108 [SER] 9:47 [A] 2.98 9:33 [U] 47.8
N:110 [THR] 9:36 [C] 4.84 59.6
N:110 [THR] 9:37 [C] 3.1 9:43 [G] 59.6
N:110 [THR] 9:46 [C] 4.0 59.6
N:110 [THR] 9:47 [A] 3.66 9:33 [U] 59.6
N:111 [PRO] 9:36 [C] 2.72 sugar:BB 71.4
N:111 [PRO] 9:37 [C] 3.84 9:43 [G] 71.4
N:112 [GLY] 9:36 [C] 3.48 70.8
N:112 [GLY] 9:48 [C] 4.99 9:32 [G] 70.8
N:113 [SER] 9:36 [C] 4.73 77.9
N:113 [SER] 9:47 [A] 3.58 9:33 [U] 77.9
N:113 [SER] 9:48 [C] 3.72 9:32 [G] 77.9
N:114 [LYS] 9:47 [A] 4.78 9:33 [U] 76.2
N:114 [LYS] 9:48 [C] 2.87 9:32 [G] 76.2
N:114 [LYS] 9:49 [G] 3.4 9:31 [C] 76.2
N:115 [VAL] 9:48 [C] 4.78 9:32 [G] 63.0
N:141 [ARG] 9:35 [C] 2.85 base:SC, base:SC 89.7
N:141 [ARG] 9:36 [C] 3.37 base/AA stacks 89.7
N:141 [ARG] 9:48 [C] 3.0 9:32 [G] sugar:SC 89.7
N:141 [ARG] 9:49 [G] 4.86 9:31 [C] 89.7
N:146 [HIS] 9:34 [A] 3.41 87.4
N:146 [HIS] 9:35 [C] 3.39 87.4
N:146 [HIS] 9:48 [C] 3.92 9:32 [G] 87.4
N:146 [HIS] 9:49 [G] 2.93 9:31 [C] 87.4
N:147 [ILE] 9:34 [A] 4.93 88.6
N:147 [ILE] 9:49 [G] 3.22 9:31 [C] 88.6
N:147 [ILE] 9:50 [G] 2.85 9:30 [C] 88.6
N:150 [TYR] 9:32 [G] 4.75 9:48 [C] 49.3
N:150 [TYR] 9:34 [A] 3.25 base/AA stacks 49.3
N:150 [TYR] 9:49 [G] 4.1 9:31 [C] 49.3
N:153 [GLN] 9:34 [A] 3.13 sugar:SC 3.4
N:158 [LEU] 9:49 [G] 3.8 9:31 [C] 54.0
N:158 [LEU] 9:50 [G] 3.84 9:30 [C] 54.0
N:158 [LEU] 9:51 [A] 4.28 9:52 [A] 54.0
N:159 [TYR] 9:49 [G] 4.8 9:31 [C] 13.8
N:159 [TYR] 9:50 [G] 2.74 9:30 [C] 13.8
N:159 [TYR] 9:51 [A] 3.26 9:52 [A] 13.8
N:160 [SER] 9:50 [G] 4.59 9:30 [C] 48.0
N:160 [SER] 9:51 [A] 2.78 9:52 [A] 48.0
N:160 [SER] 9:52 [A] 2.58 9:51 [A] 48.0
N:161 [GLY] 9:51 [A] 4.28 9:52 [A] 36.3

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group123 1YHQ_N_9 N: 50s ribosomal protein l18p, Haloarcula marismortui (natural) 9: 5s ribosomal RNA, Haloarcula marismortui (natural) P14123 Ribonuclease H-like 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_N_9 7RYG_N_B 0.65 0.86 1.69 0.18 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 7O7Y_BD_B7 0.86 0.91 1.71 0.37 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 7OF0_P_B 0.69 0.56 1.79 0.11 Ribonuclease H-like compare
1YHQ_N_9 7O9M_P_B 0.66 0.55 1.72 0.1 Ribonuclease H-like compare
1YHQ_N_9 4Y4O_1S_1B 0.65 0.87 2.31 0.26 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 6S0Z_M_B 0.70 0.83 1.98 0.24 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 6AZ3_O_8 0.87 0.9 1.8 0.44 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 1YHQ_N_9 1.00 1.0 0.19 1.0 Ribonuclease H-like 5S ribosomal RNA compare