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All interfaces > All interologs > Interface groups > group141 > 7DCO_4_G

Interface analysis

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7DCO_4
7DCO_G
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
4:10 [THR] G:483 [A] 3.07 base:SC 95.34
4:12 [TYR] G:481 [A] 3.12 base/AA stacks 71.04
4:22 [LYS] G:484 [A] 4.83 72.53
4:37 [ARG] G:483 [A] 4.24 62.94
4:39 [LYS] G:483 [A] 3.04 sugar:SC 13.87
4:39 [LYS] G:484 [A] 3.38 13.87
4:40 [TYR] G:484 [A] 3.81 48.82
4:41 [PRO] G:482 [A] 3.94 64.56
4:41 [PRO] G:483 [A] 4.67 64.56
4:41 [PRO] G:484 [A] 3.72 64.56
4:42 [LYS] G:484 [A] 3.05 base:BB, sugar:BB 52.06
4:43 [ASP] G:482 [A] 3.03 90.44
4:43 [ASP] G:484 [A] 4.94 90.44
4:44 [LYS] G:484 [A] 3.07 65.62
4:50 [GLN] G:481 [A] 4.7 56.02
4:50 [GLN] G:482 [A] 4.73 56.02
4:52 [TYR] G:481 [A] 3.5 77.71
4:52 [TYR] G:482 [A] 2.89 sugar:SC 77.71
4:52 [TYR] G:483 [A] 3.04 77.71
4:54 [PHE] G:481 [A] 3.55 89.9
4:54 [PHE] G:483 [A] 3.08 89.9
4:56 [GLU] G:483 [A] 4.36 70.01
4:84 [ARG] G:479 [A] 4.65 60.96
4:84 [ARG] G:480 [A] 3.28 60.96
4:84 [ARG] G:481 [A] 4.37 60.96
4:85 [GLN] G:481 [A] 4.5 48.04
4:86 [VAL] G:481 [A] 3.36 28.57

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 7DCO_4_G 4: Hsh49 isoform 1, Saccharomyces cerevisiae (natural) G: Pre-mRNA, Saccharomyces cerevisiae (natural) RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1URN_A_P 7DCO_4_G 0.23 0.6 1.36 0.17 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_4_G 0.43 0.58 1.31 0.17 RNA-binding domain, RBD compare
6CMN_A_D 7DCO_4_G 0.65 0.58 1.84 0.12 RNA-binding domain, RBD compare
6F4H_A_B 7DCO_4_G 0.35 0.61 1.28 0.17 RNA-binding domain, RBD compare