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All interfaces > All interologs > Interface groups > group141 > 1M5O_C_B vs 6F4G_B_C

Interface analysis


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Common contacts -

1M5O_C
1M5O_B
6F4G_B
6F4G_C
Conserved?
C:19 [GLU] B:36 [A] B:16 [GLU] C:9 [A] ✔
C:19 [GLU] B:37 [U] B:16 [GLU] C:10 [U] ✔
C:19 [GLU] B:39 [G] B:16 [GLU] C:12 [G] ✔
C:13 [TYR] B:39 [G] B:10 [TYR] C:12 [G] ✔
C:13 [TYR] B:40 [C] B:10 [TYR] C:13 [C] ✔
C:91 [SER] B:41 [A] B:88 [SER] C:14 [A] ✔
C:91 [SER] B:42 [C] B:88 [SER] C:15 [G] ✔
C:15 [ASN] B:38 [U] B:12 [ASN] C:11 [U] ✔
C:15 [ASN] B:39 [G] B:12 [ASN] C:12 [G] ✔
C:90 [ASP] B:41 [A] B:87 [ASP] C:14 [A] ✔
C:90 [ASP] B:42 [C] B:87 [ASP] C:15 [G] ✔
C:87 [ALA] B:40 [C] B:84 [SER] C:13 [C] ✔
C:87 [ALA] B:41 [A] B:84 [SER] C:14 [A] ✔
C:17 [LEU] B:39 [G] B:14 [LEU] C:12 [G] ✔
C:11 [THR] B:41 [A] B:8 [THR] C:14 [A] ✔
C:88 [LYS] B:40 [C] B:85 [LYS] C:13 [C] ✔
C:49 [LEU] B:37 [U] B:46 [LEU] C:10 [U] ✔
C:49 [LEU] B:39 [G] B:46 [LEU] C:12 [G] ✔
C:53 [GLY] B:39 [G] B:50 [GLY] C:12 [G] ✔
C:54 [GLN] B:39 [G] B:51 [GLN] C:12 [G] ✔
C:54 [GLN] B:40 [C] B:51 [GLN] C:13 [C] ✔
C:51 [MET] B:39 [G] B:48 [MET] C:12 [G] ✔
C:51 [MET] B:40 [C] B:48 [MET] C:13 [C] ✔
C:51 [MET] B:41 [A] B:48 [MET] C:14 [A] ✔
C:86 [TYR] B:40 [C] B:83 [TYR] C:13 [C] ✔
C:85 [GLN] B:40 [C] B:82 [ALA] C:13 [C] ✔
C:80 [LYS] B:38 [U] B:77 [LYS] C:11 [U] ✔
C:20 [LYS] B:34 [C] B:17 [LYS] C:7 [G] ✔
C:16 [ASN] B:38 [U] B:13 [ASN] C:11 [U] ✔
C:16 [ASN] B:39 [G] B:13 [ASN] C:12 [G] ✔
C:44 [LEU] B:41 [A] B:41 [VAL] C:14 [A] ✔
C:44 [LEU] B:42 [C] B:41 [VAL] C:15 [G] ✔
C:56 [PHE] B:40 [C] B:53 [PHE] C:13 [C] ✔
C:56 [PHE] B:41 [A] B:53 [PHE] C:14 [A] ✔
C:92 [ASP] B:42 [C] B:89 [ASP] C:15 [G] ✔
C:52 [ARG] B:37 [U] B:49 [ARG] C:10 [U] ✔
C:52 [ARG] B:39 [G] B:49 [ARG] C:12 [G] ✔
C:89 [THR] B:40 [C] B:86 [SER] C:13 [C] ✔
C:89 [THR] B:41 [A] B:86 [SER] C:14 [A] ✔
C:89 [THR] B:42 [C] B:86 [SER] C:15 [G] ✔
C:93 [ILE] B:42 [C] B:90 [ILE] C:15 [G] ✔
C:50 [LYS] B:39 [G] B:47 [LYS] C:12 [G] ✔
C:19 [GLU] B:38 [U] B:16 [GLU] C:11 [U] ❌ 6F4G_B_C
C:49 [LEU] B:36 [A] B:46 [LEU] C:9 [A] ❌ 6F4G_B_C
C:92 [ASP] B:43 [U] B:89 [ASP] C:16 [U] ❌ 6F4G_B_C
C:52 [ARG] B:36 [A] B:49 [ARG] C:9 [A] ❌ 6F4G_B_C
C:20 [LYS] B:36 [A] B:17 [LYS] C:9 [A] ❌ 1M5O_C_B
C:44 [LEU] B:43 [U] B:41 [VAL] C:16 [U] ❌ 1M5O_C_B
C:46 [SER] B:43 [U] B:43 [LEU] C:16 [U] ❌ 1M5O_C_B
C:46 [SER] B:41 [A] B:43 [LEU] C:14 [A] ❌ 1M5O_C_B
C:46 [SER] B:42 [C] B:43 [LEU] C:15 [G] ❌ 1M5O_C_B
C:50 [LYS] B:40 [C] B:47 [LYS] C:13 [C] ❌ 1M5O_C_B
C:50 [LYS] B:41 [A] B:47 [LYS] C:14 [A] ❌ 1M5O_C_B
C:92 [ASP] B:41 [A] B:89 [ASP] C:14 [A] ❌ 1M5O_C_B
C:46 [SER] B:44 [C] B:43 [LEU] C:17 [A] ❌ 6F4G_C:17 no longer at interface
C:20 [LYS] B:35 [C] B:17 [LYS] C:8 [U] ❌ 1M5O_B:35 no longer at interface
C:20 [LYS] B:48 [G] B:17 [LYS] C:21 [C] ❌ 1M5O_B:48 no longer at interface
C:6 [THR] B:40 [C] B:3 [MET] C:13 [C] ❌ 6F4G_B:3 no longer at interface
C:23 [LYS] B:43 [U] B:20 [LYS] C:16 [U] ❌ 1M5O_C:23 no longer at interface
C:27 [LYS] B:43 [U] B:24 [LYS] C:16 [U] ❌ 1M5O_C:27 no longer at interface
C:43 [ILE] B:43 [U] B:40 [ILE] C:16 [U] ❌ 1M5O_C:43 no longer at interface
C:45 [VAL] B:43 [U] B:42 [ALA] C:16 [U] ❌ 1M5O_C:45 no longer at interface
C:58 [ILE] B:41 [A] B:55 [ILE] C:14 [A] ❌ 1M5O_C:58 no longer at interface
C:83 [ARG] B:38 [U] B:80 [GLN] C:11 [U] ❌ 1M5O_C:83 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.81 0.4 0.50 0.97 0.28 0.93 0.64 0.81 0.79 0.52 0.45


Other pairs involving 1M5O_C_B or 6F4G_B_C

Total number of entries: 31

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 6F4G_B_C 0.80 0.83 0.38 0.43 RNA-binding domain, RBD compare
1DRZ_A_B 1M5O_C_B 0.96 0.68 0.4 0.86 RNA-binding domain, RBD compare
6F4G_B_C 6F4H_A_B 0.81 0.87 0.36 0.5 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_p_H 0.23 0.65 0.62 0.14 RNA-binding domain, RBD compare
6F4G_B_C 6SQN_A_X 0.91 0.87 0.39 0.6 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_X_G 0.33 0.62 3.54 0.12 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_R_G 0.76 0.68 2.57 0.14 compare
4ED5_A_D 6F4G_B_C 0.57 0.62 2.44 0.1 RNA-binding domain, RBD compare
1G2E_A_B 6F4G_B_C 0.57 0.61 3.03 0.15 RNA-binding domain, RBD compare
1URN_A_P 6F4G_B_C 0.78 0.85 0.36 0.58 RNA-binding domain, RBD compare
4PR6_A_B 6F4G_B_C 0.80 0.83 0.4 0.46 RNA-binding domain, RBD compare
3MXH_P_R 6F4G_B_C 0.80 0.77 0.94 0.46 RNA-binding domain, RBD compare
1A9N_B_Q 6F4G_B_C 0.94 0.92 0.25 0.79 RNA-binding domain, RBD compare
1A9N_B_Q 1M5O_C_B 0.86 0.83 0.56 0.43 RNA-binding domain, RBD compare
5TF6_A_B 6F4G_B_C 0.58 0.61 3.75 0.0 RNA-binding domain, RBD compare
1M5O_C_B 1URN_A_P 0.96 0.93 0.59 0.93 RNA-binding domain, RBD compare
1M5O_C_B 6SQN_A_X 0.99 0.95 0.55 0.93 RNA-binding domain, RBD compare
1M5O_C_B 6F4H_A_B 0.95 0.95 0.48 0.7 RNA-binding domain, RBD compare
1M5O_C_B 3MXH_P_R 0.94 0.68 1.06 0.81 RNA-binding domain, RBD compare
1M5O_C_B 4PR6_A_B 0.97 0.69 0.39 0.85 RNA-binding domain, RBD compare
1M5O_C_B 2NZ4_A_P 0.97 0.63 0.49 0.86 RNA-binding domain, RBD compare
1M5O_C_B 1SJ3_P_R 0.96 0.69 0.42 0.91 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
1M5O_C_B 5DDP_D_A 0.95 0.72 0.25 0.77 RNA-binding domain, RBD compare
1M5O_C_B 6F4G_B_C 0.81 0.81 0.4 0.5 RNA-binding domain, RBD compare
6DCL_A_D 6F4G_B_C 0.32 0.61 2.78 0.26 RNA-binding domain, RBD compare
4N0T_A_B 6F4G_B_C 0.58 0.61 3.62 0.0 RNA-binding domain, RBD compare
4PKD_B_V 6F4G_B_C 0.81 0.81 0.46 0.5 RNA-binding domain, RBD compare
2NZ4_A_P 6F4G_B_C 0.85 0.8 0.45 0.43 RNA-binding domain, RBD compare
1SJ3_P_R 6F4G_B_C 0.83 0.83 0.4 0.55 RNA-binding domain, RBD compare
5DDP_D_A 6F4G_B_C 0.82 0.81 0.36 0.46 RNA-binding domain, RBD compare