RNAprotDB

All interfaces > All interologs > Interface groups > group141 > 7DCO_R_G

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7DCO_R
7DCO_G
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
R:41 [PHE] G:108 [U] 4.18 0.0
R:42 [ALA] G:108 [U] 4.5 0.0
R:43 [GLY] G:108 [U] 4.39 0.0
R:44 [ASN] G:108 [U] 3.66 0.0
R:44 [ASN] G:111 [U] 2.45 base:SC 0.0
R:46 [ARG] G:111 [U] 4.23 0.0
R:123 [ASP] G:113 [U] 4.15 0.0
R:124 [MET] G:113 [U] 3.87 0.0
R:136 [THR] G:114 [U] 3.92 0.0
R:138 [TYR] G:112 [U] 3.68 0.0
R:138 [TYR] G:113 [U] 3.2 base/AA stacks 0.0
R:140 [GLY] G:112 [U] 3.88 0.0
R:141 [GLY] G:111 [U] 4.55 0.0
R:141 [GLY] G:112 [U] 3.2 0.0
R:143 [ASP] G:111 [U] 4.93 0.0
R:174 [ARG] G:114 [U] 3.31 0.0
R:174 [ARG] G:115 [U] 3.06 0.0
R:176 [VAL] G:114 [U] 4.46 0.0
R:176 [VAL] G:115 [U] 4.45 0.0
R:178 [SER] G:112 [U] 4.64 0.0
R:179 [LYS] G:112 [U] 3.39 0.0
R:179 [LYS] G:113 [U] 4.1 0.0
R:180 [ASN] G:112 [U] 2.81 0.0
R:181 [CYS] G:112 [U] 2.94 0.0
R:181 [CYS] G:113 [U] 3.75 0.0
R:183 [PHE] G:113 [U] 3.51 0.0
R:183 [PHE] G:114 [U] 3.21 base/AA stacks 0.0
R:222 [LEU] G:111 [U] 3.8 0.0
R:222 [LEU] G:112 [U] 4.88 0.0
R:224 [LYS] G:112 [U] 4.28 0.0
R:224 [LYS] G:113 [U] 3.01 0.0
R:225 [TRP] G:113 [U] 3.01 base:BB 0.0
R:226 [ALA] G:113 [U] 3.61 0.0
R:226 [ALA] G:114 [U] 4.24 0.0
R:227 [ASN] G:113 [U] 2.93 base:BB base/AA stacks 0.0
R:227 [ASN] G:114 [U] 3.78 0.0
R:228 [GLU] G:114 [U] 4.51 0.0
R:229 [ASP] G:114 [U] 2.8 sugar:SC base/AA stacks 0.0
R:230 [PRO] G:114 [U] 3.41 0.0
R:230 [PRO] G:115 [U] 2.91 0.0
R:231 [ASP] G:114 [U] 3.37 0.0
R:231 [ASP] G:115 [U] 3.64 0.0
R:232 [PRO] G:115 [U] 3.77 0.0

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 7DCO_R_G R: Pre-mRNA-splicing factor cwc2, Saccharomyces cerevisiae (natural) G: Pre-mRNA, Saccharomyces cerevisiae (natural) A0A6A5Q155 ✘

Interologs

Total number of interologs for this interface: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1URN_A_P 7DCO_R_G 0.75 0.7 2.57 0.21 compare
5DDP_D_A 7DCO_R_G 0.74 0.54 2.57 0.21 compare
1DRZ_A_B 7DCO_R_G 0.76 0.51 2.54 0.17 compare
4PR6_A_B 7DCO_R_G 0.75 0.51 2.49 0.17 compare
1A9N_B_Q 7DCO_R_G 0.79 0.68 2.58 0.17 compare
6SQN_A_X 7DCO_R_G 0.73 0.72 2.65 0.17 compare
1SJ3_P_R 7DCO_R_G 0.76 0.5 2.55 0.17 compare
6F4H_A_B 7DCO_R_G 0.77 0.7 2.58 0.17 compare
6F4G_B_C 7DCO_R_G 0.76 0.68 2.57 0.14 compare