Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
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Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
6AZ3_B
|
6AZ3_5
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
B:21 [ARG] | 5:15 [A] | 3.4 | 5:106 [G] | 98.2 | ||
B:21 [ARG] | 5:16 [A] | 4.8 | 98.2 | |||
B:21 [ARG] | 5:17 [C] | 4.26 | 98.2 | |||
B:21 [ARG] | 5:18 [G] | 2.77 | base:SC, base:SC | 98.2 | ||
B:21 [ARG] | 5:19 [A] | 3.15 | 5:14 [A] | 98.2 | ||
B:25 [ILE] | 5:13 [C] | 3.5 | 42.7 | |||
B:25 [ILE] | 5:21 [A] | 3.42 | 5:11 [U] | 42.7 | ||
B:25 [ILE] | 5:22 [G] | 4.88 | 5:10 [C] | 42.7 | ||
B:116 [ARG] | 5:23 [A] | 3.44 | 5:9 [U] | 80.2 | ||
B:116 [ARG] | 5:24 [A] | 3.35 | 80.2 | |||
B:117 [ARG] | 5:22 [G] | 2.89 | 5:10 [C] | 38.0 | ||
B:118 [TYR] | 5:5 [U] | 4.17 | 5:129 [A] | 52.7 | ||
B:119 [TYR] | 5:3 [C] | 4.94 | 5:131 [A] | 56.8 | ||
B:119 [TYR] | 5:4 [G] | 3.11 | 5:130 [C] | 56.8 | ||
B:119 [TYR] | 5:5 [U] | 3.85 | 5:129 [A] | 56.8 | ||
B:120 [LYS] | 5:5 [U] | 2.97 | 5:129 [A] | 85.1 | ||
B:120 [LYS] | 5:6 [C] | 3.23 | 5:128 [G] | 85.1 | ||
B:120 [LYS] | 5:23 [A] | 4.68 | 5:9 [U] | 85.1 | ||
B:120 [LYS] | 5:24 [A] | 3.3 | base:BB | 85.1 | ||
B:121 [ASN] | 5:5 [U] | 4.16 | 5:129 [A] | 42.1 | ||
B:121 [ASN] | 5:24 [A] | 3.18 | base/AA stacks | 42.1 | ||
B:123 [LYS] | 5:24 [A] | 3.59 | 46.0 | |||
B:123 [LYS] | 5:25 [C] | 3.29 | 46.0 | |||
B:123 [LYS] | 5:26 [A] | 2.74 | 5:123 [U] | 46.0 | ||
B:124 [GLN] | 5:25 [C] | 4.6 | 21.9 | |||
B:124 [GLN] | 5:126 [G] | 3.66 | 5:8 [C] | 21.9 | ||
B:125 [SER] | 5:4 [G] | 3.3 | 5:130 [C] | 67.1 | ||
B:126 [ALA] | 5:3 [C] | 4.0 | 5:131 [A] | 79.1 | ||
B:126 [ALA] | 5:4 [G] | 3.2 | 5:130 [C] | 79.1 | ||
B:127 [GLN] | 5:4 [G] | 4.03 | 5:130 [C] | 62.4 | ||
B:128 [LEU] | 5:3 [C] | 4.75 | 5:131 [A] | 50.7 | ||
B:174 [HIS] | 5:27 [U] | 4.3 | 58.4 | |||
B:174 [HIS] | 5:28 [G] | 4.24 | 5:122 [C] | 58.4 | ||
B:174 [HIS] | 5:109 [C] | 3.88 | 5:33 [G] | 58.4 | ||
B:174 [HIS] | 5:110 [U] | 2.9 | 58.4 | |||
B:175 [ARG] | 5:12 [C] | 4.31 | 5:20 [G] | 60.7 | ||
B:175 [ARG] | 5:13 [C] | 4.43 | 60.7 | |||
B:175 [ARG] | 5:106 [G] | 4.09 | 5:15 [A] | 60.7 | ||
B:175 [ARG] | 5:107 [G] | 2.87 | 5:35 [C] | 60.7 | ||
B:175 [ARG] | 5:108 [C] | 2.94 | 5:34 [G] | 60.7 | ||
B:176 [VAL] | 5:13 [C] | 3.46 | 46.0 | |||
B:177 [GLY] | 5:13 [C] | 4.11 | 47.4 | |||
B:177 [GLY] | 5:22 [G] | 2.98 | 5:10 [C] | 47.4 | ||
B:177 [GLY] | 5:23 [A] | 3.37 | 5:9 [U] | 47.4 | ||
B:178 [VAL] | 5:13 [C] | 4.43 | 80.3 | |||
B:178 [VAL] | 5:22 [G] | 3.29 | 5:10 [C] | 80.3 | ||
B:178 [VAL] | 5:23 [A] | 4.23 | 5:9 [U] | 80.3 | ||
B:179 [LYS] | 5:22 [G] | 3.71 | 5:10 [C] | 97.9 | ||
B:179 [LYS] | 5:23 [A] | 3.12 | 5:9 [U] | 97.9 | ||
B:179 [LYS] | 5:24 [A] | 2.74 | 97.9 | |||
B:179 [LYS] | 5:26 [A] | 3.74 | 5:123 [U] | 97.9 | ||
B:180 [LYS] | 5:22 [G] | 4.36 | 5:10 [C] | 71.6 | ||
B:180 [LYS] | 5:23 [A] | 3.07 | 5:9 [U] | 71.6 | ||
B:182 [HIS] | 5:22 [G] | 4.14 | 5:10 [C] | 74.7 | ||
B:226 [THR] | 5:14 [A] | 4.45 | 5:19 [A] | 98.0 | ||
B:227 [LYS] | 5:14 [A] | 3.58 | 5:19 [A] | 87.1 | ||
B:228 [GLY] | 5:14 [A] | 2.78 | 5:19 [A] | 98.6 | ||
B:228 [GLY] | 5:15 [A] | 3.32 | 5:106 [G] | 98.6 | ||
B:229 [HIS] | 5:15 [A] | 3.62 | 5:106 [G] | 76.9 | ||
B:230 [GLY] | 5:15 [A] | 3.14 | 5:106 [G] | 96.2 | ||
B:230 [GLY] | 5:16 [A] | 3.6 | 96.2 | |||
B:231 [THR] | 5:15 [A] | 4.67 | 5:106 [G] | 47.2 | ||
B:231 [THR] | 5:16 [A] | 2.82 | 47.2 | |||
B:274 [GLN] | 5:14 [A] | 4.78 | 5:19 [A] | 95.0 | ||
B:274 [GLN] | 5:15 [A] | 2.71 | 5:106 [G] | 95.0 | ||
B:275 [HIS] | 5:15 [A] | 4.42 | 5:106 [G] | 71.0 | ||
B:276 [GLY] | 5:15 [A] | 4.71 | 5:106 [G] | 98.5 | ||
B:277 [TYR] | 5:14 [A] | 3.67 | 5:19 [A] | 66.0 | ||
B:277 [TYR] | 5:15 [A] | 4.32 | 5:106 [G] | 66.0 | ||
B:277 [TYR] | 5:20 [G] | 3.67 | 5:12 [C] | 66.0 | ||
B:315 [MET] | 5:36 [U] | 3.54 | 5:102 [U] | 46.7 | ||
B:315 [MET] | 5:37 [G] | 4.25 | 5:101 [C] | 46.7 | ||
B:316 [GLY] | 5:35 [C] | 4.88 | 5:107 [G] | 67.0 | ||
B:316 [GLY] | 5:36 [U] | 3.8 | 5:102 [U] | 67.0 | ||
B:316 [GLY] | 5:107 [G] | 3.97 | 5:35 [C] | 67.0 | ||
B:316 [GLY] | 5:108 [C] | 3.28 | 5:34 [G] | 67.0 | ||
B:317 [GLY] | 5:108 [C] | 4.25 | 5:34 [G] | 88.5 | ||
B:318 [PHE] | 5:107 [G] | 4.03 | 5:35 [C] | 79.5 | ||
B:318 [PHE] | 5:108 [C] | 3.78 | 5:34 [G] | 79.5 | ||
B:319 [VAL] | 5:107 [G] | 3.4 | 5:35 [C] | 8.8 | ||
B:320 [GLY] | 5:107 [G] | 3.19 | 5:35 [C] | 54.6 | ||
B:320 [GLY] | 5:108 [C] | 3.34 | 5:34 [G] | 54.6 | ||
B:321 [TYR] | 5:107 [G] | 4.48 | 5:35 [C] | 88.7 | ||
B:321 [TYR] | 5:108 [C] | 3.62 | 5:34 [G] | 88.7 | ||
B:321 [TYR] | 5:109 [C] | 4.59 | 5:33 [G] | 88.7 | ||
B:322 [GLY] | 5:108 [C] | 3.28 | 5:34 [G] | 96.5 | ||
B:322 [GLY] | 5:109 [C] | 3.36 | 5:33 [G] | 96.5 | ||
B:323 [THR] | 5:108 [C] | 4.09 | 5:34 [G] | 3.9 | ||
B:323 [THR] | 5:109 [C] | 3.63 | 5:33 [G] | 3.9 | ||
B:325 [ARG] | 5:109 [C] | 3.05 | 5:33 [G] | 61.2 | ||
B:325 [ARG] | 5:110 [U] | 2.91 | 61.2 | |||
B:338 [PRO] | 5:13 [C] | 4.0 | 79.2 | |||
B:338 [PRO] | 5:14 [A] | 4.09 | 5:19 [A] | 79.2 | ||
B:339 [ARG] | 5:13 [C] | 4.28 | 39.9 | |||
B:339 [ARG] | 5:107 [G] | 4.04 | 5:35 [C] | 39.9 | ||
B:340 [ARG] | 5:12 [C] | 3.77 | 5:20 [G] | 86.7 | ||
B:340 [ARG] | 5:13 [C] | 2.87 | 86.7 | |||
B:340 [ARG] | 5:107 [G] | 4.37 | 5:35 [C] | 86.7 | ||
B:341 [ARG] | 5:13 [C] | 3.03 | base:SC | 95.8 | ||
B:341 [ARG] | 5:14 [A] | 3.11 | 5:19 [A] | 95.8 | ||
B:370 [SER] | 5:36 [U] | 3.2 | 5:102 [U] | sugar:SC | 81.0 | |
B:370 [SER] | 5:37 [G] | 3.53 | 5:101 [C] | 81.0 | ||
B:372 [ILE] | 5:36 [U] | 3.7 | 5:102 [U] | 55.4 | ||
B:372 [ILE] | 5:37 [G] | 3.36 | 5:101 [C] | 55.4 | ||
B:372 [ILE] | 5:107 [G] | 3.37 | 5:35 [C] | 55.4 | ||
B:373 [GLY] | 5:37 [G] | 3.65 | 5:101 [C] | 57.2 | ||
B:373 [GLY] | 5:38 [G] | 4.88 | 5:100 [C] | 57.2 | ||
B:374 [HIS] | 5:37 [G] | 4.09 | 5:101 [C] | 43.8 | ||
B:374 [HIS] | 5:38 [G] | 4.0 | 5:100 [C] | 43.8 | ||
B:376 [ARG] | 5:37 [G] | 4.55 | 5:101 [C] | 40.1 | ||
B:377 [PHE] | 5:37 [G] | 4.35 | 5:101 [C] | 39.4 | ||
B:380 [LYS] | 5:35 [C] | 3.34 | 5:107 [G] | sugar:SC | 44.1 | |
B:380 [LYS] | 5:36 [U] | 3.64 | 5:102 [U] | 44.1 | ||
B:383 [LYS] | 5:36 [U] | 3.26 | 5:102 [U] | 74.1 | ||
B:383 [LYS] | 5:37 [G] | 2.36 | 5:101 [C] | 74.1 | ||
B:386 [TRP] | 5:97 [G] | 3.3 | 45.3 | |||
B:387 [PHE] | 5:97 [G] | 3.35 | 9.6 | |||
B:388 [GLY] | 5:97 [G] | 3.65 | 46.5 | |||
B:389 [PRO] | 5:97 [G] | 4.44 | 38.9 | |||
B:389 [PRO] | 5:98 [A] | 4.96 | 5:40 [A] | 38.9 | ||
B:390 [LEU] | 5:97 [G] | 3.4 | 28.6 | |||
B:390 [LEU] | 5:98 [A] | 3.46 | 5:40 [A] | 28.6 | ||
B:391 [LYS] | 5:42 [G] | 4.25 | 60.6 | |||
B:391 [LYS] | 5:96 [U] | 4.35 | 5:43 [A] | 60.6 | ||
B:391 [LYS] | 5:98 [A] | 3.17 | 5:40 [A] | 60.6 | ||
B:391 [LYS] | 5:99 [A] | 3.06 | 5:39 [C] | 60.6 | ||
B:392 [LYS] | 5:34 [G] | 4.67 | 5:108 [C] | 17.1 | ||
B:392 [LYS] | 5:35 [C] | 2.57 | 5:107 [G] | 17.1 | ||
B:392 [LYS] | 5:98 [A] | 4.73 | 5:40 [A] | 17.1 | ||
B:393 [ASP] | 5:35 [C] | 4.58 | 5:107 [G] | 18.2 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group129 | 6AZ3_B_5 | B: Ribosomal protein ul3, Leishmania donovani (natural) 5: rRNA epsilon, Leishmania donovani (natural) | Alanine racemase-C | ✔ |
Interologs
Total number of interologs for this interface: 3
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_B_5 | 7O7Y_BB_B5 | 0.83 | 0.96 | 1.07 | 0.41 | Alanine racemase-C | compare | |
1YHQ_B_0 | 6AZ3_B_5 | 0.89 | 0.81 | 1.05 | 0.19 | Alanine racemase-C | compare | |
1VQ8_B_0 | 6AZ3_B_5 | 0.88 | 0.81 | 1.06 | 0.19 | Alanine racemase-C | compare |