RNAprotDB

All interfaces > All interologs > Interface groups > group141 > 1A9N_B_Q vs 6F4H_A_B

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1A9N_B
1A9N_Q
6F4H_A
6F4H_B
Conserved?
B:13 [TYR] Q:9 [G] A:10 [TYR] B:10 [G] ✔
B:13 [TYR] Q:10 [C] A:10 [TYR] B:11 [C] ✔
B:91 [SER] Q:11 [A] A:88 [SER] B:12 [A] ✔
B:91 [SER] Q:12 [G] A:88 [SER] B:13 [C] ✔
B:90 [ASP] Q:11 [A] A:87 [ASP] B:12 [A] ✔
B:90 [ASP] Q:12 [G] A:87 [ASP] B:13 [C] ✔
B:15 [ASN] Q:8 [U] A:12 [ASN] B:9 [U] ✔
B:15 [ASN] Q:9 [G] A:12 [ASN] B:10 [G] ✔
B:87 [ALA] Q:10 [C] A:84 [SER] B:11 [C] ✔
B:87 [ALA] Q:11 [A] A:84 [SER] B:12 [A] ✔
B:11 [THR] Q:11 [A] A:8 [THR] B:12 [A] ✔
B:6 [ILE] Q:10 [C] A:3 [MET] B:11 [C] ✔
B:88 [LYS] Q:10 [C] A:85 [LYS] B:11 [C] ✔
B:22 [LYS] Q:0 [C] A:19 [LYS] B:2 [G] ✔
B:53 [GLY] Q:9 [G] A:50 [GLY] B:10 [G] ✔
B:44 [VAL] Q:11 [A] A:41 [VAL] B:12 [A] ✔
B:17 [MET] Q:9 [G] A:14 [LEU] B:10 [G] ✔
B:58 [ILE] Q:11 [A] A:55 [ILE] B:12 [A] ✔
B:83 [ARG] Q:8 [U] A:80 [GLN] B:9 [U] ✔
B:54 [GLN] Q:9 [G] A:51 [GLN] B:10 [G] ✔
B:54 [GLN] Q:10 [C] A:51 [GLN] B:11 [C] ✔
B:46 [LEU] Q:11 [A] A:43 [LEU] B:12 [A] ✔
B:51 [MET] Q:9 [G] A:48 [MET] B:10 [G] ✔
B:51 [MET] Q:10 [C] A:48 [MET] B:11 [C] ✔
B:51 [MET] Q:11 [A] A:48 [MET] B:12 [A] ✔
B:19 [ASP] Q:6 [A] A:16 [GLU] B:7 [A] ✔
B:19 [ASP] Q:7 [U] A:16 [GLU] B:8 [U] ✔
B:19 [ASP] Q:9 [G] A:16 [GLU] B:10 [G] ✔
B:86 [TYR] Q:10 [C] A:83 [TYR] B:11 [C] ✔
B:85 [GLN] Q:10 [C] A:82 [ALA] B:11 [C] ✔
B:80 [LYS] Q:8 [U] A:77 [LYS] B:9 [U] ✔
B:16 [ASN] Q:8 [U] A:13 [ASN] B:9 [U] ✔
B:16 [ASN] Q:9 [G] A:13 [ASN] B:10 [G] ✔
B:49 [MET] Q:6 [A] A:46 [LEU] B:7 [A] ✔
B:49 [MET] Q:7 [U] A:46 [LEU] B:8 [U] ✔
B:49 [MET] Q:9 [G] A:46 [LEU] B:10 [G] ✔
B:56 [PHE] Q:10 [C] A:53 [PHE] B:11 [C] ✔
B:56 [PHE] Q:11 [A] A:53 [PHE] B:12 [A] ✔
B:92 [ASP] Q:11 [A] A:89 [ASP] B:12 [A] ✔
B:92 [ASP] Q:12 [G] A:89 [ASP] B:13 [C] ✔
B:52 [ARG] Q:6 [A] A:49 [ARG] B:7 [A] ✔
B:52 [ARG] Q:7 [U] A:49 [ARG] B:8 [U] ✔
B:52 [ARG] Q:9 [G] A:49 [ARG] B:10 [G] ✔
B:89 [THR] Q:10 [C] A:86 [SER] B:11 [C] ✔
B:89 [THR] Q:11 [A] A:86 [SER] B:12 [A] ✔
B:89 [THR] Q:12 [G] A:86 [SER] B:13 [C] ✔
B:93 [ILE] Q:12 [G] A:90 [ILE] B:13 [C] ✔
B:50 [LYS] Q:9 [G] A:47 [LYS] B:10 [G] ✔
B:50 [LYS] Q:11 [A] A:47 [LYS] B:12 [A] ✔
B:44 [VAL] Q:12 [G] A:41 [VAL] B:13 [C] ❌ 6F4H_A_B
B:44 [VAL] Q:13 [U] A:41 [VAL] B:14 [C] ❌ 6F4H_A_B
B:46 [LEU] Q:12 [G] A:43 [LEU] B:13 [C] ❌ 6F4H_A_B
B:46 [LEU] Q:13 [U] A:43 [LEU] B:14 [C] ❌ 6F4H_A_B
B:80 [LYS] Q:7 [U] A:77 [LYS] B:8 [U] ❌ 6F4H_A_B
B:50 [LYS] Q:10 [C] A:47 [LYS] B:11 [C] ❌ 1A9N_B_Q
B:92 [ASP] Q:13 [U] A:89 [ASP] B:14 [C] ❌ 1A9N_B_Q
B:22 [LYS] Q:1 [C] A:19 [LYS] B:3 [C] ❌ 6F4H_B:3 no longer at interface
B:20 [LYS] Q:5 [U] A:17 [LYS] B:6 [C] ❌ 6F4H_A:17, 6F4H_B:6 no longer at interface
B:20 [LYS] Q:18 [C] A:17 [LYS] B:19 [G] ❌ 6F4H_A:17, 6F4H_B:19 no longer at interface
B:46 [LEU] Q:14 [A] A:43 [LEU] B:15 [U] ❌ 1A9N_Q:14 no longer at interface
B:23 [LYS] Q:13 [U] A:20 [LYS] B:14 [C] ❌ 6F4H_A:20 no longer at interface
B:27 [LYS] Q:13 [U] A:24 [LYS] B:14 [C] ❌ 6F4H_A:24 no longer at interface
B:43 [ILE] Q:13 [U] A:40 [ILE] B:14 [C] ❌ 6F4H_A:40 no longer at interface
B:45 [ALA] Q:13 [U] A:42 [ALA] B:14 [C] ❌ 6F4H_A:42 no longer at interface
B:20 [LYS] Q:6 [A] A:17 [LYS] B:7 [A] ❌ 6F4H_A:17 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.85 0.49 0.50 0.96 0.21 1.0 0.75 0.81 0.73 0.54 0.56


Other pairs involving 1A9N_B_Q or 6F4H_A_B

Total number of entries: 39

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 6F4H_A_B 0.94 0.95 0.38 0.68 RNA-binding domain, RBD compare
6F4G_B_C 6F4H_A_B 0.81 0.87 0.36 0.5 RNA-binding domain, RBD compare
4ED5_A_D 6F4H_A_B 0.56 0.65 2.49 0.1 RNA-binding domain, RBD compare
1G2E_A_B 6F4H_A_B 0.57 0.64 3.02 0.1 RNA-binding domain, RBD compare
1URN_A_P 6F4H_A_B 0.95 0.94 0.32 0.72 RNA-binding domain, RBD compare
4PR6_A_B 6F4H_A_B 0.94 0.95 0.38 0.68 RNA-binding domain, RBD compare
3MXH_P_R 6F4H_A_B 0.95 0.91 0.91 0.59 RNA-binding domain, RBD compare
1A9N_B_Q 6F4G_B_C 0.94 0.92 0.25 0.79 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_R_G 0.79 0.68 2.58 0.17 compare
1A9N_B_Q 6SQN_A_X 0.92 0.87 0.86 0.6 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_4_G 0.43 0.58 1.31 0.17 RNA-binding domain, RBD compare
1A9N_B_Q 6DCL_A_D 0.32 0.6 2.71 0.2 RNA-binding domain, RBD compare
1A9N_B_Q 5WWE_A_B 0.72 0.6 2.34 0.2 RNA-binding domain, RBD compare
1A9N_B_Q 1SJ3_P_R 0.83 0.85 0.49 0.55 RNA-binding domain, RBD compare
1A9N_B_Q 1M5O_C_B 0.86 0.83 0.56 0.43 RNA-binding domain, RBD compare
1A9N_B_Q 1G2E_A_B 0.54 0.62 3.02 0.16 RNA-binding domain, RBD compare
1A9N_B_Q 6F4H_A_B 0.81 0.85 0.49 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 4PR6_A_B 0.81 0.85 0.49 0.54 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_p_H 0.32 0.68 0.46 0.29 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_X_G 0.31 0.63 3.58 0.12 RNA-binding domain, RBD compare
1A9N_B_Q 2NZ4_A_P 0.79 0.83 0.54 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 1URN_A_P 0.78 0.85 0.84 0.58 RNA-binding domain, RBD compare
1A9N_B_Q 1DRZ_A_B 0.81 0.85 0.47 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 5DDP_D_A 0.81 0.82 0.42 0.46 RNA-binding domain, RBD compare
1A9N_B_Q 4ED5_A_D 0.54 0.62 2.45 0.1 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 3MXH_P_R 0.79 0.78 1.0 0.46 RNA-binding domain, RBD compare
5TF6_A_B 6F4H_A_B 0.57 0.64 3.83 0.0 RNA-binding domain, RBD compare
1M5O_C_B 6F4H_A_B 0.95 0.95 0.48 0.7 RNA-binding domain, RBD compare
6DCL_A_D 6F4H_A_B 0.33 0.63 1.94 0.17 RNA-binding domain, RBD compare
4N0T_A_B 6F4H_A_B 0.56 0.64 3.75 0.0 RNA-binding domain, RBD compare
4PKD_B_V 6F4H_A_B 0.88 0.94 0.45 0.65 RNA-binding domain, RBD compare
2NZ4_A_P 6F4H_A_B 0.92 0.95 0.41 0.7 RNA-binding domain, RBD compare
1SJ3_P_R 6F4H_A_B 0.97 0.96 0.38 0.71 RNA-binding domain, RBD compare
5DDP_D_A 6F4H_A_B 0.92 0.96 0.33 0.68 RNA-binding domain, RBD compare
6F4H_A_B 7DCO_4_G 0.35 0.61 1.28 0.17 RNA-binding domain, RBD compare
6F4H_A_B 6SQN_A_X 0.93 0.92 0.38 0.74 RNA-binding domain, RBD compare
6F4H_A_B 7DCO_R_G 0.77 0.7 2.58 0.17 compare
6F4H_A_B 7DCO_X_G 0.43 0.65 2.51 0.12 RNA-binding domain, RBD compare