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All interfaces > All interologs > Interface groups > group141 > 1A9N_B_Q

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1A9N_B
1A9N_Q
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:6 [ILE] Q:10 [C] 4.27 14.38
B:11 [THR] Q:11 [A] 4.35 85.06
B:13 [TYR] Q:9 [G] 3.48 base:SC 81.36
B:13 [TYR] Q:10 [C] 3.36 base/AA stacks 81.36
B:15 [ASN] Q:8 [U] 4.53 66.11
B:15 [ASN] Q:9 [G] 3.44 base:SC 66.11
B:16 [ASN] Q:8 [U] 2.71 base:SC 99.0
B:16 [ASN] Q:9 [G] 2.97 base:BB 99.0
B:17 [MET] Q:9 [G] 4.35 76.09
B:19 [ASP] Q:6 [A] 2.62 base:SC 55.3
B:19 [ASP] Q:7 [U] 2.74 base:SC 55.3
B:19 [ASP] Q:9 [G] 4.75 55.3
B:20 [LYS] Q:4 [G] 2.58 Q:18 [C] base:SC 52.49
B:20 [LYS] Q:5 [U] 2.59 Q:17 [U] base:SC 52.49
B:20 [LYS] Q:6 [A] 4.57 52.49
B:20 [LYS] Q:17 [U] 2.81 Q:5 [U] base:SC 52.49
B:20 [LYS] Q:18 [C] 4.19 Q:4 [G] 52.49
B:22 [LYS] Q:0 [C] 3.64 Q:22 [G] 63.66
B:22 [LYS] Q:1 [C] 3.07 Q:21 [G] 63.66
B:23 [LYS] Q:13 [U] 2.57 base:SC 20.43
B:23 [LYS] Q:15 [C] 3.1 20.43
B:23 [LYS] Q:16 [C] 3.27 20.43
B:24 [GLU] Q:15 [C] 4.93 44.34
B:27 [LYS] Q:13 [U] 3.12 52.94
B:43 [ILE] Q:13 [U] 3.53 79.37
B:44 [VAL] Q:11 [A] 3.8 25.4
B:44 [VAL] Q:12 [G] 3.39 25.4
B:44 [VAL] Q:13 [U] 3.34 25.4
B:45 [ALA] Q:13 [U] 2.96 base:BB, base:BB 43.79
B:46 [LEU] Q:11 [A] 3.14 15.52
B:46 [LEU] Q:12 [G] 3.98 15.52
B:46 [LEU] Q:13 [U] 3.23 15.52
B:47 [LYS] Q:16 [C] 2.84 sugar:BB 52.06
B:47 [LYS] Q:17 [U] 4.63 Q:5 [U] 52.06
B:48 [THR] Q:16 [C] 3.75 59.37
B:49 [MET] Q:6 [A] 4.3 41.38
B:49 [MET] Q:7 [U] 4.94 41.38
B:49 [MET] Q:9 [G] 4.56 41.38
B:49 [MET] Q:17 [U] 3.32 Q:5 [U] 41.38
B:50 [LYS] Q:9 [G] 3.05 sugar:BB 50.73
B:50 [LYS] Q:11 [A] 3.03 50.73
B:51 [MET] Q:9 [G] 4.79 63.78
B:51 [MET] Q:10 [C] 4.2 63.78
B:51 [MET] Q:11 [A] 3.37 63.78
B:52 [ARG] Q:6 [A] 2.92 base:SC 79.6
B:52 [ARG] Q:7 [U] 2.81 base:SC 79.6
B:52 [ARG] Q:9 [G] 3.23 79.6
B:52 [ARG] Q:16 [C] 3.77 79.6
B:52 [ARG] Q:17 [U] 2.97 Q:5 [U] 79.6
B:53 [GLY] Q:9 [G] 3.57 89.82
B:54 [GLN] Q:9 [G] 3.11 base/AA stacks 86.12
B:54 [GLN] Q:10 [C] 3.65 86.12
B:56 [PHE] Q:10 [C] 3.28 87.96
B:56 [PHE] Q:11 [A] 3.3 base/AA stacks 87.96
B:58 [ILE] Q:11 [A] 4.82 61.19
B:80 [LYS] Q:7 [U] 4.61 76.86
B:80 [LYS] Q:8 [U] 2.58 base:SC 76.86
B:83 [ARG] Q:8 [U] 2.79 base:SC 43.99
B:85 [GLN] Q:10 [C] 2.61 base:SC 41.8
B:86 [TYR] Q:10 [C] 3.47 base:BB 40.23
B:87 [ALA] Q:10 [C] 3.56 90.03
B:87 [ALA] Q:11 [A] 4.73 90.03
B:88 [LYS] Q:10 [C] 3.12 base:BB 65.75
B:89 [THR] Q:10 [C] 4.57 36.98
B:89 [THR] Q:11 [A] 2.94 base:SC 36.98
B:89 [THR] Q:12 [G] 4.63 36.98
B:90 [ASP] Q:11 [A] 3.4 29.6
B:90 [ASP] Q:12 [G] 3.53 29.6
B:91 [SER] Q:11 [A] 2.69 base:SC 85.42
B:91 [SER] Q:12 [G] 3.2 85.42
B:92 [ASP] Q:11 [A] 4.93 61.8
B:92 [ASP] Q:12 [G] 2.88 base:BB base/AA stacks 61.8
B:93 [ILE] Q:12 [G] 4.83 41.49

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
UniProt ID
ECOD label(s)
RFAM label(s)
Is ribosome? RCSB PDB link
group141 1A9N_B_Q B: Spliceosomal u2b'', Homo sapiens (genetically engineered) Q: Homo sapiens (genetically engineered) P08579 RNA-binding domain, RBD

Interologs

Total number of interologs for this interface: 20

Interface 1 Interface 2 Percentage conservation
Interface TM-score
Interface RMSD
Percentage identity
Common ECOD label(s)
Common RFAM label(s)
Explore both interfaces
1A9N_B_Q 6F4G_B_C 0.94 0.92 0.25 0.79 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_R_G 0.79 0.68 2.58 0.17 compare
1A9N_B_Q 6SQN_A_X 0.92 0.87 0.86 0.6 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_4_G 0.43 0.58 1.31 0.17 RNA-binding domain, RBD compare
1A9N_B_Q 6DCL_A_D 0.32 0.6 2.71 0.2 RNA-binding domain, RBD compare
1A9N_B_Q 5WWE_A_B 0.72 0.6 2.34 0.2 RNA-binding domain, RBD compare
1A9N_B_Q 1SJ3_P_R 0.83 0.85 0.49 0.55 RNA-binding domain, RBD compare
1A9N_B_Q 1M5O_C_B 0.86 0.83 0.56 0.43 RNA-binding domain, RBD compare
1A9N_B_Q 1G2E_A_B 0.54 0.62 3.02 0.16 RNA-binding domain, RBD compare
1A9N_B_Q 6F4H_A_B 0.81 0.85 0.49 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 4PR6_A_B 0.81 0.85 0.49 0.54 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_p_H 0.32 0.68 0.46 0.29 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_X_G 0.31 0.63 3.58 0.12 RNA-binding domain, RBD compare
1A9N_B_Q 2NZ4_A_P 0.79 0.83 0.54 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 1URN_A_P 0.78 0.85 0.84 0.58 RNA-binding domain, RBD compare
1A9N_B_Q 1DRZ_A_B 0.81 0.85 0.47 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 5DDP_D_A 0.81 0.82 0.42 0.46 RNA-binding domain, RBD compare
1A9N_B_Q 4ED5_A_D 0.54 0.62 2.45 0.1 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 3MXH_P_R 0.79 0.78 1.0 0.46 RNA-binding domain, RBD compare