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All interfaces > All interologs > Interface groups > group125 > 4OO8_A_B

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Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4OO8_A
4OO8_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:29 [SER] B:84 [A] 4.97 B:94 [U] 36.28
A:29 [SER] B:87 [G] 4.29 B:91 [C] 36.28
A:29 [SER] B:88 [A] 4.43 36.28
A:29 [SER] B:91 [C] 3.3 B:87 [G] base:SC 36.28
A:30 [LYS] B:83 [C] 3.32 B:95 [G] 64.58
A:30 [LYS] B:84 [A] 3.76 B:94 [U] 64.58
A:31 [LYS] B:83 [C] 3.93 B:95 [G] 67.68
A:31 [LYS] B:84 [A] 3.86 B:94 [U] 67.68
A:31 [LYS] B:93 [G] 3.69 B:85 [C] base:SC 67.68
A:31 [LYS] B:94 [U] 3.22 B:84 [A] base:SC 67.68
A:31 [LYS] B:95 [G] 3.86 B:83 [C] 67.68
A:33 [LYS] B:81 [G] 2.79 B:68 [A] base:BB 74.87
A:33 [LYS] B:82 [G] 3.53 B:96 [C] 74.87
A:34 [VAL] B:81 [G] 4.25 B:68 [A] 2.78
A:35 [LEU] B:69 [A] 4.73 B:80 [U] 61.75
A:35 [LEU] B:81 [G] 3.45 B:68 [A] 61.75
A:40 [ARG] B:91 [C] 3.54 B:87 [G] 14.78
A:40 [ARG] B:92 [G] 2.68 B:86 [C] 14.78
A:43 [ILE] B:91 [C] 3.62 B:87 [G] 76.01
A:43 [ILE] B:92 [G] 3.5 B:86 [C] 76.01
A:44 [LYS] B:91 [C] 3.06 B:87 [G] 76.68
A:44 [LYS] B:92 [G] 2.84 B:86 [C] 76.68
A:45 [LYS] B:91 [C] 3.85 B:87 [G] 83.52
A:46 [ASN] B:87 [G] 4.87 B:91 [C] 74.94
A:46 [ASN] B:88 [A] 3.22 base:SC, base:SC 74.94
A:46 [ASN] B:91 [C] 2.76 B:87 [G] base:SC base/AA stacks 74.94
A:55 [SER] B:65 [A] 4.29 58.64
A:56 [GLY] B:65 [A] 3.63 89.53
A:57 [GLU] B:64 [U] 2.71 sugar:BB 47.83
A:57 [GLU] B:65 [A] 2.92 47.83
A:58 [THR] B:12 [G] 4.58 C:9 [DC] 90.16
A:58 [THR] B:13 [C] 3.4 C:8 [DG] 90.16
A:58 [THR] B:64 [U] 3.35 90.16
A:59 [ALA] B:12 [G] 4.96 C:9 [DC] 98.67
A:59 [ALA] B:13 [C] 2.56 C:8 [DG] 98.67
A:59 [ALA] B:14 [G] 3.89 C:7 [DC] 98.67
A:59 [ALA] B:64 [U] 3.62 98.67
A:60 [GLU] B:12 [G] 4.57 C:9 [DC] 70.01
A:60 [GLU] B:13 [C] 3.65 C:8 [DG] 70.01
A:60 [GLU] B:14 [G] 5.0 C:7 [DC] 70.01
A:61 [ALA] B:63 [U] 4.64 51.99
A:62 [THR] B:63 [U] 2.71 sugar:SC 89.98
A:62 [THR] B:64 [U] 3.19 sugar:SC 89.98
A:63 [ARG] B:13 [C] 3.3 C:8 [DG] 98.97
A:63 [ARG] B:14 [G] 2.59 C:7 [DC] 98.97
A:63 [ARG] B:15 [C] 3.54 C:6 [DG] 98.97
A:65 [LYS] B:51 [A] 4.8 31.4
A:65 [LYS] B:63 [U] 3.26 31.4
A:66 [ARG] B:14 [G] 3.07 C:7 [DC] 98.97
A:66 [ARG] B:15 [C] 2.52 C:6 [DG] 98.97
A:66 [ARG] B:62 [G] 3.46 B:52 [A] 98.97
A:67 [THR] B:15 [C] 4.69 C:6 [DG] 81.13
A:67 [THR] B:16 [U] 4.04 C:5 [DA] 81.13
A:67 [THR] B:17 [U] 3.93 C:4 [DA] 81.13
A:68 [ALA] B:51 [A] 4.75 75.45
A:69 [ARG] B:51 [A] 3.32 98.97
A:69 [ARG] B:62 [G] 3.09 B:52 [A] base/AA stacks 98.97
A:69 [ARG] B:63 [U] 2.99 98.97
A:70 [ARG] B:15 [C] 2.83 C:6 [DG] 98.97
A:70 [ARG] B:16 [U] 2.85 C:5 [DA] 98.97
A:70 [ARG] B:60 [C] 4.86 B:54 [G] 98.97
A:70 [ARG] B:61 [C] 2.83 B:53 [G] 98.97
A:70 [ARG] B:62 [G] 4.91 B:52 [A] 98.97
A:71 [ARG] B:17 [U] 3.2 C:4 [DA] base/AA stacks 95.26
A:71 [ARG] B:18 [G] 2.91 C:3 [DC] base:SC 95.26
A:72 [TYR] B:20 [C] 4.14 C:1 [DG] 45.75
A:72 [TYR] B:21 [G] 4.19 B:50 [U] 45.75
A:72 [TYR] B:50 [U] 3.33 B:21 [G] base/AA stacks 45.75
A:72 [TYR] B:51 [A] 3.56 45.75
A:73 [THR] B:59 [U] 3.72 53.68
A:73 [THR] B:60 [C] 4.52 B:54 [G] 53.68
A:73 [THR] B:61 [C] 4.94 B:53 [G] 53.68
A:73 [THR] B:62 [G] 4.86 B:52 [A] 53.68
A:74 [ARG] B:16 [U] 2.69 C:5 [DA] 98.75
A:74 [ARG] B:17 [U] 2.74 C:4 [DA] 98.75
A:74 [ARG] B:59 [U] 3.3 98.75
A:74 [ARG] B:60 [C] 2.84 B:54 [G] 98.75
A:75 [ARG] B:49 [A] 4.67 B:22 [U] 88.95
A:75 [ARG] B:50 [U] 2.53 B:21 [G] base:SC 88.95
A:76 [LYS] B:49 [A] 3.01 B:22 [U] 73.21
A:76 [LYS] B:50 [U] 3.39 B:21 [G] 73.21
A:77 [ASN] B:59 [U] 2.75 base:SC 49.84
A:78 [ARG] B:18 [G] 3.14 C:3 [DC] 98.92
A:79 [ILE] B:48 [A] 3.87 B:23 [U] 76.6
A:81 [TYR] B:59 [U] 3.29 59.69
A:83 [GLN] B:48 [A] 4.19 B:23 [U] 69.92
A:100 [ARG] B:47 [A] 4.85 B:24 [U] 95.44
A:101 [LEU] B:47 [A] 2.38 B:24 [U] sugar:BB 85.31
A:101 [LEU] B:48 [A] 3.65 B:23 [U] 85.31
A:102 [GLU] B:47 [A] 4.45 B:24 [U] 55.91
A:102 [GLU] B:48 [A] 3.65 B:23 [U] 55.91
A:104 [SER] B:24 [U] 4.18 B:47 [A] 95.77
A:104 [SER] B:25 [U] 3.22 B:46 [A] sugar:BB 95.77
A:104 [SER] B:47 [A] 2.63 B:24 [U] base:SC, sugar:SC 95.77
A:104 [SER] B:48 [A] 3.6 B:23 [U] sugar:SC 95.77
A:105 [PHE] B:23 [U] 3.25 B:48 [A] 45.49
A:105 [PHE] B:24 [U] 2.68 B:47 [A] sugar:BB base/AA stacks 45.49
A:105 [PHE] B:25 [U] 3.71 B:46 [A] 45.49
A:105 [PHE] B:47 [A] 4.28 B:24 [U] 45.49
A:105 [PHE] B:48 [A] 3.38 B:23 [U] 45.49
A:106 [LEU] B:24 [U] 4.3 B:47 [A] 60.0
A:106 [LEU] B:25 [U] 3.64 B:46 [A] 60.0
A:107 [VAL] B:24 [U] 4.03 B:47 [A] 9.55
A:107 [VAL] B:25 [U] 3.99 B:46 [A] 9.55
A:108 [GLU] B:25 [U] 4.88 B:46 [A] 20.99
A:108 [GLU] B:26 [A] 4.18 B:45 [U] 20.99
A:111 [LYS] B:25 [U] 3.45 B:46 [A] sugar:SC 78.39
A:115 [ARG] B:25 [U] 4.46 B:46 [A] 44.38
A:115 [ARG] B:26 [A] 3.02 B:45 [U] 44.38
A:115 [ARG] B:27 [G] 2.94 44.38
A:115 [ARG] B:28 [A] 4.91 44.38
A:116 [HIS] B:26 [A] 3.41 B:45 [U] 43.75
A:116 [HIS] B:27 [G] 3.06 43.75
A:117 [PRO] B:26 [A] 3.99 B:45 [U] 47.91
A:122 [ILE] B:27 [G] 4.18 36.05
A:122 [ILE] B:28 [A] 3.78 36.05
A:123 [VAL] B:28 [A] 4.13 67.78
A:125 [GLU] B:26 [A] 3.68 B:45 [U] sugar:SC 84.24
A:125 [GLU] B:27 [G] 4.62 84.24
A:126 [VAL] B:27 [G] 3.61 63.64
A:126 [VAL] B:28 [A] 3.79 63.64
A:129 [HIS] B:26 [A] 4.17 B:45 [U] 66.47
A:129 [HIS] B:27 [G] 3.05 66.47
A:129 [HIS] B:45 [U] 4.3 B:26 [A] 66.47
A:133 [PRO] B:45 [U] 3.6 B:26 [A] 94.4
A:134 [THR] B:44 [U] 3.65 98.97
A:134 [THR] B:45 [U] 3.54 B:26 [A] 98.97
A:135 [ILE] B:45 [U] 3.23 B:26 [A] sugar:BB 96.37
A:135 [ILE] B:46 [A] 3.72 B:25 [U] 96.37
A:136 [TYR] B:45 [U] 4.85 B:26 [A] 80.36
A:136 [TYR] B:46 [A] 4.51 B:25 [U] 80.36
A:155 [TYR] B:48 [A] 4.52 B:23 [U] 94.33
A:156 [LEU] B:47 [A] 4.6 B:24 [U] 95.54
A:159 [ALA] B:47 [A] 4.8 B:24 [U] 91.22
A:160 [HIS] B:45 [U] 4.96 B:26 [A] 87.61
A:160 [HIS] B:46 [A] 3.01 B:25 [U] 87.61
A:160 [HIS] B:47 [A] 4.05 B:24 [U] 87.61
A:163 [LYS] B:19 [G] 4.61 C:2 [DC] 97.96
A:163 [LYS] B:47 [A] 4.43 B:24 [U] 97.96
A:163 [LYS] B:48 [A] 2.56 B:23 [U] 97.96
A:163 [LYS] B:49 [A] 4.84 B:22 [U] 97.96
A:164 [PHE] B:18 [G] 4.97 C:3 [DC] 72.24
A:164 [PHE] B:19 [G] 3.1 C:2 [DC] 72.24
A:164 [PHE] B:47 [A] 3.75 B:24 [U] 72.24
A:165 [ARG] B:17 [U] 3.08 C:4 [DA] 98.97
A:165 [ARG] B:18 [G] 2.65 C:3 [DC] 98.97
A:165 [ARG] B:19 [G] 3.35 C:2 [DC] 98.97
A:166 [GLY] B:17 [U] 4.99 C:4 [DA] 98.85
A:166 [GLY] B:18 [G] 3.24 C:3 [DC] 98.85
A:166 [GLY] B:19 [G] 3.07 C:2 [DC] 98.85
A:167 [HIS] B:17 [U] 4.68 C:4 [DA] 88.29
A:167 [HIS] B:18 [G] 3.57 C:3 [DC] 88.29
A:168 [PHE] B:17 [U] 3.94 C:4 [DA] 98.85
A:168 [PHE] B:18 [G] 4.77 C:3 [DC] 98.85
A:324 [ARG] B:44 [U] 4.41 43.9
A:325 [TYR] B:43 [G] 4.56 90.87
A:325 [TYR] B:44 [U] 3.22 base:BB base/AA stacks 90.87
A:328 [HIS] B:44 [U] 3.14 base/AA stacks 94.81
A:329 [HIS] B:43 [G] 4.99 61.8
A:329 [HIS] B:44 [U] 3.26 61.8
A:332 [LEU] B:43 [G] 3.94 94.48
A:332 [LEU] B:44 [U] 4.8 94.48
A:336 [LYS] B:42 [A] 3.6 96.65
A:336 [LYS] B:43 [G] 3.13 base:SC, base:SC 96.65
A:340 [ARG] B:40 [C] 3.34 B:29 [G] 62.09
A:340 [ARG] B:41 [A] 3.46 62.09
A:347 [TYR] B:41 [A] 3.69 72.54
A:347 [TYR] B:43 [G] 4.94 72.54
A:351 [PHE] B:42 [A] 3.1 base:BB 91.3
A:351 [PHE] B:43 [G] 2.78 base:BB, base:BB 91.3
A:352 [PHE] B:40 [C] 4.07 B:29 [G] 59.12
A:352 [PHE] B:41 [A] 3.33 59.12
A:352 [PHE] B:42 [A] 3.62 base/AA stacks 59.12
A:352 [PHE] B:43 [G] 4.96 59.12
A:359 [TYR] B:43 [G] 2.75 sugar:SC 90.61
A:359 [TYR] B:44 [U] 4.19 90.61
A:360 [ALA] B:43 [G] 3.64 54.38
A:363 [ILE] B:43 [G] 3.34 71.53
A:363 [ILE] B:44 [U] 4.12 71.53
A:364 [ASP] B:43 [G] 3.24 base:SC 59.7
A:366 [GLY] B:22 [U] 3.55 B:49 [A] 39.63
A:400 [ARG] B:44 [U] 3.98 71.57
A:401 [LYS] B:44 [U] 3.73 84.93
A:401 [LYS] B:45 [U] 3.38 B:26 [A] 84.93
A:402 [GLN] B:20 [C] 4.72 C:1 [DG] 81.05
A:402 [GLN] B:44 [U] 2.54 base:SC, sugar:SC 81.05
A:402 [GLN] B:45 [U] 2.73 B:26 [A] 81.05
A:403 [ARG] B:19 [G] 4.75 C:2 [DC] 83.16
A:403 [ARG] B:20 [C] 2.62 C:1 [DG] 83.16
A:403 [ARG] B:21 [G] 4.17 B:50 [U] 83.16
A:403 [ARG] B:45 [U] 2.86 B:26 [A] 83.16
A:403 [ARG] B:46 [A] 2.86 B:25 [U] 83.16
A:404 [THR] B:19 [G] 3.14 C:2 [DC] sugar:BB 75.72
A:404 [THR] B:20 [C] 2.89 C:1 [DG] 75.72
A:405 [PHE] B:19 [G] 3.16 C:2 [DC] 55.49
A:405 [PHE] B:20 [C] 3.83 C:1 [DG] 55.49
A:406 [ASP] B:19 [G] 4.11 C:2 [DC] 53.61
A:407 [ASN] B:19 [G] 3.29 C:2 [DC] 98.97
A:407 [ASN] B:20 [C] 2.94 C:1 [DG] 98.97
A:408 [GLY] B:18 [G] 3.67 C:3 [DC] sugar:BB 73.86
A:408 [GLY] B:19 [G] 3.5 C:2 [DC] 73.86
A:410 [ILE] B:18 [G] 4.8 C:3 [DC] 96.55
A:415 [HIS] B:19 [G] 4.83 C:2 [DC] 86.75
A:446 [PHE] B:59 [U] 3.24 96.07
A:447 [ARG] B:16 [U] 2.89 C:5 [DA] base:SC, sugar:SC 89.38
A:447 [ARG] B:17 [U] 3.58 C:4 [DA] 89.38
A:448 [ILE] B:16 [U] 2.65 C:5 [DA] sugar:BB 91.6
A:448 [ILE] B:17 [U] 4.0 C:4 [DA] 91.6
A:448 [ILE] B:60 [C] 4.98 B:54 [G] 91.6
A:449 [PRO] B:15 [C] 4.34 C:6 [DG] 98.65
A:449 [PRO] B:16 [U] 4.02 C:5 [DA] 98.65
A:450 [TYR] B:14 [G] 4.76 C:7 [DC] 97.71
A:450 [TYR] B:15 [C] 2.58 C:6 [DG] sugar:BB 97.71
A:450 [TYR] B:16 [U] 3.47 C:5 [DA] 97.71
A:451 [TYR] B:15 [C] 4.62 C:6 [DG] 95.82
A:452 [VAL] B:15 [C] 4.8 C:6 [DG] 93.95
A:453 [GLY] B:15 [C] 3.33 C:6 [DG] 98.85
A:453 [GLY] B:16 [U] 3.7 C:5 [DA] 98.85
A:454 [PRO] B:15 [C] 3.26 C:6 [DG] 97.33
A:454 [PRO] B:16 [U] 3.33 C:5 [DA] 97.33
A:454 [PRO] B:60 [C] 4.02 B:54 [G] 97.33
A:454 [PRO] B:61 [C] 3.99 B:53 [G] 97.33
A:455 [LEU] B:58 [G] 2.7 B:55 [C] sugar:BB 88.84
A:455 [LEU] B:59 [U] 3.67 88.84
A:455 [LEU] B:60 [C] 3.13 B:54 [G] 88.84
A:456 [ALA] B:58 [G] 3.25 B:55 [C] 79.66
A:456 [ALA] B:60 [C] 3.64 B:54 [G] 79.66
A:457 [ARG] B:57 [A] 4.19 47.23
A:457 [ARG] B:58 [G] 3.24 B:55 [C] 47.23
A:457 [ARG] B:60 [C] 4.97 B:54 [G] 47.23
A:459 [ASN] B:56 [U] 3.06 base/AA stacks 46.31
A:459 [ASN] B:60 [C] 3.59 B:54 [G] 46.31
A:459 [ASN] B:61 [C] 4.12 B:53 [G] 46.31
A:460 [SER] B:60 [C] 3.42 B:54 [G] 72.62
A:460 [SER] B:61 [C] 2.62 B:53 [G] 72.62
A:461 [ARG] B:14 [G] 4.79 C:7 [DC] 48.03
A:461 [ARG] B:62 [G] 4.92 B:52 [A] 48.03
A:461 [ARG] B:64 [U] 4.76 48.03
A:462 [PHE] B:14 [G] 3.71 C:7 [DC] 72.05
A:462 [PHE] B:15 [C] 3.51 C:6 [DG] 72.05
A:462 [PHE] B:61 [C] 3.94 B:53 [G] 72.05
A:462 [PHE] B:62 [G] 3.37 B:52 [A] 72.05
A:464 [TRP] B:14 [G] 3.8 C:7 [DC] 96.83
A:464 [TRP] B:15 [C] 3.66 C:6 [DG] 96.83
A:467 [ARG] B:58 [G] 3.36 B:55 [C] 86.03
A:467 [ARG] B:59 [U] 2.38 86.03
A:471 [GLU] B:59 [U] 4.28 64.7
A:472 [THR] B:58 [G] 4.49 B:55 [C] 56.45
A:472 [THR] B:59 [U] 3.16 56.45
A:473 [ILE] B:59 [U] 2.89 90.59
A:474 [THR] B:59 [U] 4.28 73.57
A:475 [PRO] B:59 [U] 3.25 98.6
A:491 [PHE] B:14 [G] 4.06 C:7 [DC] 98.49
A:500 [LYS] B:3 [A] 3.92 C:18 [DT] 89.75
A:510 [LYS] B:5 [A] 2.84 C:16 [DT] 84.22
A:510 [LYS] B:6 [U] 3.25 C:15 [DA] 84.22
A:515 [TYR] B:4 [A] 3.39 C:17 [DT] 97.56
A:515 [TYR] B:5 [A] 2.44 C:16 [DT] 97.56
A:518 [PHE] B:4 [A] 4.16 C:17 [DT] 70.5
A:519 [THR] B:4 [A] 4.85 C:17 [DT] 58.73
A:519 [THR] B:5 [A] 3.62 C:16 [DT] 58.73
A:522 [ASN] B:4 [A] 4.44 C:17 [DT] 94.66
A:523 [GLU] B:5 [A] 4.74 C:16 [DT] 97.86
A:588 [ASN] B:5 [A] 3.88 C:16 [DT] base:SC 79.16
A:588 [ASN] B:6 [U] 3.2 C:15 [DA] 79.16
A:589 [ALA] B:5 [A] 3.63 C:16 [DT] 82.14
A:589 [ALA] B:6 [U] 4.53 C:15 [DA] 82.14
A:660 [GLY] B:5 [A] 4.64 C:16 [DT] 92.13
A:661 [ARG] B:4 [A] 2.71 C:17 [DT] 81.71
A:661 [ARG] B:5 [A] 3.43 C:16 [DT] 81.71
A:662 [LEU] B:4 [A] 4.36 C:17 [DT] 83.62
A:693 [PHE] B:3 [A] 4.41 C:18 [DT] 79.84
A:693 [PHE] B:4 [A] 4.97 C:17 [DT] 79.84
A:694 [MET] B:2 [G] 3.53 C:19 [DC] 93.11
A:694 [MET] B:3 [A] 3.29 C:18 [DT] 93.11
A:719 [SER] B:76 [A] 3.3 B:73 [G] 66.93
A:719 [SER] B:77 [A] 3.63 B:72 [U] 66.93
A:720 [LEU] B:77 [A] 4.7 B:72 [U] 46.1
A:721 [HIS] B:65 [A] 3.0 sugar:SC 49.31
A:721 [HIS] B:66 [U] 3.37 49.31
A:721 [HIS] B:77 [A] 3.57 B:72 [U] 49.31
A:725 [ALA] B:65 [A] 4.5 53.61
A:731 [PRO] B:65 [A] 4.88 92.63
A:734 [LYS] B:66 [U] 4.98 94.23
A:735 [LYS] B:66 [U] 3.55 90.87
A:738 [LEU] B:66 [U] 3.68 63.13
A:738 [LEU] B:67 [C] 4.23 63.13
A:739 [GLN] B:66 [U] 4.75 89.88
A:739 [GLN] B:67 [C] 3.18 89.88
A:742 [LYS] B:66 [U] 4.3 60.44
A:742 [LYS] B:67 [C] 2.68 60.44
A:749 [LYS] B:80 [U] 4.31 B:69 [A] 59.6
A:750 [VAL] B:83 [C] 4.14 B:95 [G] 78.17
A:753 [ARG] B:79 [G] 4.5 B:70 [C] 75.58
A:753 [ARG] B:80 [U] 3.8 B:69 [A] 75.58
A:779 [GLU] B:10 [G] 4.8 C:11 [DC] 87.43
A:783 [ARG] B:8 [A] 4.4 C:13 [DT] 62.93
A:783 [ARG] B:9 [G] 3.42 C:12 [DC] 62.93
A:893 [THR] B:8 [A] 3.59 C:13 [DT] 90.41
A:894 [GLN] B:7 [U] 3.44 C:14 [DA] 47.62
A:894 [GLN] B:8 [A] 4.35 C:13 [DT] 47.62
A:923 [GLU] B:1 [G] 4.53 C:20 [DC] 92.74
A:926 [GLN] B:2 [G] 3.14 C:19 [DC] 98.97
A:929 [LYS] B:1 [G] 3.41 C:20 [DC] 95.56
A:929 [LYS] B:2 [G] 3.29 C:19 [DC] 95.56
A:938 [ARG] B:78 [A] 4.58 B:71 [U] 27.84
A:981 [TYR] B:90 [U] 3.09 base:SC 50.84
A:1008 [PHE] B:1 [G] 4.32 C:20 [DC] 0.0
A:1009 [VAL] B:1 [G] 3.02 C:20 [DC] sugar:BB 0.0
A:1010 [TYR] B:1 [G] 3.75 C:20 [DC] 0.0
A:1011 [GLY] B:1 [G] 4.02 C:20 [DC] 0.0
A:1013 [TYR] B:1 [G] 3.47 C:20 [DC] base/AA stacks 0.0
A:1089 [MET] B:88 [A] 4.04 0.0
A:1090 [PRO] B:88 [A] 3.54 0.0
A:1090 [PRO] B:89 [G] 3.86 0.0
A:1090 [PRO] B:90 [U] 3.48 0.0
A:1091 [GLN] B:88 [A] 4.71 0.0
A:1091 [GLN] B:90 [U] 3.47 0.0
A:1091 [GLN] B:91 [C] 3.3 B:87 [G] 0.0
A:1097 [LYS] B:67 [C] 3.04 0.0
A:1097 [LYS] B:68 [A] 4.25 B:81 [G] 0.0
A:1098 [THR] B:67 [C] 4.67 0.0
A:1098 [THR] B:68 [A] 4.25 B:81 [G] 0.0
A:1099 [GLU] B:67 [C] 3.31 base/AA stacks 0.0
A:1100 [VAL] B:67 [C] 2.94 base:BB, base:BB 0.0
A:1102 [THR] B:63 [U] 4.6 0.0
A:1102 [THR] B:64 [U] 2.7 0.0
A:1102 [THR] B:65 [A] 4.53 0.0
A:1102 [THR] B:66 [U] 3.98 0.0
A:1103 [GLY] B:51 [A] 3.29 base:BB 0.0
A:1103 [GLY] B:63 [U] 3.36 0.0
A:1103 [GLY] B:64 [U] 3.69 0.0
A:1104 [GLY] B:51 [A] 3.4 0.0
A:1104 [GLY] B:63 [U] 3.0 0.0
A:1105 [PHE] B:51 [A] 2.99 base:BB base/AA stacks 0.0
A:1105 [PHE] B:52 [A] 3.54 B:62 [G] 0.0
A:1108 [GLU] B:63 [U] 4.45 0.0
A:1109 [SER] B:22 [U] 4.98 B:49 [A] 0.0
A:1110 [ILE] B:22 [U] 2.84 B:49 [A] sugar:BB 0.0
A:1110 [ILE] B:23 [U] 3.23 B:48 [A] 0.0
A:1110 [ILE] B:49 [A] 4.6 B:22 [U] 0.0
A:1111 [LEU] B:22 [U] 4.94 B:49 [A] 0.0
A:1111 [LEU] B:23 [U] 3.77 B:48 [A] 0.0
A:1112 [PRO] B:23 [U] 3.74 B:48 [A] 0.0
A:1112 [PRO] B:24 [U] 3.52 B:47 [A] 0.0
A:1113 [LYS] B:23 [U] 4.23 B:48 [A] 0.0
A:1113 [LYS] B:24 [U] 3.09 B:47 [A] 0.0
A:1113 [LYS] B:25 [U] 3.82 B:46 [A] 0.0
A:1121 [ALA] B:52 [A] 4.67 B:62 [G] 0.0
A:1122 [ARG] B:23 [U] 2.96 B:48 [A] base:SC 0.0
A:1122 [ARG] B:49 [A] 2.57 B:22 [U] base:SC 0.0
A:1122 [ARG] B:50 [U] 4.42 B:21 [G] 0.0
A:1122 [ARG] B:52 [A] 3.01 B:62 [G] 0.0
A:1122 [ARG] B:53 [G] 4.52 B:61 [C] 0.0
A:1123 [LYS] B:49 [A] 3.45 B:22 [U] 0.0
A:1123 [LYS] B:50 [U] 3.52 B:21 [G] 0.0
A:1123 [LYS] B:52 [A] 2.73 B:62 [G] 0.0
A:1123 [LYS] B:53 [G] 3.12 B:61 [C] 0.0
A:1124 [LYS] B:52 [A] 3.83 B:62 [G] 0.0
A:1124 [LYS] B:53 [G] 3.03 B:61 [C] 0.0
A:1126 [TRP] B:48 [A] 4.71 B:23 [U] 0.0
A:1126 [TRP] B:49 [A] 3.39 B:22 [U] 0.0
A:1130 [LYS] B:24 [U] 3.23 B:47 [A] 0.0
A:1131 [TYR] B:23 [U] 2.5 B:48 [A] sugar:BB 0.0
A:1131 [TYR] B:24 [U] 3.56 B:47 [A] 0.0
A:1132 [GLY] B:23 [U] 4.59 B:48 [A] 0.0
A:1132 [GLY] B:24 [U] 4.75 B:47 [A] 0.0
A:1134 [PHE] B:51 [A] 4.08 0.0
A:1168 [ILE] B:51 [A] 4.91 0.0
A:1169 [MET] B:52 [A] 3.35 B:62 [G] 0.0
A:1172 [SER] B:52 [A] 4.65 B:62 [G] 0.0
A:1197 [LYS] B:67 [C] 4.85 0.0
A:1211 [LYS] B:91 [C] 3.96 B:87 [G] 0.0
A:1225 [GLU] B:90 [U] 2.95 base:BB 0.0
A:1226 [LEU] B:89 [G] 3.33 0.0
A:1226 [LEU] B:90 [U] 4.15 0.0
A:1227 [ALA] B:89 [G] 4.19 0.0
A:1227 [ALA] B:90 [U] 3.24 base:BB 0.0
A:1229 [PRO] B:89 [G] 4.31 0.0
A:1272 [GLN] B:89 [G] 2.43 base:SC, base:SC 0.0
A:1275 [GLU] B:89 [G] 4.95 0.0
A:1276 [PHE] B:89 [G] 4.61 0.0
A:1276 [PHE] B:90 [U] 4.17 0.0
A:1279 [ARG] B:89 [G] 4.52 0.0
A:1279 [ARG] B:90 [U] 4.49 0.0
A:1349 [HIS] B:68 [A] 3.01 B:81 [G] sugar:SC 0.0
A:1349 [HIS] B:69 [A] 3.5 B:80 [U] 0.0
A:1350 [GLN] B:68 [A] 3.1 B:81 [G] 0.0
A:1351 [SER] B:68 [A] 3.74 B:81 [G] 0.0
A:1356 [TYR] B:68 [A] 3.92 B:81 [G] 0.0
A:1356 [TYR] B:81 [G] 3.36 B:68 [A] base/AA stacks 0.0
A:1357 [GLU] B:68 [A] 4.67 B:81 [G] 0.0
A:1357 [GLU] B:81 [G] 3.59 B:68 [A] 0.0
A:1358 [THR] B:68 [A] 4.0 B:81 [G] 0.0
A:1358 [THR] B:69 [A] 3.96 B:80 [U] 0.0
A:1358 [THR] B:81 [G] 4.59 B:68 [A] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group125 4OO8_A_B A: Crispr-associated endonuclease cas9/csn1, Streptococcus pyogenes serotype m1 (genetically engineered) B: RNA (97-mer) Q99ZW2 Ribonuclease H-like & His-Me finger endonucleases & CRISPR-associated endonuclease Cas9 alpha-helical lobe & CRISPR-associated endonuclease Cas9 C-terminal domain & SSHS domain in CRISPR-associated endonuclease Cas9 ✘

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4OO8_A_B 5FW1_B_A 0.94 0.93 1.42 0.73 Ribonuclease H-like & His-Me finger endonucleases & CRISPR-associated endonuclease Cas9 alpha-helical lobe & CRISPR-associated endonuclease Cas9 C-terminal domain & SSHS domain in CRISPR-associated endonuclease Cas9 compare
4OO8_A_B 5B2T_B_A 0.97 0.93 1.46 0.97 Ribonuclease H-like & His-Me finger endonucleases & CRISPR-associated endonuclease Cas9 alpha-helical lobe & CRISPR-associated endonuclease Cas9 C-terminal domain & SSHS domain in CRISPR-associated endonuclease Cas9 compare
4OO8_A_B 5B2R_B_A 0.96 0.92 1.49 0.97 Ribonuclease H-like & His-Me finger endonucleases & CRISPR-associated endonuclease Cas9 alpha-helical lobe & CRISPR-associated endonuclease Cas9 C-terminal domain & SSHS domain in CRISPR-associated endonuclease Cas9 compare
4OO8_A_B 5FQ5_B_A 0.95 0.92 1.5 0.72 Ribonuclease H-like & His-Me finger endonucleases & CRISPR-associated endonuclease Cas9 alpha-helical lobe & CRISPR-associated endonuclease Cas9 C-terminal domain & SSHS domain in CRISPR-associated endonuclease Cas9 compare
4OO8_A_B 5B2S_B_A 0.96 0.92 1.52 0.97 Ribonuclease H-like & His-Me finger endonucleases & CRISPR-associated endonuclease Cas9 alpha-helical lobe & CRISPR-associated endonuclease Cas9 C-terminal domain & SSHS domain in CRISPR-associated endonuclease Cas9 compare
4OO8_A_B 7OX9_B_A 0.96 0.93 1.58 0.72 Ribonuclease H-like & His-Me finger endonucleases & CRISPR-associated endonuclease Cas9 alpha-helical lobe & CRISPR-associated endonuclease Cas9 C-terminal domain & SSHS domain in CRISPR-associated endonuclease Cas9 compare
4OO8_A_B 7EL1_A_B 0.65 0.71 2.09 0.23 Ribonuclease H-like & His-Me finger endonucleases & CRISPR-associated endonuclease Cas9 alpha-helical lobe & SSHS domain in CRISPR-associated endonuclease Cas9 compare
4OO8_A_B 5X2H_A_B 0.54 0.74 3.37 0.16 Ribonuclease H-like & CRISPR-associated endonuclease Cas9 alpha-helical lobe & CRISPR-associated endonuclease Cas9 C-terminal domain & SSHS domain in CRISPR-associated endonuclease Cas9 compare