RNAprotDB

Contacts -

4PR6_A	4PR6_B	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
A:6 [THR]	B:152 [C]	4.37				31.58
A:11 [THR]	B:153 [A]	4.62				87.65
A:13 [TYR]	B:151 [G]	3.31		base:SC		81.95
A:13 [TYR]	B:152 [C]	3.52			base/AA stacks	81.95
A:15 [ASN]	B:150 [U]	3.67				54.1
A:15 [ASN]	B:151 [G]	3.17		base:SC		54.1
A:16 [ASN]	B:150 [U]	2.79		base:SC		98.89
A:16 [ASN]	B:151 [G]	3.0		base:BB		98.89
A:17 [LEU]	B:151 [G]	4.35				74.84
A:19 [GLU]	B:148 [A]	3.97				49.91
A:19 [GLU]	B:149 [U]	2.96		base:SC		49.91
A:19 [GLU]	B:150 [U]	4.46				49.91
A:19 [GLU]	B:151 [G]	2.8		base:SC		49.91
A:20 [LYS]	B:146 [C]	3.92	B:159 [G]			60.55
A:22 [LYS]	B:143 [A]	3.59	B:162 [G]			58.0
A:22 [LYS]	B:144 [C]	3.09	B:161 [G]			58.0
A:44 [LEU]	B:153 [A]	4.55				31.51
A:46 [SER]	B:157 [C]	3.44				6.42
A:47 [ARG]	B:143 [A]	4.47	B:162 [G]			51.98
A:47 [ARG]	B:144 [C]	4.38	B:161 [G]			51.98
A:47 [ARG]	B:157 [C]	4.19				51.98
A:48 [SER]	B:157 [C]	3.62				69.32
A:48 [SER]	B:158 [G]	3.61	B:147 [C]			69.32
A:49 [LEU]	B:148 [A]	3.85				34.83
A:49 [LEU]	B:149 [U]	4.43				34.83
A:49 [LEU]	B:151 [G]	4.99				34.83
A:49 [LEU]	B:157 [C]	4.71				34.83
A:49 [LEU]	B:158 [G]	2.71	B:147 [C]			34.83
A:50 [LYS]	B:151 [G]	2.65		sugar:BB		56.05
A:51 [MSE]	B:151 [G]	3.17				47.98
A:51 [MSE]	B:152 [C]	3.56				47.98
A:51 [MSE]	B:153 [A]	3.52				47.98
A:52 [ARG]	B:147 [C]	4.97	B:158 [G]			82.72
A:52 [ARG]	B:148 [A]	2.89		base:SC		82.72
A:52 [ARG]	B:149 [U]	3.44				82.72
A:52 [ARG]	B:151 [G]	3.11				82.72
A:52 [ARG]	B:158 [G]	3.21	B:147 [C]	base:SC, base:SC		82.72
A:53 [GLY]	B:151 [G]	3.42				89.8
A:54 [GLN]	B:151 [G]	3.17			base/AA stacks	86.83
A:54 [GLN]	B:152 [C]	3.77				86.83
A:56 [PHE]	B:152 [C]	3.61				84.47
A:56 [PHE]	B:153 [A]	3.33			base/AA stacks	84.47
A:58 [ILE]	B:153 [A]	4.91				73.46
A:80 [LYS]	B:150 [U]	2.83		base:SC		70.64
A:83 [ARG]	B:150 [U]	2.5		base:SC		30.89
A:85 [GLN]	B:152 [C]	2.89		base:SC		45.24
A:86 [TYR]	B:152 [C]	2.94		base:BB		40.65
A:87 [ALA]	B:152 [C]	3.38				94.33
A:87 [ALA]	B:153 [A]	4.19				94.33
A:88 [LYS]	B:152 [C]	2.86		base:BB, sugar:SC		58.92
A:89 [THR]	B:152 [C]	4.51				52.65
A:89 [THR]	B:153 [A]	3.02		base:BB		52.65
A:89 [THR]	B:154 [C]	4.0				52.65
A:90 [ASP]	B:153 [A]	3.72				34.94
A:90 [ASP]	B:154 [C]	3.12		base:BB		34.94
A:91 [SER]	B:153 [A]	2.75		base:SC, base:SC		85.74
A:91 [SER]	B:154 [C]	3.4				85.74
A:92 [ASP]	B:154 [C]	2.96		base:BB, base:BB	base/AA stacks	62.84
A:93 [ILE]	B:154 [C]	4.78				14.03

Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Interface 1	Interface 2	Percentage conservation	Interface TM-score	Interface RMSD	Percentage identity	Common ECOD label(s)	Explore both interfaces
1DRZ_A_B	4PR6_A_B	0.99	1.0	0.09	0.92	RNA-binding domain, RBD	compare
1URN_A_P	4PR6_A_B	0.93	0.94	0.27	0.83	RNA-binding domain, RBD	compare
4PR6_A_B	5DDP_D_A	0.93	0.72	0.39	0.69	RNA-binding domain, RBD	compare
4PR6_A_B	6F4H_A_B	0.94	0.95	0.38	0.68	RNA-binding domain, RBD	compare
4PR6_A_B	6F4G_B_C	0.80	0.83	0.4	0.46	RNA-binding domain, RBD	compare
4PR6_A_B	7DCO_R_G	0.75	0.51	2.49	0.17		compare
4PR6_A_B	6SQN_A_X	0.95	0.96	0.3	0.89	RNA-binding domain, RBD	compare
3MXH_P_R	4PR6_A_B	0.93	0.65	0.96	0.78	RNA-binding domain, RBD	compare
1A9N_B_Q	4PR6_A_B	0.81	0.85	0.49	0.54	RNA-binding domain, RBD	compare
1M5O_C_B	4PR6_A_B	0.97	0.69	0.39	0.85	RNA-binding domain, RBD	compare
4PKD_B_V	4PR6_A_B	0.94	0.66	0.3	0.69	RNA-binding domain, RBD	compare
2NZ4_A_P	4PR6_A_B	0.96	0.66	0.34	0.85	RNA-binding domain, RBD	compare
1SJ3_P_R	4PR6_A_B	0.97	0.95	0.29	0.97	RNA-binding domain, RBD	compare

RNAprotDB

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Contacts -

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Interologs