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All interfaces > All interologs > Interface groups > group141 > 4PKD_B_V vs 6F4G_B_C

Interface analysis


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Common contacts -

4PKD_B
4PKD_V
6F4G_B
6F4G_C
Conserved?
B:19 [GLU] V:65 [A] B:16 [GLU] C:9 [A] ✔
B:19 [GLU] V:66 [U] B:16 [GLU] C:10 [U] ✔
B:19 [GLU] V:68 [G] B:16 [GLU] C:12 [G] ✔
B:91 [SER] V:70 [A] B:88 [SER] C:14 [A] ✔
B:91 [SER] V:71 [C] B:88 [SER] C:15 [G] ✔
B:87 [ALA] V:69 [C] B:84 [SER] C:13 [C] ✔
B:87 [ALA] V:70 [A] B:84 [SER] C:14 [A] ✔
B:53 [GLY] V:68 [G] B:50 [GLY] C:12 [G] ✔
B:56 [PHE] V:69 [C] B:53 [PHE] C:13 [C] ✔
B:56 [PHE] V:70 [A] B:53 [PHE] C:14 [A] ✔
B:15 [ASN] V:67 [U] B:12 [ASN] C:11 [U] ✔
B:15 [ASN] V:68 [G] B:12 [ASN] C:12 [G] ✔
B:17 [LEU] V:68 [G] B:14 [LEU] C:12 [G] ✔
B:11 [THR] V:70 [A] B:8 [THR] C:14 [A] ✔
B:54 [GLN] V:68 [G] B:51 [GLN] C:12 [G] ✔
B:54 [GLN] V:69 [C] B:51 [GLN] C:13 [C] ✔
B:51 [MET] V:68 [G] B:48 [MET] C:12 [G] ✔
B:51 [MET] V:69 [C] B:48 [MET] C:13 [C] ✔
B:51 [MET] V:70 [A] B:48 [MET] C:14 [A] ✔
B:92 [ASP] V:71 [C] B:89 [ASP] C:15 [G] ✔
B:50 [LYS] V:68 [G] B:47 [LYS] C:12 [G] ✔
B:50 [LYS] V:70 [A] B:47 [LYS] C:14 [A] ✔
B:88 [LYS] V:69 [C] B:85 [LYS] C:13 [C] ✔
B:49 [LEU] V:66 [U] B:46 [LEU] C:10 [U] ✔
B:49 [LEU] V:68 [G] B:46 [LEU] C:12 [G] ✔
B:85 [GLN] V:69 [C] B:82 [ALA] C:13 [C] ✔
B:80 [LYS] V:67 [U] B:77 [LYS] C:11 [U] ✔
B:44 [LEU] V:70 [A] B:41 [VAL] C:14 [A] ✔
B:44 [LEU] V:71 [C] B:41 [VAL] C:15 [G] ✔
B:89 [THR] V:69 [C] B:86 [SER] C:13 [C] ✔
B:89 [THR] V:70 [A] B:86 [SER] C:14 [A] ✔
B:89 [THR] V:71 [C] B:86 [SER] C:15 [G] ✔
B:13 [TYR] V:68 [G] B:10 [TYR] C:12 [G] ✔
B:13 [TYR] V:69 [C] B:10 [TYR] C:13 [C] ✔
B:90 [ASP] V:70 [A] B:87 [ASP] C:14 [A] ✔
B:90 [ASP] V:71 [C] B:87 [ASP] C:15 [G] ✔
B:86 [TYR] V:69 [C] B:83 [TYR] C:13 [C] ✔
B:16 [ASN] V:67 [U] B:13 [ASN] C:11 [U] ✔
B:16 [ASN] V:68 [G] B:13 [ASN] C:12 [G] ✔
B:52 [ARG] V:66 [U] B:49 [ARG] C:10 [U] ✔
B:52 [ARG] V:68 [G] B:49 [ARG] C:12 [G] ✔
B:19 [GLU] V:67 [U] B:16 [GLU] C:11 [U] ❌ 6F4G_B_C
B:92 [ASP] V:72 [U] B:89 [ASP] C:16 [U] ❌ 6F4G_B_C
B:50 [LYS] V:71 [C] B:47 [LYS] C:15 [G] ❌ 6F4G_B_C
B:49 [LEU] V:65 [A] B:46 [LEU] C:9 [A] ❌ 6F4G_B_C
B:52 [ARG] V:65 [A] B:49 [ARG] C:9 [A] ❌ 6F4G_B_C
B:23 [LYS] V:72 [U] B:20 [LYS] C:16 [U] ❌ 4PKD_B_V
B:44 [LEU] V:72 [U] B:41 [VAL] C:16 [U] ❌ 4PKD_B_V
B:46 [SER] V:72 [U] B:43 [LEU] C:16 [U] ❌ 4PKD_B_V
B:46 [SER] V:70 [A] B:43 [LEU] C:14 [A] ❌ 4PKD_B_V
B:46 [SER] V:71 [C] B:43 [LEU] C:15 [G] ❌ 4PKD_B_V
B:50 [LYS] V:69 [C] B:47 [LYS] C:13 [C] ❌ 4PKD_B_V
B:92 [ASP] V:70 [A] B:89 [ASP] C:14 [A] ❌ 4PKD_B_V
B:22 [LYS] V:60 [G] B:19 [LYS] C:3 [G] ❌ 6F4G_B:19, 6F4G_C:3 no longer at interface
B:46 [SER] V:73 [C] B:43 [LEU] C:17 [A] ❌ 6F4G_C:17 no longer at interface
B:20 [LYS] V:64 [C] B:17 [LYS] C:8 [U] ❌ 4PKD_B:20, 4PKD_V:64 no longer at interface
B:20 [LYS] V:77 [A] B:17 [LYS] C:21 [C] ❌ 4PKD_B:20, 4PKD_V:77 no longer at interface
B:20 [LYS] V:65 [A] B:17 [LYS] C:9 [A] ❌ 4PKD_B:20 no longer at interface
B:27 [LYS] V:72 [U] B:24 [LYS] C:16 [U] ❌ 4PKD_B:27 no longer at interface
B:43 [ILE] V:72 [U] B:40 [ILE] C:16 [U] ❌ 4PKD_B:43 no longer at interface
B:45 [VAL] V:72 [U] B:42 [ALA] C:16 [U] ❌ 4PKD_B:45 no longer at interface
B:58 [ILE] V:70 [A] B:55 [ILE] C:14 [A] ❌ 4PKD_B:58 no longer at interface
B:83 [ARG] V:67 [U] B:80 [GLN] C:11 [U] ❌ 4PKD_B:83 no longer at interface
B:93 [ILE] V:71 [C] B:90 [ILE] C:15 [G] ❌ 4PKD_B:93 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.81 0.46 0.50 0.93 0.34 0.79 0.57 0.81 0.82 0.63 0.48


Other pairs involving 4PKD_B_V or 6F4G_B_C

Total number of entries: 31

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 4PKD_B_V 0.93 0.66 0.31 0.71 RNA-binding domain, RBD compare
1DRZ_A_B 6F4G_B_C 0.80 0.83 0.38 0.43 RNA-binding domain, RBD compare
6F4G_B_C 6F4H_A_B 0.81 0.87 0.36 0.5 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_p_H 0.23 0.65 0.62 0.14 RNA-binding domain, RBD compare
6F4G_B_C 6SQN_A_X 0.91 0.87 0.39 0.6 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_X_G 0.33 0.62 3.54 0.12 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_R_G 0.76 0.68 2.57 0.14 compare
4ED5_A_D 6F4G_B_C 0.57 0.62 2.44 0.1 RNA-binding domain, RBD compare
1G2E_A_B 6F4G_B_C 0.57 0.61 3.03 0.15 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
1URN_A_P 6F4G_B_C 0.78 0.85 0.36 0.58 RNA-binding domain, RBD compare
4PR6_A_B 6F4G_B_C 0.80 0.83 0.4 0.46 RNA-binding domain, RBD compare
3MXH_P_R 6F4G_B_C 0.80 0.77 0.94 0.46 RNA-binding domain, RBD compare
3MXH_P_R 4PKD_B_V 0.84 0.6 0.68 0.69 RNA-binding domain, RBD compare
1A9N_B_Q 6F4G_B_C 0.94 0.92 0.25 0.79 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
5TF6_A_B 6F4G_B_C 0.58 0.61 3.75 0.0 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
1M5O_C_B 6F4G_B_C 0.81 0.81 0.4 0.5 RNA-binding domain, RBD compare
6DCL_A_D 6F4G_B_C 0.32 0.61 2.78 0.26 RNA-binding domain, RBD compare
4N0T_A_B 6F4G_B_C 0.58 0.61 3.62 0.0 RNA-binding domain, RBD compare
4PKD_B_V 4PR6_A_B 0.94 0.66 0.3 0.69 RNA-binding domain, RBD compare
4PKD_B_V 6F4H_A_B 0.88 0.94 0.45 0.65 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
4PKD_B_V 6SQN_A_X 0.96 0.94 0.34 0.8 RNA-binding domain, RBD compare
4PKD_B_V 6F4G_B_C 0.81 0.81 0.46 0.5 RNA-binding domain, RBD compare
2NZ4_A_P 4PKD_B_V 0.94 0.52 0.55 0.69 RNA-binding domain, RBD compare
2NZ4_A_P 6F4G_B_C 0.85 0.8 0.45 0.43 RNA-binding domain, RBD compare
1SJ3_P_R 6F4G_B_C 0.83 0.83 0.4 0.55 RNA-binding domain, RBD compare
1SJ3_P_R 4PKD_B_V 0.95 0.66 0.28 0.82 RNA-binding domain, RBD compare
5DDP_D_A 6F4G_B_C 0.82 0.81 0.36 0.46 RNA-binding domain, RBD compare