Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
6XH2_A
|
6XH2_D
|
7DCO_X
|
7DCO_G
|
Conserved?
|
---|---|---|---|---|
A:13 [TYR] | D:35 [A] | X:34 [TYR] | G:520 [G] | ✔ |
A:87 [ALA] | D:35 [A] | X:107 [THR] | G:520 [G] | ✔ |
A:88 [LYS] | D:35 [A] | X:108 [PHE] | G:520 [G] | ✔ |
A:54 [GLN] | D:34 [G] | X:74 [PHE] | G:519 [U] | ✔ |
A:54 [GLN] | D:35 [A] | X:74 [PHE] | G:520 [G] | ✔ |
A:54 [GLN] | D:36 [G] | X:74 [PHE] | G:521 [U] | ✔ |
A:86 [TYR] | D:35 [A] | X:106 [HIS] | G:520 [G] | ✔ |
A:85 [GLN] | D:35 [A] | X:105 [ASP] | G:520 [G] | ✔ |
A:56 [PHE] | D:35 [A] | X:76 [TYR] | G:520 [G] | ✔ |
A:52 [ARG] | D:34 [G] | X:72 [GLN] | G:519 [U] | ✔ |
A:52 [ARG] | D:36 [G] | X:72 [GLN] | G:521 [U] | ❌ 7DCO_X_G |
A:89 [THR] | D:35 [A] | X:109 [TYR] | G:520 [G] | ❌ 7DCO_X_G |
A:87 [ALA] | D:36 [G] | X:107 [THR] | G:521 [U] | ❌ 6XH2_A_D |
A:88 [LYS] | D:36 [G] | X:108 [PHE] | G:521 [U] | ❌ 6XH2_A_D |
A:89 [THR] | D:36 [G] | X:109 [TYR] | G:521 [U] | ❌ 6XH2_A_D |
A:19 [SER] | D:34 [G] | X:40 [ARG] | G:519 [U] | ❌ 6XH2_A_D |
A:56 [PHE] | D:36 [G] | X:76 [TYR] | G:521 [U] | ❌ 6XH2_A_D |
A:15 [ASN] | D:35 [A] | X:36 [GLY] | G:520 [G] | ❌ 7DCO_X:36 no longer at interface |
A:50 [THR] | D:34 [G] | X:70 [GLU] | G:519 [U] | ❌ 7DCO_X:70 no longer at interface |
A:6 [THR] | D:35 [A] | X:26 [GLU] | G:520 [G] | ❌ 7DCO_X:26 no longer at interface |
A:48 [THR] | D:36 [G] | X:65 [ASP] | G:521 [U] | ❌ 7DCO_X:65 no longer at interface |
A:49 [ARG] | D:36 [G] | X:66 [GLU] | G:521 [U] | ❌ 7DCO_X:66 no longer at interface |
A:49 [ARG] | D:37 [C] | X:66 [GLU] | G:522 [U] | ❌ 7DCO_X:66 no longer at interface |
A:90 [ASP] | D:37 [C] | X:110 [ARG] | G:522 [U] | ❌ 6XH2_A:90 no longer at interface |
A:90 [ASP] | D:36 [G] | X:110 [ARG] | G:521 [U] | ❌ 6XH2_A:90 no longer at interface |
A:91 [LYS] | D:37 [C] | X:111 [PRO] | G:522 [U] | ❌ 6XH2_A:91 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
RNA-binding domain, RBD | 0.61 | 1.84 | 0.00 | 0.74 | 0.13 | 0.62 | 0.67 | 0.57 | 0.42 | 0.18 | 0.56 |
Other pairs involving 6XH2_A_D or 7DCO_X_G
Total number of entries: 11
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6XH2_A_D | 7DCO_X_G | 0.57 | 0.61 | 1.84 | 0.0 | RNA-binding domain, RBD | compare | |
6XH2_A_D | 6XH3_A_D | 0.81 | 0.98 | 1.26 | 0.89 | RNA-binding domain, RBD | compare | |
6F4G_B_C | 7DCO_X_G | 0.33 | 0.62 | 3.54 | 0.12 | RNA-binding domain, RBD | compare | |
1URN_A_P | 7DCO_X_G | 0.42 | 0.64 | 2.53 | 0.12 | RNA-binding domain, RBD | compare | |
6XH3_A_D | 7DCO_X_G | 0.50 | 0.63 | 1.21 | 0.0 | RNA-binding domain, RBD | compare | |
1A9N_B_Q | 7DCO_X_G | 0.31 | 0.63 | 3.58 | 0.12 | RNA-binding domain, RBD | compare | |
6SQN_A_X | 7DCO_X_G | 0.45 | 0.66 | 2.52 | 0.12 | RNA-binding domain, RBD | compare | |
6CMN_A_D | 6XH2_A_D | 0.99 | 0.99 | 0.17 | 0.95 | RNA-binding domain, RBD | compare | |
6CMN_A_D | 7DCO_X_G | 0.53 | 0.62 | 1.23 | 0.0 | RNA-binding domain, RBD | compare | |
6DCL_A_D | 6XH2_A_D | 0.48 | 0.6 | 1.96 | 0.14 | RNA-binding domain, RBD | compare | |
6F4H_A_B | 7DCO_X_G | 0.43 | 0.65 | 2.51 | 0.12 | RNA-binding domain, RBD | compare |