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All interfaces > All interologs > Interface groups > group141 > 1A9N_B_Q vs 4PKD_B_V

Interface analysis


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Common contacts -

1A9N_B
1A9N_Q
4PKD_B
4PKD_V
Conserved?
B:13 [TYR] Q:9 [G] B:13 [TYR] V:68 [G] ✔
B:13 [TYR] Q:10 [C] B:13 [TYR] V:69 [C] ✔
B:91 [SER] Q:11 [A] B:91 [SER] V:70 [A] ✔
B:91 [SER] Q:12 [G] B:91 [SER] V:71 [C] ✔
B:90 [ASP] Q:11 [A] B:90 [ASP] V:70 [A] ✔
B:90 [ASP] Q:12 [G] B:90 [ASP] V:71 [C] ✔
B:15 [ASN] Q:8 [U] B:15 [ASN] V:67 [U] ✔
B:15 [ASN] Q:9 [G] B:15 [ASN] V:68 [G] ✔
B:87 [ALA] Q:10 [C] B:87 [ALA] V:69 [C] ✔
B:87 [ALA] Q:11 [A] B:87 [ALA] V:70 [A] ✔
B:11 [THR] Q:11 [A] B:11 [THR] V:70 [A] ✔
B:88 [LYS] Q:10 [C] B:88 [LYS] V:69 [C] ✔
B:22 [LYS] Q:0 [C] B:22 [LYS] V:59 [GTP] ✔
B:22 [LYS] Q:1 [C] B:22 [LYS] V:60 [G] ✔
B:53 [GLY] Q:9 [G] B:53 [GLY] V:68 [G] ✔
B:44 [VAL] Q:11 [A] B:44 [LEU] V:70 [A] ✔
B:44 [VAL] Q:12 [G] B:44 [LEU] V:71 [C] ✔
B:17 [MET] Q:9 [G] B:17 [LEU] V:68 [G] ✔
B:54 [GLN] Q:9 [G] B:54 [GLN] V:68 [G] ✔
B:54 [GLN] Q:10 [C] B:54 [GLN] V:69 [C] ✔
B:51 [MET] Q:9 [G] B:51 [MET] V:68 [G] ✔
B:51 [MET] Q:10 [C] B:51 [MET] V:69 [C] ✔
B:51 [MET] Q:11 [A] B:51 [MET] V:70 [A] ✔
B:19 [ASP] Q:6 [A] B:19 [GLU] V:65 [A] ✔
B:19 [ASP] Q:7 [U] B:19 [GLU] V:66 [U] ✔
B:19 [ASP] Q:9 [G] B:19 [GLU] V:68 [G] ✔
B:86 [TYR] Q:10 [C] B:86 [TYR] V:69 [C] ✔
B:85 [GLN] Q:10 [C] B:85 [GLN] V:69 [C] ✔
B:80 [LYS] Q:8 [U] B:80 [LYS] V:67 [U] ✔
B:16 [ASN] Q:8 [U] B:16 [ASN] V:67 [U] ✔
B:16 [ASN] Q:9 [G] B:16 [ASN] V:68 [G] ✔
B:49 [MET] Q:6 [A] B:49 [LEU] V:65 [A] ✔
B:49 [MET] Q:7 [U] B:49 [LEU] V:66 [U] ✔
B:49 [MET] Q:9 [G] B:49 [LEU] V:68 [G] ✔
B:56 [PHE] Q:10 [C] B:56 [PHE] V:69 [C] ✔
B:56 [PHE] Q:11 [A] B:56 [PHE] V:70 [A] ✔
B:92 [ASP] Q:12 [G] B:92 [ASP] V:71 [C] ✔
B:52 [ARG] Q:6 [A] B:52 [ARG] V:65 [A] ✔
B:52 [ARG] Q:7 [U] B:52 [ARG] V:66 [U] ✔
B:52 [ARG] Q:9 [G] B:52 [ARG] V:68 [G] ✔
B:89 [THR] Q:10 [C] B:89 [THR] V:69 [C] ✔
B:89 [THR] Q:11 [A] B:89 [THR] V:70 [A] ✔
B:89 [THR] Q:12 [G] B:89 [THR] V:71 [C] ✔
B:50 [LYS] Q:9 [G] B:50 [LYS] V:68 [G] ✔
B:50 [LYS] Q:11 [A] B:50 [LYS] V:70 [A] ✔
B:23 [LYS] Q:13 [U] B:23 [LYS] V:72 [U] ❌ 4PKD_B_V
B:23 [LYS] Q:15 [C] B:23 [LYS] V:74 [C] ❌ 4PKD_B_V
B:44 [VAL] Q:13 [U] B:44 [LEU] V:72 [U] ❌ 4PKD_B_V
B:46 [LEU] Q:11 [A] B:46 [SER] V:70 [A] ❌ 4PKD_B_V
B:46 [LEU] Q:12 [G] B:46 [SER] V:71 [C] ❌ 4PKD_B_V
B:46 [LEU] Q:13 [U] B:46 [SER] V:72 [U] ❌ 4PKD_B_V
B:80 [LYS] Q:7 [U] B:80 [LYS] V:66 [U] ❌ 4PKD_B_V
B:24 [GLU] Q:15 [C] B:24 [ASP] V:74 [C] ❌ 4PKD_B_V
B:92 [ASP] Q:11 [A] B:92 [ASP] V:70 [A] ❌ 4PKD_B_V
B:19 [ASP] Q:8 [U] B:19 [GLU] V:67 [U] ❌ 1A9N_B_Q
B:23 [LYS] Q:0 [C] B:23 [LYS] V:59 [GTP] ❌ 1A9N_B_Q
B:24 [GLU] Q:0 [C] B:24 [ASP] V:59 [GTP] ❌ 1A9N_B_Q
B:46 [LEU] Q:15 [C] B:46 [SER] V:74 [C] ❌ 1A9N_B_Q
B:47 [LYS] Q:0 [C] B:47 [ARG] V:59 [GTP] ❌ 1A9N_B_Q
B:47 [LYS] Q:15 [C] B:47 [ARG] V:74 [C] ❌ 1A9N_B_Q
B:48 [THR] Q:15 [C] B:48 [SER] V:74 [C] ❌ 1A9N_B_Q
B:50 [LYS] Q:12 [G] B:50 [LYS] V:71 [C] ❌ 1A9N_B_Q
B:92 [ASP] Q:13 [U] B:92 [ASP] V:72 [U] ❌ 1A9N_B_Q
B:20 [LYS] Q:5 [U] B:20 [LYS] V:64 [C] ❌ 4PKD_B:20, 4PKD_V:64 no longer at interface
B:20 [LYS] Q:18 [C] B:20 [LYS] V:77 [A] ❌ 4PKD_B:20, 4PKD_V:77 no longer at interface
B:46 [LEU] Q:14 [A] B:46 [SER] V:73 [C] ❌ 1A9N_Q:14 no longer at interface
B:27 [LYS] Q:13 [U] B:27 [LYS] V:72 [U] ❌ 4PKD_B:27 no longer at interface
B:43 [ILE] Q:13 [U] B:43 [ILE] V:72 [U] ❌ 4PKD_B:43 no longer at interface
B:6 [ILE] Q:10 [C] B:6 [THR] V:69 [C] ❌ 4PKD_B:6 no longer at interface
B:58 [ILE] Q:11 [A] B:58 [ILE] V:70 [A] ❌ 4PKD_B:58 no longer at interface
B:83 [ARG] Q:8 [U] B:83 [ARG] V:67 [U] ❌ 4PKD_B:83 no longer at interface
B:45 [ALA] Q:13 [U] B:45 [VAL] V:72 [U] ❌ 4PKD_B:45 no longer at interface
B:20 [LYS] Q:6 [A] B:20 [LYS] V:65 [A] ❌ 4PKD_B:20 no longer at interface
B:93 [ILE] Q:12 [G] B:93 [ILE] V:71 [C] ❌ 4PKD_B:93 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.85 0.6 0.50 0.97 0.37 0.78 0.69 0.75 0.80 0.46 0.38


Other pairs involving 1A9N_B_Q or 4PKD_B_V

Total number of entries: 31

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 4PKD_B_V 0.93 0.66 0.31 0.71 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
3MXH_P_R 4PKD_B_V 0.84 0.6 0.68 0.69 RNA-binding domain, RBD compare
1A9N_B_Q 6F4G_B_C 0.94 0.92 0.25 0.79 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_R_G 0.79 0.68 2.58 0.17 compare
1A9N_B_Q 6SQN_A_X 0.92 0.87 0.86 0.6 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_4_G 0.43 0.58 1.31 0.17 RNA-binding domain, RBD compare
1A9N_B_Q 6DCL_A_D 0.32 0.6 2.71 0.2 RNA-binding domain, RBD compare
1A9N_B_Q 5WWE_A_B 0.72 0.6 2.34 0.2 RNA-binding domain, RBD compare
1A9N_B_Q 1SJ3_P_R 0.83 0.85 0.49 0.55 RNA-binding domain, RBD compare
1A9N_B_Q 1M5O_C_B 0.86 0.83 0.56 0.43 RNA-binding domain, RBD compare
1A9N_B_Q 1G2E_A_B 0.54 0.62 3.02 0.16 RNA-binding domain, RBD compare
1A9N_B_Q 6F4H_A_B 0.81 0.85 0.49 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 4PR6_A_B 0.81 0.85 0.49 0.54 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_p_H 0.32 0.68 0.46 0.29 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_X_G 0.31 0.63 3.58 0.12 RNA-binding domain, RBD compare
1A9N_B_Q 2NZ4_A_P 0.79 0.83 0.54 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 1URN_A_P 0.78 0.85 0.84 0.58 RNA-binding domain, RBD compare
1A9N_B_Q 1DRZ_A_B 0.81 0.85 0.47 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 5DDP_D_A 0.81 0.82 0.42 0.46 RNA-binding domain, RBD compare
1A9N_B_Q 4ED5_A_D 0.54 0.62 2.45 0.1 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 3MXH_P_R 0.79 0.78 1.0 0.46 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
4PKD_B_V 4PR6_A_B 0.94 0.66 0.3 0.69 RNA-binding domain, RBD compare
4PKD_B_V 6F4H_A_B 0.88 0.94 0.45 0.65 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
4PKD_B_V 6SQN_A_X 0.96 0.94 0.34 0.8 RNA-binding domain, RBD compare
4PKD_B_V 6F4G_B_C 0.81 0.81 0.46 0.5 RNA-binding domain, RBD compare
2NZ4_A_P 4PKD_B_V 0.94 0.52 0.55 0.69 RNA-binding domain, RBD compare
1SJ3_P_R 4PKD_B_V 0.95 0.66 0.28 0.82 RNA-binding domain, RBD compare