Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
1A9N_B
|
1A9N_Q
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
B:6 [ILE] | Q:10 [C] | 4.27 | 14.38 | |||
B:11 [THR] | Q:11 [A] | 4.35 | 85.06 | |||
B:13 [TYR] | Q:9 [G] | 3.48 | base:SC | 81.36 | ||
B:13 [TYR] | Q:10 [C] | 3.36 | base/AA stacks | 81.36 | ||
B:15 [ASN] | Q:8 [U] | 4.53 | 66.11 | |||
B:15 [ASN] | Q:9 [G] | 3.44 | base:SC | 66.11 | ||
B:16 [ASN] | Q:8 [U] | 2.71 | base:SC | 99.0 | ||
B:16 [ASN] | Q:9 [G] | 2.97 | base:BB | 99.0 | ||
B:17 [MET] | Q:9 [G] | 4.35 | 76.09 | |||
B:19 [ASP] | Q:6 [A] | 2.62 | base:SC | 55.3 | ||
B:19 [ASP] | Q:7 [U] | 2.74 | base:SC | 55.3 | ||
B:19 [ASP] | Q:9 [G] | 4.75 | 55.3 | |||
B:20 [LYS] | Q:4 [G] | 2.58 | Q:18 [C] | base:SC | 52.49 | |
B:20 [LYS] | Q:5 [U] | 2.59 | Q:17 [U] | base:SC | 52.49 | |
B:20 [LYS] | Q:6 [A] | 4.57 | 52.49 | |||
B:20 [LYS] | Q:17 [U] | 2.81 | Q:5 [U] | base:SC | 52.49 | |
B:20 [LYS] | Q:18 [C] | 4.19 | Q:4 [G] | 52.49 | ||
B:22 [LYS] | Q:0 [C] | 3.64 | Q:22 [G] | 63.66 | ||
B:22 [LYS] | Q:1 [C] | 3.07 | Q:21 [G] | 63.66 | ||
B:23 [LYS] | Q:13 [U] | 2.57 | base:SC | 20.43 | ||
B:23 [LYS] | Q:15 [C] | 3.1 | 20.43 | |||
B:23 [LYS] | Q:16 [C] | 3.27 | 20.43 | |||
B:24 [GLU] | Q:15 [C] | 4.93 | 44.34 | |||
B:27 [LYS] | Q:13 [U] | 3.12 | 52.94 | |||
B:43 [ILE] | Q:13 [U] | 3.53 | 79.37 | |||
B:44 [VAL] | Q:11 [A] | 3.8 | 25.4 | |||
B:44 [VAL] | Q:12 [G] | 3.39 | 25.4 | |||
B:44 [VAL] | Q:13 [U] | 3.34 | 25.4 | |||
B:45 [ALA] | Q:13 [U] | 2.96 | base:BB, base:BB | 43.79 | ||
B:46 [LEU] | Q:11 [A] | 3.14 | 15.52 | |||
B:46 [LEU] | Q:12 [G] | 3.98 | 15.52 | |||
B:46 [LEU] | Q:13 [U] | 3.23 | 15.52 | |||
B:47 [LYS] | Q:16 [C] | 2.84 | sugar:BB | 52.06 | ||
B:47 [LYS] | Q:17 [U] | 4.63 | Q:5 [U] | 52.06 | ||
B:48 [THR] | Q:16 [C] | 3.75 | 59.37 | |||
B:49 [MET] | Q:6 [A] | 4.3 | 41.38 | |||
B:49 [MET] | Q:7 [U] | 4.94 | 41.38 | |||
B:49 [MET] | Q:9 [G] | 4.56 | 41.38 | |||
B:49 [MET] | Q:17 [U] | 3.32 | Q:5 [U] | 41.38 | ||
B:50 [LYS] | Q:9 [G] | 3.05 | sugar:BB | 50.73 | ||
B:50 [LYS] | Q:11 [A] | 3.03 | 50.73 | |||
B:51 [MET] | Q:9 [G] | 4.79 | 63.78 | |||
B:51 [MET] | Q:10 [C] | 4.2 | 63.78 | |||
B:51 [MET] | Q:11 [A] | 3.37 | 63.78 | |||
B:52 [ARG] | Q:6 [A] | 2.92 | base:SC | 79.6 | ||
B:52 [ARG] | Q:7 [U] | 2.81 | base:SC | 79.6 | ||
B:52 [ARG] | Q:9 [G] | 3.23 | 79.6 | |||
B:52 [ARG] | Q:16 [C] | 3.77 | 79.6 | |||
B:52 [ARG] | Q:17 [U] | 2.97 | Q:5 [U] | 79.6 | ||
B:53 [GLY] | Q:9 [G] | 3.57 | 89.82 | |||
B:54 [GLN] | Q:9 [G] | 3.11 | base/AA stacks | 86.12 | ||
B:54 [GLN] | Q:10 [C] | 3.65 | 86.12 | |||
B:56 [PHE] | Q:10 [C] | 3.28 | 87.96 | |||
B:56 [PHE] | Q:11 [A] | 3.3 | base/AA stacks | 87.96 | ||
B:58 [ILE] | Q:11 [A] | 4.82 | 61.19 | |||
B:80 [LYS] | Q:7 [U] | 4.61 | 76.86 | |||
B:80 [LYS] | Q:8 [U] | 2.58 | base:SC | 76.86 | ||
B:83 [ARG] | Q:8 [U] | 2.79 | base:SC | 43.99 | ||
B:85 [GLN] | Q:10 [C] | 2.61 | base:SC | 41.8 | ||
B:86 [TYR] | Q:10 [C] | 3.47 | base:BB | 40.23 | ||
B:87 [ALA] | Q:10 [C] | 3.56 | 90.03 | |||
B:87 [ALA] | Q:11 [A] | 4.73 | 90.03 | |||
B:88 [LYS] | Q:10 [C] | 3.12 | base:BB | 65.75 | ||
B:89 [THR] | Q:10 [C] | 4.57 | 36.98 | |||
B:89 [THR] | Q:11 [A] | 2.94 | base:SC | 36.98 | ||
B:89 [THR] | Q:12 [G] | 4.63 | 36.98 | |||
B:90 [ASP] | Q:11 [A] | 3.4 | 29.6 | |||
B:90 [ASP] | Q:12 [G] | 3.53 | 29.6 | |||
B:91 [SER] | Q:11 [A] | 2.69 | base:SC | 85.42 | ||
B:91 [SER] | Q:12 [G] | 3.2 | 85.42 | |||
B:92 [ASP] | Q:11 [A] | 4.93 | 61.8 | |||
B:92 [ASP] | Q:12 [G] | 2.88 | base:BB | base/AA stacks | 61.8 | |
B:93 [ILE] | Q:12 [G] | 4.83 | 41.49 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group141 | 1A9N_B_Q | B: Spliceosomal u2b'', Homo sapiens (genetically engineered) Q: Homo sapiens (genetically engineered) | P08579 | RNA-binding domain, RBD | ✘ |
Interologs
Total number of interologs for this interface: 20