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All interfaces > All interologs > Interface groups > group141 > 4ED5_A_D

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4ED5_A
4ED5_D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:21 [ASN] D:10 [U] 2.75 base:SC 83.74
A:23 [ILE] D:8 [U] 3.44 61.06
A:23 [ILE] D:9 [U] 3.63 61.06
A:25 [ASN] D:8 [U] 3.12 sugar:SC base/AA stacks 68.4
A:26 [TYR] D:5 [U] 3.34 base/AA stacks 74.16
A:26 [TYR] D:7 [A] 3.61 74.16
A:26 [TYR] D:8 [U] 4.55 74.16
A:29 [GLN] D:6 [U] 3.34 25.29
A:29 [GLN] D:7 [A] 2.59 base:SC 25.29
A:50 [LYS] D:10 [U] 3.28 44.93
A:50 [LYS] D:11 [U] 4.84 44.93
A:52 [ILE] D:10 [U] 3.28 49.77
A:59 [HIS] D:7 [A] 3.35 base:SC 43.91
A:60 [SER] D:7 [A] 3.48 86.21
A:61 [LEU] D:7 [A] 2.52 sugar:BB 67.41
A:62 [GLY] D:7 [A] 4.3 84.99
A:63 [TYR] D:7 [A] 3.43 61.05
A:63 [TYR] D:8 [U] 3.76 61.05
A:63 [TYR] D:9 [U] 3.35 61.05
A:65 [PHE] D:9 [U] 3.33 79.09
A:65 [PHE] D:10 [U] 3.39 base/AA stacks 79.09
A:88 [SER] D:5 [U] 4.59 56.44
A:89 [LYS] D:5 [U] 2.62 sugar:SC 63.52
A:89 [LYS] D:6 [U] 3.28 63.52
A:89 [LYS] D:7 [A] 4.37 63.52
A:90 [THR] D:5 [U] 2.63 base:BB, base:BB 5.58
A:91 [ILE] D:5 [U] 4.85 62.2
A:92 [LYS] D:5 [U] 4.82 39.34
A:92 [LYS] D:8 [U] 2.95 base:SC 39.34
A:94 [SER] D:8 [U] 4.83 63.83
A:95 [TYR] D:9 [U] 4.52 0.0
A:96 [ALA] D:9 [U] 3.57 77.99
A:96 [ALA] D:10 [U] 4.7 77.99
A:97 [ARG] D:8 [U] 3.21 base:SC 58.03
A:97 [ARG] D:9 [U] 2.78 base:BB, base:BB 58.03
A:98 [PRO] D:9 [U] 4.06 56.76
A:99 [SER] D:9 [U] 2.74 sugar:SC 65.47
A:99 [SER] D:10 [U] 3.78 65.47
A:100 [SER] D:9 [U] 3.24 sugar:BB 57.69
A:103 [ILE] D:8 [U] 4.86 5.82
A:103 [ILE] D:9 [U] 3.64 5.82
A:104 [LYS] D:9 [U] 3.61 38.03
A:104 [LYS] D:10 [U] 3.05 38.03
A:105 [ASP] D:9 [U] 4.35 35.5
A:107 [ASN] D:4 [U] 2.69 base:SC 77.67
A:107 [ASN] D:8 [U] 4.51 77.67
A:109 [TYR] D:2 [U] 3.99 60.35
A:109 [TYR] D:3 [U] 3.31 base/AA stacks 60.35
A:133 [ILE] D:8 [U] 3.25 49.29
A:134 [ASN] D:8 [U] 3.52 base/AA stacks 68.86
A:136 [ARG] D:4 [U] 3.6 60.55
A:136 [ARG] D:5 [U] 3.23 60.55
A:138 [LEU] D:3 [U] 3.75 58.56
A:138 [LEU] D:4 [U] 3.52 58.56
A:138 [LEU] D:5 [U] 4.21 58.56
A:147 [ARG] D:2 [U] 2.7 71.37
A:147 [ARG] D:3 [U] 3.16 71.37
A:151 [PHE] D:3 [U] 3.33 83.12
A:151 [PHE] D:4 [U] 3.28 base/AA stacks 83.12
A:153 [ARG] D:8 [U] 3.15 base/AA stacks 43.7
A:153 [ARG] D:9 [U] 4.31 43.7
A:182 [LYS] D:3 [U] 2.69 base:SC 69.37
A:184 [ALA] D:3 [U] 3.89 98.56
A:184 [ALA] D:4 [U] 4.68 98.56
A:185 [ALA] D:3 [U] 2.99 base:BB 80.44

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 4ED5_A_D A: Elav-like protein 1, Homo sapiens (genetically engineered) D: N/A Q15717 RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4ED5_A_D 6F4G_B_C 0.57 0.62 2.44 0.1 RNA-binding domain, RBD compare
1A9N_B_Q 4ED5_A_D 0.54 0.62 2.45 0.1 RNA-binding domain, RBD compare
4ED5_A_D 6SQN_A_X 0.55 0.65 2.53 0.1 RNA-binding domain, RBD compare
4ED5_A_D 6F4H_A_B 0.56 0.65 2.49 0.1 RNA-binding domain, RBD compare
1G2E_A_B 4ED5_A_D 0.92 0.95 0.7 0.8 RNA-binding domain, RBD compare