RNAprotDB

All interfaces > All interologs > Interface groups > group129 > 6AZ3_B_5

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6AZ3_B
6AZ3_5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:21 [ARG] 5:15 [A] 3.4 5:106 [G] 98.2
B:21 [ARG] 5:16 [A] 4.8 98.2
B:21 [ARG] 5:17 [C] 4.26 98.2
B:21 [ARG] 5:18 [G] 2.77 base:SC, base:SC 98.2
B:21 [ARG] 5:19 [A] 3.15 5:14 [A] 98.2
B:25 [ILE] 5:13 [C] 3.5 42.7
B:25 [ILE] 5:21 [A] 3.42 5:11 [U] 42.7
B:25 [ILE] 5:22 [G] 4.88 5:10 [C] 42.7
B:116 [ARG] 5:23 [A] 3.44 5:9 [U] 80.2
B:116 [ARG] 5:24 [A] 3.35 80.2
B:117 [ARG] 5:22 [G] 2.89 5:10 [C] 38.0
B:118 [TYR] 5:5 [U] 4.17 5:129 [A] 52.7
B:119 [TYR] 5:3 [C] 4.94 5:131 [A] 56.8
B:119 [TYR] 5:4 [G] 3.11 5:130 [C] 56.8
B:119 [TYR] 5:5 [U] 3.85 5:129 [A] 56.8
B:120 [LYS] 5:5 [U] 2.97 5:129 [A] 85.1
B:120 [LYS] 5:6 [C] 3.23 5:128 [G] 85.1
B:120 [LYS] 5:23 [A] 4.68 5:9 [U] 85.1
B:120 [LYS] 5:24 [A] 3.3 base:BB 85.1
B:121 [ASN] 5:5 [U] 4.16 5:129 [A] 42.1
B:121 [ASN] 5:24 [A] 3.18 base/AA stacks 42.1
B:123 [LYS] 5:24 [A] 3.59 46.0
B:123 [LYS] 5:25 [C] 3.29 46.0
B:123 [LYS] 5:26 [A] 2.74 5:123 [U] 46.0
B:124 [GLN] 5:25 [C] 4.6 21.9
B:124 [GLN] 5:126 [G] 3.66 5:8 [C] 21.9
B:125 [SER] 5:4 [G] 3.3 5:130 [C] 67.1
B:126 [ALA] 5:3 [C] 4.0 5:131 [A] 79.1
B:126 [ALA] 5:4 [G] 3.2 5:130 [C] 79.1
B:127 [GLN] 5:4 [G] 4.03 5:130 [C] 62.4
B:128 [LEU] 5:3 [C] 4.75 5:131 [A] 50.7
B:174 [HIS] 5:27 [U] 4.3 58.4
B:174 [HIS] 5:28 [G] 4.24 5:122 [C] 58.4
B:174 [HIS] 5:109 [C] 3.88 5:33 [G] 58.4
B:174 [HIS] 5:110 [U] 2.9 58.4
B:175 [ARG] 5:12 [C] 4.31 5:20 [G] 60.7
B:175 [ARG] 5:13 [C] 4.43 60.7
B:175 [ARG] 5:106 [G] 4.09 5:15 [A] 60.7
B:175 [ARG] 5:107 [G] 2.87 5:35 [C] 60.7
B:175 [ARG] 5:108 [C] 2.94 5:34 [G] 60.7
B:176 [VAL] 5:13 [C] 3.46 46.0
B:177 [GLY] 5:13 [C] 4.11 47.4
B:177 [GLY] 5:22 [G] 2.98 5:10 [C] 47.4
B:177 [GLY] 5:23 [A] 3.37 5:9 [U] 47.4
B:178 [VAL] 5:13 [C] 4.43 80.3
B:178 [VAL] 5:22 [G] 3.29 5:10 [C] 80.3
B:178 [VAL] 5:23 [A] 4.23 5:9 [U] 80.3
B:179 [LYS] 5:22 [G] 3.71 5:10 [C] 97.9
B:179 [LYS] 5:23 [A] 3.12 5:9 [U] 97.9
B:179 [LYS] 5:24 [A] 2.74 97.9
B:179 [LYS] 5:26 [A] 3.74 5:123 [U] 97.9
B:180 [LYS] 5:22 [G] 4.36 5:10 [C] 71.6
B:180 [LYS] 5:23 [A] 3.07 5:9 [U] 71.6
B:182 [HIS] 5:22 [G] 4.14 5:10 [C] 74.7
B:226 [THR] 5:14 [A] 4.45 5:19 [A] 98.0
B:227 [LYS] 5:14 [A] 3.58 5:19 [A] 87.1
B:228 [GLY] 5:14 [A] 2.78 5:19 [A] 98.6
B:228 [GLY] 5:15 [A] 3.32 5:106 [G] 98.6
B:229 [HIS] 5:15 [A] 3.62 5:106 [G] 76.9
B:230 [GLY] 5:15 [A] 3.14 5:106 [G] 96.2
B:230 [GLY] 5:16 [A] 3.6 96.2
B:231 [THR] 5:15 [A] 4.67 5:106 [G] 47.2
B:231 [THR] 5:16 [A] 2.82 47.2
B:274 [GLN] 5:14 [A] 4.78 5:19 [A] 95.0
B:274 [GLN] 5:15 [A] 2.71 5:106 [G] 95.0
B:275 [HIS] 5:15 [A] 4.42 5:106 [G] 71.0
B:276 [GLY] 5:15 [A] 4.71 5:106 [G] 98.5
B:277 [TYR] 5:14 [A] 3.67 5:19 [A] 66.0
B:277 [TYR] 5:15 [A] 4.32 5:106 [G] 66.0
B:277 [TYR] 5:20 [G] 3.67 5:12 [C] 66.0
B:315 [MET] 5:36 [U] 3.54 5:102 [U] 46.7
B:315 [MET] 5:37 [G] 4.25 5:101 [C] 46.7
B:316 [GLY] 5:35 [C] 4.88 5:107 [G] 67.0
B:316 [GLY] 5:36 [U] 3.8 5:102 [U] 67.0
B:316 [GLY] 5:107 [G] 3.97 5:35 [C] 67.0
B:316 [GLY] 5:108 [C] 3.28 5:34 [G] 67.0
B:317 [GLY] 5:108 [C] 4.25 5:34 [G] 88.5
B:318 [PHE] 5:107 [G] 4.03 5:35 [C] 79.5
B:318 [PHE] 5:108 [C] 3.78 5:34 [G] 79.5
B:319 [VAL] 5:107 [G] 3.4 5:35 [C] 8.8
B:320 [GLY] 5:107 [G] 3.19 5:35 [C] 54.6
B:320 [GLY] 5:108 [C] 3.34 5:34 [G] 54.6
B:321 [TYR] 5:107 [G] 4.48 5:35 [C] 88.7
B:321 [TYR] 5:108 [C] 3.62 5:34 [G] 88.7
B:321 [TYR] 5:109 [C] 4.59 5:33 [G] 88.7
B:322 [GLY] 5:108 [C] 3.28 5:34 [G] 96.5
B:322 [GLY] 5:109 [C] 3.36 5:33 [G] 96.5
B:323 [THR] 5:108 [C] 4.09 5:34 [G] 3.9
B:323 [THR] 5:109 [C] 3.63 5:33 [G] 3.9
B:325 [ARG] 5:109 [C] 3.05 5:33 [G] 61.2
B:325 [ARG] 5:110 [U] 2.91 61.2
B:338 [PRO] 5:13 [C] 4.0 79.2
B:338 [PRO] 5:14 [A] 4.09 5:19 [A] 79.2
B:339 [ARG] 5:13 [C] 4.28 39.9
B:339 [ARG] 5:107 [G] 4.04 5:35 [C] 39.9
B:340 [ARG] 5:12 [C] 3.77 5:20 [G] 86.7
B:340 [ARG] 5:13 [C] 2.87 86.7
B:340 [ARG] 5:107 [G] 4.37 5:35 [C] 86.7
B:341 [ARG] 5:13 [C] 3.03 base:SC 95.8
B:341 [ARG] 5:14 [A] 3.11 5:19 [A] 95.8
B:370 [SER] 5:36 [U] 3.2 5:102 [U] sugar:SC 81.0
B:370 [SER] 5:37 [G] 3.53 5:101 [C] 81.0
B:372 [ILE] 5:36 [U] 3.7 5:102 [U] 55.4
B:372 [ILE] 5:37 [G] 3.36 5:101 [C] 55.4
B:372 [ILE] 5:107 [G] 3.37 5:35 [C] 55.4
B:373 [GLY] 5:37 [G] 3.65 5:101 [C] 57.2
B:373 [GLY] 5:38 [G] 4.88 5:100 [C] 57.2
B:374 [HIS] 5:37 [G] 4.09 5:101 [C] 43.8
B:374 [HIS] 5:38 [G] 4.0 5:100 [C] 43.8
B:376 [ARG] 5:37 [G] 4.55 5:101 [C] 40.1
B:377 [PHE] 5:37 [G] 4.35 5:101 [C] 39.4
B:380 [LYS] 5:35 [C] 3.34 5:107 [G] sugar:SC 44.1
B:380 [LYS] 5:36 [U] 3.64 5:102 [U] 44.1
B:383 [LYS] 5:36 [U] 3.26 5:102 [U] 74.1
B:383 [LYS] 5:37 [G] 2.36 5:101 [C] 74.1
B:386 [TRP] 5:97 [G] 3.3 45.3
B:387 [PHE] 5:97 [G] 3.35 9.6
B:388 [GLY] 5:97 [G] 3.65 46.5
B:389 [PRO] 5:97 [G] 4.44 38.9
B:389 [PRO] 5:98 [A] 4.96 5:40 [A] 38.9
B:390 [LEU] 5:97 [G] 3.4 28.6
B:390 [LEU] 5:98 [A] 3.46 5:40 [A] 28.6
B:391 [LYS] 5:42 [G] 4.25 60.6
B:391 [LYS] 5:96 [U] 4.35 5:43 [A] 60.6
B:391 [LYS] 5:98 [A] 3.17 5:40 [A] 60.6
B:391 [LYS] 5:99 [A] 3.06 5:39 [C] 60.6
B:392 [LYS] 5:34 [G] 4.67 5:108 [C] 17.1
B:392 [LYS] 5:35 [C] 2.57 5:107 [G] 17.1
B:392 [LYS] 5:98 [A] 4.73 5:40 [A] 17.1
B:393 [ASP] 5:35 [C] 4.58 5:107 [G] 18.2

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group129 6AZ3_B_5 B: Ribosomal protein ul3, Leishmania donovani (natural) 5: rRNA epsilon, Leishmania donovani (natural) Alanine racemase-C ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_B_5 7O7Y_BB_B5 0.83 0.96 1.07 0.41 Alanine racemase-C compare
1YHQ_B_0 6AZ3_B_5 0.89 0.81 1.05 0.19 Alanine racemase-C compare
1VQ8_B_0 6AZ3_B_5 0.88 0.81 1.06 0.19 Alanine racemase-C compare