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All interfaces > All interologs > Interface groups > group141 > 6XH2_A_D

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6XH2_A
6XH2_D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:2 [ALA] D:35 [A] 3.18 32.89
A:4 [PRO] D:35 [A] 3.97 20.79
A:6 [THR] D:35 [A] 4.11 17.73
A:13 [TYR] D:35 [A] 3.15 base/AA stacks 82.61
A:15 [ASN] D:35 [A] 3.37 54.23
A:19 [SER] D:24 [C] 4.48 39.02
A:20 [LYS] D:24 [C] 3.31 61.18
A:22 [LYS] D:25 [U] 3.08 base:SC 42.43
A:23 [LYS] D:22 [A] 3.17 D:40 [U] 43.17
A:23 [LYS] D:23 [U] 4.77 43.17
A:47 [ARG] D:22 [A] 3.35 D:40 [U] base/AA stacks 50.31
A:47 [ARG] D:23 [U] 2.78 sugar:SC base/AA stacks 50.31
A:47 [ARG] D:26 [G] 2.82 D:39 [C] base:SC, base:SC 50.31
A:47 [ARG] D:39 [C] 4.65 D:26 [G] 50.31
A:48 [THR] D:23 [U] 3.34 72.09
A:48 [THR] D:36 [G] 4.53 D:29 [C] 72.09
A:49 [ARG] D:23 [U] 3.4 base/AA stacks 36.59
A:49 [ARG] D:27 [A] 3.31 D:38 [U] base/AA stacks 36.59
A:49 [ARG] D:28 [G] 2.86 D:37 [C] base:SC 36.59
A:49 [ARG] D:29 [C] 3.62 D:36 [G] 36.59
A:49 [ARG] D:36 [G] 4.11 D:29 [C] 36.59
A:49 [ARG] D:37 [C] 3.8 D:28 [G] 36.59
A:50 [THR] D:34 [G] 4.52 D:30 [C] 41.33
A:51 [PRO] D:24 [C] 3.48 47.46
A:52 [ARG] D:29 [C] 4.62 D:36 [G] 85.42
A:52 [ARG] D:34 [G] 3.39 D:30 [C] base/AA stacks 85.42
A:52 [ARG] D:36 [G] 2.95 D:29 [C] base:SC, base:SC 85.42
A:54 [GLN] D:34 [G] 2.69 D:30 [C] sugar:SC 90.68
A:54 [GLN] D:35 [A] 3.3 90.68
A:54 [GLN] D:36 [G] 4.39 D:29 [C] 90.68
A:56 [PHE] D:35 [A] 3.69 82.28
A:85 [GLN] D:35 [A] 3.04 base:SC 46.95
A:86 [TYR] D:35 [A] 3.04 base:BB 57.18
A:87 [ALA] D:35 [A] 3.41 93.22
A:88 [LYS] D:35 [A] 2.79 base:BB 64.89
A:89 [THR] D:35 [A] 4.96 29.64

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 6XH2_A_D A: Tar-binding protein 6.6, Homo sapiens (genetically engineered) D: Trans-activation response element, Human immunodeficiency virus 1 (synthetic) P09012 RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6CMN_A_D 6XH2_A_D 0.99 0.99 0.17 0.95 RNA-binding domain, RBD compare
6DCL_A_D 6XH2_A_D 0.48 0.6 1.96 0.14 RNA-binding domain, RBD compare
6XH2_A_D 7DCO_X_G 0.57 0.61 1.84 0.0 RNA-binding domain, RBD compare
6XH2_A_D 6XH3_A_D 0.81 0.98 1.26 0.89 RNA-binding domain, RBD compare