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All interfaces > All interologs > Interface groups > group141 > 1M5O_C_B vs 4PKD_B_V

Interface analysis


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Common contacts -

1M5O_C
1M5O_B
4PKD_B
4PKD_V
Conserved?
C:19 [GLU] B:36 [A] B:19 [GLU] V:65 [A] ✔
C:19 [GLU] B:37 [U] B:19 [GLU] V:66 [U] ✔
C:19 [GLU] B:38 [U] B:19 [GLU] V:67 [U] ✔
C:19 [GLU] B:39 [G] B:19 [GLU] V:68 [G] ✔
C:13 [TYR] B:39 [G] B:13 [TYR] V:68 [G] ✔
C:13 [TYR] B:40 [C] B:13 [TYR] V:69 [C] ✔
C:91 [SER] B:41 [A] B:91 [SER] V:70 [A] ✔
C:91 [SER] B:42 [C] B:91 [SER] V:71 [C] ✔
C:15 [ASN] B:38 [U] B:15 [ASN] V:67 [U] ✔
C:15 [ASN] B:39 [G] B:15 [ASN] V:68 [G] ✔
C:90 [ASP] B:41 [A] B:90 [ASP] V:70 [A] ✔
C:90 [ASP] B:42 [C] B:90 [ASP] V:71 [C] ✔
C:87 [ALA] B:40 [C] B:87 [ALA] V:69 [C] ✔
C:87 [ALA] B:41 [A] B:87 [ALA] V:70 [A] ✔
C:17 [LEU] B:39 [G] B:17 [LEU] V:68 [G] ✔
C:11 [THR] B:41 [A] B:11 [THR] V:70 [A] ✔
C:88 [LYS] B:40 [C] B:88 [LYS] V:69 [C] ✔
C:49 [LEU] B:36 [A] B:49 [LEU] V:65 [A] ✔
C:49 [LEU] B:37 [U] B:49 [LEU] V:66 [U] ✔
C:49 [LEU] B:39 [G] B:49 [LEU] V:68 [G] ✔
C:49 [LEU] B:46 [G] B:49 [LEU] V:75 [G] ✔
C:22 [LYS] B:31 [A] B:22 [LYS] V:60 [G] ✔
C:53 [GLY] B:39 [G] B:53 [GLY] V:68 [G] ✔
C:54 [GLN] B:39 [G] B:54 [GLN] V:68 [G] ✔
C:54 [GLN] B:40 [C] B:54 [GLN] V:69 [C] ✔
C:48 [SER] B:45 [C] B:48 [SER] V:74 [C] ✔
C:48 [SER] B:46 [G] B:48 [SER] V:75 [G] ✔
C:51 [MET] B:39 [G] B:51 [MET] V:68 [G] ✔
C:51 [MET] B:40 [C] B:51 [MET] V:69 [C] ✔
C:51 [MET] B:41 [A] B:51 [MET] V:70 [A] ✔
C:86 [TYR] B:40 [C] B:86 [TYR] V:69 [C] ✔
C:85 [GLN] B:40 [C] B:85 [GLN] V:69 [C] ✔
C:80 [LYS] B:38 [U] B:80 [LYS] V:67 [U] ✔
C:46 [SER] B:44 [C] B:46 [SER] V:73 [C] ✔
C:46 [SER] B:45 [C] B:46 [SER] V:74 [C] ✔
C:16 [ASN] B:38 [U] B:16 [ASN] V:67 [U] ✔
C:16 [ASN] B:39 [G] B:16 [ASN] V:68 [G] ✔
C:44 [LEU] B:41 [A] B:44 [LEU] V:70 [A] ✔
C:44 [LEU] B:42 [C] B:44 [LEU] V:71 [C] ✔
C:56 [PHE] B:40 [C] B:56 [PHE] V:69 [C] ✔
C:56 [PHE] B:41 [A] B:56 [PHE] V:70 [A] ✔
C:92 [ASP] B:42 [C] B:92 [ASP] V:71 [C] ✔
C:92 [ASP] B:43 [U] B:92 [ASP] V:72 [U] ✔
C:52 [ARG] B:36 [A] B:52 [ARG] V:65 [A] ✔
C:52 [ARG] B:37 [U] B:52 [ARG] V:66 [U] ✔
C:52 [ARG] B:39 [G] B:52 [ARG] V:68 [G] ✔
C:52 [ARG] B:46 [G] B:52 [ARG] V:75 [G] ✔
C:89 [THR] B:40 [C] B:89 [THR] V:69 [C] ✔
C:89 [THR] B:41 [A] B:89 [THR] V:70 [A] ✔
C:89 [THR] B:42 [C] B:89 [THR] V:71 [C] ✔
C:47 [ARG] B:45 [C] B:47 [ARG] V:74 [C] ✔
C:47 [ARG] B:46 [G] B:47 [ARG] V:75 [G] ✔
C:50 [LYS] B:39 [G] B:50 [LYS] V:68 [G] ✔
C:49 [LEU] B:45 [C] B:49 [LEU] V:74 [C] ❌ 4PKD_B_V
C:50 [LYS] B:42 [C] B:50 [LYS] V:71 [C] ❌ 1M5O_C_B
C:50 [LYS] B:41 [A] B:50 [LYS] V:70 [A] ❌ 1M5O_C_B
C:22 [LYS] B:32 [A] B:22 [LYS] V:61 [A] ❌ 4PKD_V:61 no longer at interface
C:20 [LYS] B:34 [C] B:20 [LYS] V:63 [C] ❌ 4PKD_B:20, 4PKD_V:63 no longer at interface
C:22 [LYS] B:30 [C] B:22 [LYS] V:59 [GTP] ❌ 1M5O_B:30 no longer at interface
C:23 [LYS] B:30 [C] B:23 [LYS] V:59 [GTP] ❌ 1M5O_C:23, 1M5O_B:30 no longer at interface
C:24 [ASP] B:30 [C] B:24 [ASP] V:59 [GTP] ❌ 1M5O_C:24, 1M5O_B:30 no longer at interface
C:47 [ARG] B:30 [C] B:47 [ARG] V:59 [GTP] ❌ 1M5O_B:30 no longer at interface
C:6 [THR] B:40 [C] B:6 [THR] V:69 [C] ❌ 4PKD_B:6 no longer at interface
C:93 [ILE] B:42 [C] B:93 [ILE] V:71 [C] ❌ 4PKD_B:93 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.65 0.3 0.79 0.99 0.36 0.9 0.86 0.89 0.94 0.89 0.73


Other pairs involving 1M5O_C_B or 4PKD_B_V

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 4PKD_B_V 0.93 0.66 0.31 0.71 RNA-binding domain, RBD compare
1DRZ_A_B 1M5O_C_B 0.96 0.68 0.4 0.86 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
3MXH_P_R 4PKD_B_V 0.84 0.6 0.68 0.69 RNA-binding domain, RBD compare
1A9N_B_Q 1M5O_C_B 0.86 0.83 0.56 0.43 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
1M5O_C_B 1URN_A_P 0.96 0.93 0.59 0.93 RNA-binding domain, RBD compare
1M5O_C_B 6SQN_A_X 0.99 0.95 0.55 0.93 RNA-binding domain, RBD compare
1M5O_C_B 6F4H_A_B 0.95 0.95 0.48 0.7 RNA-binding domain, RBD compare
1M5O_C_B 3MXH_P_R 0.94 0.68 1.06 0.81 RNA-binding domain, RBD compare
1M5O_C_B 4PR6_A_B 0.97 0.69 0.39 0.85 RNA-binding domain, RBD compare
1M5O_C_B 2NZ4_A_P 0.97 0.63 0.49 0.86 RNA-binding domain, RBD compare
1M5O_C_B 1SJ3_P_R 0.96 0.69 0.42 0.91 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
1M5O_C_B 5DDP_D_A 0.95 0.72 0.25 0.77 RNA-binding domain, RBD compare
1M5O_C_B 6F4G_B_C 0.81 0.81 0.4 0.5 RNA-binding domain, RBD compare
4PKD_B_V 4PR6_A_B 0.94 0.66 0.3 0.69 RNA-binding domain, RBD compare
4PKD_B_V 6F4H_A_B 0.88 0.94 0.45 0.65 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
4PKD_B_V 6SQN_A_X 0.96 0.94 0.34 0.8 RNA-binding domain, RBD compare
4PKD_B_V 6F4G_B_C 0.81 0.81 0.46 0.5 RNA-binding domain, RBD compare
2NZ4_A_P 4PKD_B_V 0.94 0.52 0.55 0.69 RNA-binding domain, RBD compare
1SJ3_P_R 4PKD_B_V 0.95 0.66 0.28 0.82 RNA-binding domain, RBD compare