Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 1M5O_C
|
1M5O_B
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| C:6 [THR] | B:40 [C] | 4.21 | 37.44 | |||
| C:11 [THR] | B:41 [A] | 4.69 | 86.61 | |||
| C:13 [TYR] | B:39 [G] | 3.22 | 78.56 | |||
| C:13 [TYR] | B:40 [C] | 3.36 | base/AA stacks | 78.56 | ||
| C:15 [ASN] | B:38 [U] | 4.1 | 56.02 | |||
| C:15 [ASN] | B:39 [G] | 3.46 | 56.02 | |||
| C:16 [ASN] | B:38 [U] | 2.75 | base:SC | 96.59 | ||
| C:16 [ASN] | B:39 [G] | 2.98 | base:BB | 96.59 | ||
| C:17 [LEU] | B:39 [G] | 4.26 | 83.08 | |||
| C:19 [GLU] | B:36 [A] | 4.06 | 57.36 | |||
| C:19 [GLU] | B:37 [U] | 2.76 | base:SC | 57.36 | ||
| C:19 [GLU] | B:38 [U] | 4.78 | 57.36 | |||
| C:19 [GLU] | B:39 [G] | 3.05 | base:SC | 57.36 | ||
| C:20 [LYS] | B:34 [C] | 4.84 | B:47 [G] | 50.46 | ||
| C:22 [LYS] | B:31 [A] | 4.46 | B:50 [U] | 41.59 | ||
| C:22 [LYS] | B:32 [A] | 3.82 | B:49 [U] | 41.59 | ||
| C:44 [LEU] | B:41 [A] | 3.93 | 2.01 | |||
| C:44 [LEU] | B:42 [C] | 4.09 | 2.01 | |||
| C:46 [SER] | B:44 [C] | 4.92 | 10.76 | |||
| C:46 [SER] | B:45 [C] | 2.76 | 10.76 | |||
| C:47 [ARG] | B:45 [C] | 4.72 | 47.25 | |||
| C:47 [ARG] | B:46 [G] | 4.93 | B:35 [C] | 47.25 | ||
| C:48 [SER] | B:45 [C] | 3.78 | 64.4 | |||
| C:48 [SER] | B:46 [G] | 3.46 | B:35 [C] | 64.4 | ||
| C:49 [LEU] | B:36 [A] | 3.7 | 41.03 | |||
| C:49 [LEU] | B:37 [U] | 4.22 | 41.03 | |||
| C:49 [LEU] | B:39 [G] | 4.9 | 41.03 | |||
| C:49 [LEU] | B:45 [C] | 4.88 | 41.03 | |||
| C:49 [LEU] | B:46 [G] | 2.94 | B:35 [C] | 41.03 | ||
| C:50 [LYS] | B:39 [G] | 2.67 | sugar:BB | 57.38 | ||
| C:51 [MET] | B:39 [G] | 4.67 | 63.39 | |||
| C:51 [MET] | B:40 [C] | 4.14 | 63.39 | |||
| C:51 [MET] | B:41 [A] | 3.0 | 63.39 | |||
| C:52 [ARG] | B:36 [A] | 2.79 | base:SC | 82.71 | ||
| C:52 [ARG] | B:37 [U] | 3.32 | 82.71 | |||
| C:52 [ARG] | B:39 [G] | 3.25 | 82.71 | |||
| C:52 [ARG] | B:46 [G] | 3.12 | B:35 [C] | base:SC, base:SC | 82.71 | |
| C:53 [GLY] | B:39 [G] | 3.43 | 94.45 | |||
| C:54 [GLN] | B:39 [G] | 3.03 | base/AA stacks | 85.22 | ||
| C:54 [GLN] | B:40 [C] | 3.81 | 85.22 | |||
| C:56 [PHE] | B:40 [C] | 3.6 | 87.33 | |||
| C:56 [PHE] | B:41 [A] | 3.34 | base/AA stacks | 87.33 | ||
| C:80 [LYS] | B:38 [U] | 2.95 | base:SC | 79.6 | ||
| C:85 [GLN] | B:40 [C] | 2.94 | 35.0 | |||
| C:86 [TYR] | B:40 [C] | 3.11 | base:BB | 41.72 | ||
| C:87 [ALA] | B:40 [C] | 3.48 | 93.57 | |||
| C:87 [ALA] | B:41 [A] | 4.09 | 93.57 | |||
| C:88 [LYS] | B:40 [C] | 3.01 | base:BB, sugar:SC | 57.99 | ||
| C:89 [THR] | B:40 [C] | 4.72 | 40.07 | |||
| C:89 [THR] | B:41 [A] | 2.86 | base:BB | 40.07 | ||
| C:89 [THR] | B:42 [C] | 3.69 | base:SC | 40.07 | ||
| C:90 [ASP] | B:41 [A] | 3.48 | 38.58 | |||
| C:90 [ASP] | B:42 [C] | 3.04 | base:BB | 38.58 | ||
| C:91 [SER] | B:41 [A] | 2.75 | base:SC | 83.56 | ||
| C:91 [SER] | B:42 [C] | 3.43 | 83.56 | |||
| C:92 [ASP] | B:42 [C] | 2.94 | base:BB | base/AA stacks | 64.09 | |
| C:92 [ASP] | B:43 [U] | 4.53 | 64.09 | |||
| C:93 [ILE] | B:42 [C] | 4.84 | 40.1 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group141 | 1M5O_C_B | C: U1 small nuclear ribonucleoprotein a, Homo sapiens (genetically engineered) B: RNA hairpin ribozyme | P09012 | RNA-binding domain, RBD | Hairpin ribozyme 1 from viruses-like metatranscriptomes | ✘ |
|
Interologs
Total number of interologs for this interface: 12