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All interfaces > All interologs > Interface groups > group141 > 1M5O_C_B vs 5DDP_D_A

Interface analysis


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Common contacts -

1M5O_C
1M5O_B
5DDP_D
5DDP_A
Conserved?
C:19 [GLU] B:36 [A] D:18 [GLU] A:35 [A] ✔
C:19 [GLU] B:37 [U] D:18 [GLU] A:36 [U] ✔
C:19 [GLU] B:38 [U] D:18 [GLU] A:37 [U] ✔
C:19 [GLU] B:39 [G] D:18 [GLU] A:38 [G] ✔
C:13 [TYR] B:39 [G] D:12 [TYR] A:38 [G] ✔
C:13 [TYR] B:40 [C] D:12 [TYR] A:39 [C] ✔
C:91 [SER] B:41 [A] D:90 [SER] A:40 [A] ✔
C:91 [SER] B:42 [C] D:90 [SER] A:41 [C] ✔
C:15 [ASN] B:38 [U] D:14 [ASN] A:37 [U] ✔
C:15 [ASN] B:39 [G] D:14 [ASN] A:38 [G] ✔
C:90 [ASP] B:41 [A] D:89 [ASP] A:40 [A] ✔
C:90 [ASP] B:42 [C] D:89 [ASP] A:41 [C] ✔
C:87 [ALA] B:40 [C] D:86 [ALA] A:39 [C] ✔
C:87 [ALA] B:41 [A] D:86 [ALA] A:40 [A] ✔
C:17 [LEU] B:39 [G] D:16 [LEU] A:38 [G] ✔
C:11 [THR] B:41 [A] D:10 [THR] A:40 [A] ✔
C:88 [LYS] B:40 [C] D:87 [LYS] A:39 [C] ✔
C:49 [LEU] B:36 [A] D:48 [LEU] A:35 [A] ✔
C:49 [LEU] B:37 [U] D:48 [LEU] A:36 [U] ✔
C:49 [LEU] B:39 [G] D:48 [LEU] A:38 [G] ✔
C:49 [LEU] B:45 [C] D:48 [LEU] A:44 [C] ✔
C:49 [LEU] B:46 [G] D:48 [LEU] A:45 [G] ✔
C:22 [LYS] B:31 [A] D:21 [LYS] A:30 [G] ✔
C:22 [LYS] B:32 [A] D:21 [LYS] A:31 [G] ✔
C:53 [GLY] B:39 [G] D:52 [GLY] A:38 [G] ✔
C:54 [GLN] B:39 [G] D:53 [GLN] A:38 [G] ✔
C:54 [GLN] B:40 [C] D:53 [GLN] A:39 [C] ✔
C:48 [SER] B:45 [C] D:47 [SER] A:44 [C] ✔
C:48 [SER] B:46 [G] D:47 [SER] A:45 [G] ✔
C:51 [MET] B:39 [G] D:50 [MET] A:38 [G] ✔
C:51 [MET] B:40 [C] D:50 [MET] A:39 [C] ✔
C:51 [MET] B:41 [A] D:50 [MET] A:40 [A] ✔
C:86 [TYR] B:40 [C] D:85 [TYR] A:39 [C] ✔
C:85 [GLN] B:40 [C] D:84 [GLN] A:39 [C] ✔
C:80 [LYS] B:38 [U] D:79 [LYS] A:37 [U] ✔
C:46 [SER] B:45 [C] D:45 [SER] A:44 [C] ✔
C:16 [ASN] B:38 [U] D:15 [ASN] A:37 [U] ✔
C:16 [ASN] B:39 [G] D:15 [ASN] A:38 [G] ✔
C:44 [LEU] B:41 [A] D:43 [LEU] A:40 [A] ✔
C:44 [LEU] B:42 [C] D:43 [LEU] A:41 [C] ✔
C:56 [PHE] B:40 [C] D:55 [PHE] A:39 [C] ✔
C:56 [PHE] B:41 [A] D:55 [PHE] A:40 [A] ✔
C:92 [ASP] B:42 [C] D:91 [ASP] A:41 [C] ✔
C:92 [ASP] B:43 [U] D:91 [ASP] A:42 [U] ✔
C:52 [ARG] B:36 [A] D:51 [ARG] A:35 [A] ✔
C:52 [ARG] B:37 [U] D:51 [ARG] A:36 [U] ✔
C:52 [ARG] B:39 [G] D:51 [ARG] A:38 [G] ✔
C:52 [ARG] B:46 [G] D:51 [ARG] A:45 [G] ✔
C:89 [THR] B:40 [C] D:88 [THR] A:39 [C] ✔
C:89 [THR] B:41 [A] D:88 [THR] A:40 [A] ✔
C:89 [THR] B:42 [C] D:88 [THR] A:41 [C] ✔
C:47 [ARG] B:45 [C] D:46 [ARG] A:44 [C] ✔
C:47 [ARG] B:46 [G] D:46 [ARG] A:45 [G] ✔
C:93 [ILE] B:42 [C] D:92 [ILE] A:41 [C] ✔
C:50 [LYS] B:39 [G] D:49 [LYS] A:38 [G] ✔
C:20 [LYS] B:32 [A] D:19 [LYS] A:31 [G] ❌ 1M5O_C_B
C:47 [ARG] B:31 [A] D:46 [ARG] A:30 [G] ❌ 1M5O_C_B
C:47 [ARG] B:32 [A] D:46 [ARG] A:31 [G] ❌ 1M5O_C_B
C:50 [LYS] B:46 [G] D:49 [LYS] A:45 [G] ❌ 1M5O_C_B
C:50 [LYS] B:40 [C] D:49 [LYS] A:39 [C] ❌ 1M5O_C_B
C:50 [LYS] B:41 [A] D:49 [LYS] A:40 [A] ❌ 1M5O_C_B
C:20 [LYS] B:34 [C] D:19 [LYS] A:33 [C] ❌ 5DDP_A:33 no longer at interface
C:46 [SER] B:44 [C] D:45 [SER] A:43 [C] ❌ 5DDP_A:43 no longer at interface
C:22 [LYS] B:30 [C] D:21 [LYS] A:29 [A] ❌ 1M5O_B:30 no longer at interface
C:47 [ARG] B:30 [C] D:46 [ARG] A:29 [A] ❌ 1M5O_B:30 no longer at interface
C:6 [THR] B:40 [C] D:5 [THR] A:39 [C] ❌ 5DDP_D:5 no longer at interface
C:23 [LYS] B:31 [A] D:22 [LYS] A:30 [G] ❌ 1M5O_C:23 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.72 0.25 0.77 0.98 0.3 0.97 0.92 0.95 0.93 0.70 0.50


Other pairs involving 1M5O_C_B or 5DDP_D_A

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 5DDP_D_A 0.93 0.72 0.43 0.69 RNA-binding domain, RBD compare
1DRZ_A_B 1M5O_C_B 0.96 0.68 0.4 0.86 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
4PR6_A_B 5DDP_D_A 0.93 0.72 0.39 0.69 RNA-binding domain, RBD compare
3MXH_P_R 5DDP_D_A 0.95 0.68 0.89 0.69 RNA-binding domain, RBD compare
1A9N_B_Q 1M5O_C_B 0.86 0.83 0.56 0.43 RNA-binding domain, RBD compare
1A9N_B_Q 5DDP_D_A 0.81 0.82 0.42 0.46 RNA-binding domain, RBD compare
1M5O_C_B 1URN_A_P 0.96 0.93 0.59 0.93 RNA-binding domain, RBD compare
1M5O_C_B 6SQN_A_X 0.99 0.95 0.55 0.93 RNA-binding domain, RBD compare
1M5O_C_B 6F4H_A_B 0.95 0.95 0.48 0.7 RNA-binding domain, RBD compare
1M5O_C_B 3MXH_P_R 0.94 0.68 1.06 0.81 RNA-binding domain, RBD compare
1M5O_C_B 4PR6_A_B 0.97 0.69 0.39 0.85 RNA-binding domain, RBD compare
1M5O_C_B 2NZ4_A_P 0.97 0.63 0.49 0.86 RNA-binding domain, RBD compare
1M5O_C_B 1SJ3_P_R 0.96 0.69 0.42 0.91 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
1M5O_C_B 5DDP_D_A 0.95 0.72 0.25 0.77 RNA-binding domain, RBD compare
1M5O_C_B 6F4G_B_C 0.81 0.81 0.4 0.5 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
2NZ4_A_P 5DDP_D_A 0.96 0.73 0.46 0.85 RNA-binding domain, RBD compare
1SJ3_P_R 5DDP_D_A 0.97 0.72 0.57 0.82 RNA-binding domain, RBD compare
5DDP_D_A 7DCO_R_G 0.74 0.54 2.57 0.21 compare
5DDP_D_A 6F4G_B_C 0.82 0.81 0.36 0.46 RNA-binding domain, RBD compare
5DDP_D_A 6F4H_A_B 0.92 0.96 0.33 0.68 RNA-binding domain, RBD compare