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All interfaces > All interologs > Interface groups > group141 > 5DDP_D_A vs 6F4G_B_C

Interface analysis


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Common contacts -

5DDP_D
5DDP_A
6F4G_B
6F4G_C
Conserved?
D:10 [THR] A:40 [A] B:8 [THR] C:14 [A] ✔
D:89 [ASP] A:40 [A] B:87 [ASP] C:14 [A] ✔
D:89 [ASP] A:41 [C] B:87 [ASP] C:15 [G] ✔
D:84 [GLN] A:39 [C] B:82 [ALA] C:13 [C] ✔
D:18 [GLU] A:35 [A] B:16 [GLU] C:9 [A] ✔
D:18 [GLU] A:36 [U] B:16 [GLU] C:10 [U] ✔
D:18 [GLU] A:38 [G] B:16 [GLU] C:12 [G] ✔
D:15 [ASN] A:37 [U] B:13 [ASN] C:11 [U] ✔
D:15 [ASN] A:38 [G] B:13 [ASN] C:12 [G] ✔
D:51 [ARG] A:36 [U] B:49 [ARG] C:10 [U] ✔
D:51 [ARG] A:38 [G] B:49 [ARG] C:12 [G] ✔
D:53 [GLN] A:38 [G] B:51 [GLN] C:12 [G] ✔
D:53 [GLN] A:39 [C] B:51 [GLN] C:13 [C] ✔
D:92 [ILE] A:41 [C] B:90 [ILE] C:15 [G] ✔
D:79 [LYS] A:37 [U] B:77 [LYS] C:11 [U] ✔
D:87 [LYS] A:39 [C] B:85 [LYS] C:13 [C] ✔
D:52 [GLY] A:38 [G] B:50 [GLY] C:12 [G] ✔
D:86 [ALA] A:39 [C] B:84 [SER] C:13 [C] ✔
D:86 [ALA] A:40 [A] B:84 [SER] C:14 [A] ✔
D:85 [TYR] A:39 [C] B:83 [TYR] C:13 [C] ✔
D:12 [TYR] A:38 [G] B:10 [TYR] C:12 [G] ✔
D:12 [TYR] A:39 [C] B:10 [TYR] C:13 [C] ✔
D:91 [ASP] A:41 [C] B:89 [ASP] C:15 [G] ✔
D:48 [LEU] A:36 [U] B:46 [LEU] C:10 [U] ✔
D:48 [LEU] A:38 [G] B:46 [LEU] C:12 [G] ✔
D:49 [LYS] A:38 [G] B:47 [LYS] C:12 [G] ✔
D:49 [LYS] A:39 [C] B:47 [LYS] C:13 [C] ✔
D:49 [LYS] A:40 [A] B:47 [LYS] C:14 [A] ✔
D:90 [SER] A:40 [A] B:88 [SER] C:14 [A] ✔
D:90 [SER] A:41 [C] B:88 [SER] C:15 [G] ✔
D:88 [THR] A:39 [C] B:86 [SER] C:13 [C] ✔
D:88 [THR] A:40 [A] B:86 [SER] C:14 [A] ✔
D:88 [THR] A:41 [C] B:86 [SER] C:15 [G] ✔
D:14 [ASN] A:37 [U] B:12 [ASN] C:11 [U] ✔
D:14 [ASN] A:38 [G] B:12 [ASN] C:12 [G] ✔
D:50 [MET] A:38 [G] B:48 [MET] C:12 [G] ✔
D:50 [MET] A:39 [C] B:48 [MET] C:13 [C] ✔
D:50 [MET] A:40 [A] B:48 [MET] C:14 [A] ✔
D:55 [PHE] A:39 [C] B:53 [PHE] C:13 [C] ✔
D:55 [PHE] A:40 [A] B:53 [PHE] C:14 [A] ✔
D:16 [LEU] A:38 [G] B:14 [LEU] C:12 [G] ✔
D:43 [LEU] A:40 [A] B:41 [VAL] C:14 [A] ✔
D:43 [LEU] A:41 [C] B:41 [VAL] C:15 [G] ✔
D:18 [GLU] A:37 [U] B:16 [GLU] C:11 [U] ❌ 6F4G_B_C
D:51 [ARG] A:35 [A] B:49 [ARG] C:9 [A] ❌ 6F4G_B_C
D:48 [LEU] A:35 [A] B:46 [LEU] C:9 [A] ❌ 6F4G_B_C
D:19 [LYS] A:35 [A] B:17 [LYS] C:9 [A] ❌ 5DDP_D_A
D:45 [SER] A:40 [A] B:43 [LEU] C:14 [A] ❌ 5DDP_D_A
D:45 [SER] A:41 [C] B:43 [LEU] C:15 [G] ❌ 5DDP_D_A
D:91 [ASP] A:40 [A] B:89 [ASP] C:14 [A] ❌ 5DDP_D_A
D:19 [LYS] A:34 [C] B:17 [LYS] C:8 [U] ❌ 5DDP_A:34 no longer at interface
D:19 [LYS] A:47 [G] B:17 [LYS] C:21 [C] ❌ 5DDP_A:47 no longer at interface
D:22 [LYS] A:43 [C] B:20 [LYS] C:16 [U] ❌ 5DDP_A:43 no longer at interface
D:26 [LYS] A:43 [C] B:24 [LYS] C:16 [U] ❌ 5DDP_D:26, 5DDP_A:43 no longer at interface
D:42 [ILE] A:43 [C] B:40 [ILE] C:16 [U] ❌ 5DDP_D:42, 5DDP_A:43 no longer at interface
D:43 [LEU] A:43 [C] B:41 [VAL] C:16 [U] ❌ 5DDP_A:43 no longer at interface
D:44 [VAL] A:43 [C] B:42 [ALA] C:16 [U] ❌ 5DDP_D:44, 5DDP_A:43 no longer at interface
D:45 [SER] A:43 [C] B:43 [LEU] C:16 [U] ❌ 5DDP_A:43 no longer at interface
D:4 [GLU] A:39 [C] B:2 [GLU] C:13 [C] ❌ 6F4G_B:2 no longer at interface
D:57 [ILE] A:40 [A] B:55 [ILE] C:14 [A] ❌ 5DDP_D:57 no longer at interface
D:82 [ARG] A:37 [U] B:80 [GLN] C:11 [U] ❌ 5DDP_D:82 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.81 0.36 0.46 0.95 0.25 0.94 0.54 0.82 0.81 0.62 0.61


Other pairs involving 5DDP_D_A or 6F4G_B_C

Total number of entries: 31

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 5DDP_D_A 0.93 0.72 0.43 0.69 RNA-binding domain, RBD compare
1DRZ_A_B 6F4G_B_C 0.80 0.83 0.38 0.43 RNA-binding domain, RBD compare
6F4G_B_C 6F4H_A_B 0.81 0.87 0.36 0.5 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_p_H 0.23 0.65 0.62 0.14 RNA-binding domain, RBD compare
6F4G_B_C 6SQN_A_X 0.91 0.87 0.39 0.6 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_X_G 0.33 0.62 3.54 0.12 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_R_G 0.76 0.68 2.57 0.14 compare
4ED5_A_D 6F4G_B_C 0.57 0.62 2.44 0.1 RNA-binding domain, RBD compare
1G2E_A_B 6F4G_B_C 0.57 0.61 3.03 0.15 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 6F4G_B_C 0.78 0.85 0.36 0.58 RNA-binding domain, RBD compare
4PR6_A_B 5DDP_D_A 0.93 0.72 0.39 0.69 RNA-binding domain, RBD compare
4PR6_A_B 6F4G_B_C 0.80 0.83 0.4 0.46 RNA-binding domain, RBD compare
3MXH_P_R 5DDP_D_A 0.95 0.68 0.89 0.69 RNA-binding domain, RBD compare
3MXH_P_R 6F4G_B_C 0.80 0.77 0.94 0.46 RNA-binding domain, RBD compare
1A9N_B_Q 6F4G_B_C 0.94 0.92 0.25 0.79 RNA-binding domain, RBD compare
1A9N_B_Q 5DDP_D_A 0.81 0.82 0.42 0.46 RNA-binding domain, RBD compare
5TF6_A_B 6F4G_B_C 0.58 0.61 3.75 0.0 RNA-binding domain, RBD compare
1M5O_C_B 5DDP_D_A 0.95 0.72 0.25 0.77 RNA-binding domain, RBD compare
1M5O_C_B 6F4G_B_C 0.81 0.81 0.4 0.5 RNA-binding domain, RBD compare
6DCL_A_D 6F4G_B_C 0.32 0.61 2.78 0.26 RNA-binding domain, RBD compare
4N0T_A_B 6F4G_B_C 0.58 0.61 3.62 0.0 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
4PKD_B_V 6F4G_B_C 0.81 0.81 0.46 0.5 RNA-binding domain, RBD compare
2NZ4_A_P 6F4G_B_C 0.85 0.8 0.45 0.43 RNA-binding domain, RBD compare
2NZ4_A_P 5DDP_D_A 0.96 0.73 0.46 0.85 RNA-binding domain, RBD compare
1SJ3_P_R 6F4G_B_C 0.83 0.83 0.4 0.55 RNA-binding domain, RBD compare
1SJ3_P_R 5DDP_D_A 0.97 0.72 0.57 0.82 RNA-binding domain, RBD compare
5DDP_D_A 7DCO_R_G 0.74 0.54 2.57 0.21 compare
5DDP_D_A 6F4G_B_C 0.82 0.81 0.36 0.46 RNA-binding domain, RBD compare
5DDP_D_A 6F4H_A_B 0.92 0.96 0.33 0.68 RNA-binding domain, RBD compare