RNAprotDB

All interfaces > All interologs > Interface groups > group30 > 7D3J_A_B

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7D3J_A
7D3J_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:11 [THR] B:24 [U] 3.8 C:19 [DA] 0.0
A:12 [ARG] B:24 [U] 3.32 C:19 [DA] 0.0
A:13 [LYS] B:24 [U] 3.6 C:19 [DA] 0.0
A:14 [ALA] B:24 [U] 2.96 C:19 [DA] sugar:BB 0.0
A:14 [ALA] B:25 [A] 3.42 C:18 [DT] 0.0
A:16 [THR] B:7 [G] 3.04 B:23 [C] sugar:SC 0.0
A:16 [THR] B:8 [U] 4.21 B:22 [A] 0.0
A:16 [THR] B:25 [A] 3.84 C:18 [DT] 0.0
A:17 [THR] B:7 [G] 3.88 B:23 [C] 0.0
A:18 [LYS] B:6 [U] 3.42 0.0
A:18 [LYS] B:7 [G] 3.65 B:23 [C] 0.0
A:20 [ILE] B:3 [U] 3.56 0.0
A:20 [ILE] B:6 [U] 3.79 0.0
A:22 [ARG] B:1 [A] 3.41 0.0
A:22 [ARG] B:2 [U] 3.74 0.0
A:126 [HIS] B:30 [G] 4.55 C:13 [DC] 0.0
A:315 [MET] B:29 [A] 4.89 C:14 [DT] 0.0
A:318 [LYS] B:29 [A] 3.67 C:14 [DT] base:SC 0.0
A:318 [LYS] B:30 [G] 4.17 C:13 [DC] 0.0
A:354 [GLU] B:40 [A] 4.9 C:3 [DT] 0.0
A:354 [GLU] B:41 [U] 3.87 C:2 [DA] 0.0
A:354 [GLU] B:42 [A] 4.53 C:1 [DT] 0.0
A:355 [SER] B:40 [A] 4.6 C:3 [DT] 0.0
A:356 [ASP] B:40 [A] 3.02 C:3 [DT] sugar:SC 0.0
A:415 [ASN] B:43 [G] 4.4 0.0
A:431 [GLN] B:42 [A] 3.05 C:1 [DT] 0.0
A:431 [GLN] B:43 [G] 4.97 0.0
A:460 [LYS] B:31 [G] 4.01 C:12 [DC] 0.0
A:460 [LYS] B:32 [A] 3.02 C:11 [DT] 0.0
A:463 [LYS] B:31 [G] 3.99 C:12 [DC] 0.0
A:463 [LYS] B:32 [A] 3.38 C:11 [DT] 0.0
A:464 [GLN] B:31 [G] 3.21 C:12 [DC] 0.0
A:464 [GLN] B:32 [A] 3.17 C:11 [DT] 0.0
A:465 [LYS] B:30 [G] 3.81 C:13 [DC] 0.0
A:465 [LYS] B:31 [G] 3.09 C:12 [DC] 0.0
A:466 [ILE] B:30 [G] 3.86 C:13 [DC] 0.0
A:467 [ASN] B:29 [A] 3.09 C:14 [DT] sugar:SC 0.0
A:467 [ASN] B:30 [G] 3.3 C:13 [DC] sugar:SC 0.0
A:468 [PRO] B:29 [A] 3.37 C:14 [DT] 0.0
A:468 [PRO] B:30 [G] 4.09 C:13 [DC] 0.0
A:470 [ILE] B:28 [A] 3.38 C:15 [DT] 0.0
A:470 [ILE] B:29 [A] 3.84 C:14 [DT] 0.0
A:471 [GLN] B:27 [U] 4.68 C:16 [DA] 0.0
A:471 [GLN] B:28 [A] 3.81 C:15 [DT] 0.0
A:472 [LYS] B:27 [U] 3.35 C:16 [DA] 0.0
A:472 [LYS] B:28 [A] 4.82 C:15 [DT] 0.0
A:473 [TYR] B:27 [U] 3.4 C:16 [DA] sugar:BB 0.0
A:473 [TYR] B:28 [A] 4.08 C:15 [DT] 0.0
A:475 [SER] B:26 [U] 4.01 C:17 [DA] 0.0
A:489 [ILE] B:1 [A] 3.56 0.0
A:493 [ASP] B:1 [A] 4.22 0.0
A:494 [LYS] B:2 [U] 3.01 base:SC 0.0
A:494 [LYS] B:3 [U] 4.49 0.0
A:497 [HIS] B:1 [A] 2.94 sugar:SC base/AA stacks 0.0
A:497 [HIS] B:2 [U] 3.68 0.0
A:498 [ASN] B:2 [U] 3.29 0.0
A:503 [ARG] B:1 [A] 4.22 0.0
A:503 [ARG] B:2 [U] 2.93 sugar:SC base/AA stacks 0.0
A:503 [ARG] B:4 [U] 3.56 0.0
A:507 [ASP] B:2 [U] 2.81 base:SC 0.0
A:507 [ASP] B:3 [U] 3.57 0.0
A:507 [ASP] B:4 [U] 3.92 0.0
A:508 [ASN] B:4 [U] 4.85 0.0
A:509 [TYR] B:3 [U] 2.89 base/AA stacks 0.0
A:509 [TYR] B:4 [U] 3.65 0.0
A:509 [TYR] B:5 [U] 3.77 0.0
A:509 [TYR] B:6 [U] 2.44 0.0
A:511 [TRP] B:1 [A] 3.31 0.0
A:511 [TRP] B:2 [U] 3.25 base/AA stacks 0.0
A:511 [TRP] B:3 [U] 2.89 base:SC 0.0
A:528 [HIS] B:1 [A] 3.31 base/AA stacks 0.0
A:530 [ALA] B:3 [U] 3.63 0.0
A:532 [SER] B:6 [U] 3.37 0.0
A:532 [SER] B:7 [G] 2.55 B:23 [C] 0.0
A:533 [SER] B:7 [G] 3.26 B:23 [C] 0.0
A:534 [THR] B:6 [U] 4.28 0.0
A:534 [THR] B:7 [G] 2.62 B:23 [C] 0.0
A:535 [ARG] B:7 [G] 3.32 B:23 [C] 0.0
A:535 [ARG] B:23 [C] 3.63 B:7 [G] base/AA stacks 0.0
A:535 [ARG] B:24 [U] 2.86 C:19 [DA] 0.0
A:535 [ARG] B:25 [A] 4.39 C:18 [DT] 0.0
A:539 [GLU] B:23 [C] 4.71 B:7 [G] 0.0
A:560 [LYS] B:21 [C] 4.95 B:9 [G] 0.0
A:560 [LYS] B:22 [A] 3.24 B:8 [U] 0.0
A:561 [THR] B:23 [C] 3.81 B:7 [G] 0.0
A:567 [LYS] B:21 [C] 3.22 B:9 [G] 0.0
A:568 [PRO] B:18 [U] 4.06 0.0
A:569 [ALA] B:18 [U] 3.69 0.0
A:570 [LEU] B:18 [U] 2.93 base:BB 0.0
A:575 [ILE] B:18 [U] 3.64 0.0
A:578 [ILE] B:18 [U] 3.49 0.0
A:578 [ILE] B:19 [G] 4.62 B:11 [C] 0.0
A:579 [ARG] B:18 [U] 3.01 0.0
A:582 [PRO] B:5 [U] 3.83 0.0
A:583 [VAL] B:16 [G] 4.04 B:12 [C] 0.0
A:584 [GLY] B:6 [U] 2.91 base:BB 0.0
A:585 [LEU] B:5 [U] 3.23 0.0
A:585 [LEU] B:6 [U] 3.66 0.0
A:586 [ARG] B:16 [G] 4.03 B:12 [C] 0.0
A:586 [ARG] B:19 [G] 4.47 B:11 [C] 0.0
A:587 [LYS] B:9 [G] 4.44 B:21 [C] 0.0
A:587 [LYS] B:10 [C] 4.02 B:20 [G] 0.0
A:587 [LYS] B:11 [C] 4.45 B:19 [G] 0.0
A:587 [LYS] B:19 [G] 3.16 B:11 [C] base:SC 0.0
A:587 [LYS] B:20 [G] 3.36 B:10 [C] base:SC 0.0
A:587 [LYS] B:21 [C] 4.04 B:9 [G] 0.0
A:588 [VAL] B:6 [U] 3.24 0.0
A:588 [VAL] B:7 [G] 4.05 B:23 [C] 0.0
A:589 [LYS] B:5 [U] 3.06 0.0
A:590 [LYS] B:18 [U] 3.52 0.0
A:590 [LYS] B:19 [G] 3.65 B:11 [C] 0.0
A:590 [LYS] B:20 [G] 2.35 B:10 [C] 0.0
A:591 [ARG] B:7 [G] 2.97 B:23 [C] base:SC, base:SC 0.0
A:591 [ARG] B:8 [U] 3.42 B:22 [A] 0.0
A:591 [ARG] B:9 [G] 4.98 B:21 [C] 0.0
A:591 [ARG] B:22 [A] 3.77 B:8 [U] 0.0
A:591 [ARG] B:23 [C] 4.43 B:7 [G] 0.0
A:592 [GLN] B:5 [U] 4.97 0.0
A:594 [ARG] B:18 [U] 2.92 base:SC, base:SC, sugar:SC 0.0
A:594 [ARG] B:19 [G] 4.92 B:11 [C] 0.0
A:594 [ARG] B:20 [G] 3.22 B:10 [C] 0.0
A:620 [ARG] B:26 [U] 4.32 C:17 [DA] 0.0
A:620 [ARG] B:27 [U] 2.55 C:16 [DA] 0.0
A:620 [ARG] B:28 [A] 4.96 C:15 [DT] 0.0
A:625 [GLU] B:26 [U] 4.55 C:17 [DA] 0.0
A:627 [THR] B:25 [A] 3.36 C:18 [DT] sugar:SC 0.0
A:629 [ALA] B:24 [U] 4.98 C:19 [DA] 0.0
A:686 [VAL] B:21 [C] 4.52 B:9 [G] 0.0
A:687 [GLU] B:20 [G] 4.35 B:10 [C] 0.0
A:687 [GLU] B:21 [C] 4.95 B:9 [G] 0.0
A:688 [SER] B:11 [C] 3.51 B:19 [G] 0.0
A:688 [SER] B:19 [G] 4.86 B:11 [C] 0.0
A:688 [SER] B:20 [G] 2.64 B:10 [C] base:SC, base:SC 0.0
A:688 [SER] B:21 [C] 4.78 B:9 [G] 0.0
A:689 [GLN] B:19 [G] 3.02 B:11 [C] base:BB 0.0
A:689 [GLN] B:20 [G] 2.86 B:10 [C] sugar:BB 0.0
A:690 [VAL] B:11 [C] 4.93 B:19 [G] 0.0
A:690 [VAL] B:12 [C] 3.48 B:16 [G] 0.0
A:690 [VAL] B:16 [G] 4.31 B:12 [C] 0.0
A:690 [VAL] B:17 [U] 4.77 0.0
A:690 [VAL] B:19 [G] 4.17 B:11 [C] 0.0
A:691 [ARG] B:14 [U] 4.4 0.0
A:691 [ARG] B:16 [G] 4.7 B:12 [C] 0.0
A:691 [ARG] B:17 [U] 3.32 base/AA stacks 0.0
A:693 [LYS] B:13 [A] 4.96 0.0
A:693 [LYS] B:14 [U] 3.7 0.0
A:695 [TYR] B:11 [C] 4.56 B:19 [G] 0.0
A:695 [TYR] B:12 [C] 4.13 B:16 [G] 0.0
A:695 [TYR] B:13 [A] 2.8 0.0
A:697 [GLN] B:10 [C] 2.39 B:20 [G] sugar:SC 0.0
A:697 [GLN] B:11 [C] 3.1 B:19 [G] 0.0
A:697 [GLN] B:20 [G] 3.5 B:10 [C] base:SC 0.0
A:700 [TYR] B:12 [C] 3.96 B:16 [G] 0.0
A:700 [TYR] B:13 [A] 2.73 0.0
A:702 [GLY] B:13 [A] 4.94 0.0
A:703 [VAL] B:13 [A] 3.51 0.0
A:707 [TYR] B:13 [A] 3.24 base/AA stacks 0.0
A:754 [TYR] B:11 [C] 4.69 B:19 [G] 0.0
A:754 [TYR] B:12 [C] 2.25 B:16 [G] 0.0
A:754 [TYR] B:13 [A] 4.82 0.0
A:765 [GLN] B:35 [G] 4.66 C:8 [DC] 0.0
A:765 [GLN] B:36 [G] 2.98 C:7 [DC] 0.0
A:769 [ARG] B:36 [G] 3.61 C:7 [DC] 0.0
A:769 [ARG] B:37 [A] 2.93 C:6 [DT] 0.0
A:790 [LYS] B:13 [A] 3.09 sugar:SC 0.0
A:791 [LEU] B:13 [A] 4.19 0.0
A:795 [LYS] B:12 [C] 4.46 B:16 [G] 0.0
A:795 [LYS] B:15 [C] 4.64 0.0
A:796 [LEU] B:12 [C] 3.57 B:16 [G] 0.0
A:796 [LEU] B:13 [A] 3.92 0.0
A:796 [LEU] B:15 [C] 4.31 0.0
A:797 [SER] B:11 [C] 3.16 B:19 [G] 0.0
A:797 [SER] B:12 [C] 3.02 B:16 [G] 0.0
A:798 [SER] B:11 [C] 3.91 B:19 [G] 0.0
A:798 [SER] B:12 [C] 3.45 B:16 [G] 0.0
A:799 [LEU] B:10 [C] 3.61 B:20 [G] 0.0
A:799 [LEU] B:11 [C] 4.54 B:19 [G] 0.0
A:808 [LYS] B:34 [U] 4.88 C:9 [DA] 0.0
A:811 [LYS] B:34 [U] 4.74 C:9 [DA] 0.0
A:811 [LYS] B:35 [G] 3.75 C:8 [DC] 0.0
A:812 [SER] B:35 [G] 3.27 C:8 [DC] sugar:SC 0.0
A:812 [SER] B:36 [G] 3.74 C:7 [DC] 0.0
A:815 [GLY] B:36 [G] 3.26 C:7 [DC] 0.0
A:816 [THR] B:36 [G] 3.37 C:7 [DC] 0.0
A:816 [THR] B:37 [A] 3.58 C:6 [DT] 0.0
A:819 [GLY] B:36 [G] 4.1 C:7 [DC] 0.0
A:819 [GLY] B:37 [A] 4.16 C:6 [DT] 0.0
A:820 [HIS] B:36 [G] 4.74 C:7 [DC] 0.0
A:820 [HIS] B:37 [A] 2.84 C:6 [DT] 0.0
A:820 [HIS] B:38 [A] 4.28 C:5 [DT] 0.0
A:823 [LYS] B:37 [A] 3.98 C:6 [DT] 0.0
A:823 [LYS] B:38 [A] 2.72 C:5 [DT] 0.0
A:859 [LYS] B:10 [C] 2.98 B:20 [G] 0.0
A:859 [LYS] B:11 [C] 2.28 B:19 [G] 0.0
A:862 [ASN] B:9 [G] 3.32 B:21 [C] 0.0
A:862 [ASN] B:10 [C] 3.7 B:20 [G] 0.0
A:863 [LYS] B:10 [C] 3.8 B:20 [G] 0.0
A:863 [LYS] B:11 [C] 2.56 B:19 [G] 0.0
A:865 [LYS] B:8 [U] 4.77 B:22 [A] 0.0
A:865 [LYS] B:23 [C] 4.7 B:7 [G] 0.0
A:865 [LYS] B:25 [A] 3.98 C:18 [DT] 0.0
A:866 [SER] B:9 [G] 4.35 B:21 [C] 0.0
A:866 [SER] B:10 [C] 3.01 B:20 [G] sugar:SC 0.0
A:869 [GLU] B:22 [A] 3.62 B:8 [U] 0.0
A:869 [GLU] B:23 [C] 3.42 B:7 [G] 0.0
A:869 [GLU] B:25 [A] 4.88 C:18 [DT] 0.0
A:870 [VAL] B:22 [A] 3.83 B:8 [U] 0.0
A:873 [ASN] B:22 [A] 3.28 B:8 [U] 0.0
A:873 [ASN] B:23 [C] 3.05 B:7 [G] 0.0
A:900 [THR] B:32 [A] 3.01 C:11 [DT] sugar:BB 0.0
A:900 [THR] B:33 [A] 3.56 C:10 [DT] 0.0
A:901 [LYS] B:32 [A] 4.79 C:11 [DT] 0.0
A:901 [LYS] B:33 [A] 3.53 C:10 [DT] 0.0
A:901 [LYS] B:34 [U] 4.82 C:9 [DA] 0.0
A:902 [LYS] B:32 [A] 4.99 C:11 [DT] 0.0
A:902 [LYS] B:33 [A] 2.74 C:10 [DT] 0.0
A:904 [LYS] B:34 [U] 4.7 C:9 [DA] 0.0
A:905 [LYS] B:34 [U] 4.44 C:9 [DA] 0.0
A:906 [SER] B:34 [U] 3.2 C:9 [DA] 0.0
A:906 [SER] B:35 [G] 3.66 C:8 [DC] 0.0
A:909 [ASN] B:33 [A] 3.33 C:10 [DT] 0.0
A:909 [ASN] B:34 [U] 2.96 C:9 [DA] 0.0
A:910 [SER] B:34 [U] 3.76 C:9 [DA] 0.0
A:910 [SER] B:35 [G] 4.67 C:8 [DC] 0.0
A:913 [MET] B:33 [A] 3.84 C:10 [DT] 0.0
A:913 [MET] B:34 [U] 3.56 C:9 [DA] 0.0
A:923 [LYS] B:23 [C] 3.04 B:7 [G] sugar:SC 0.0
A:923 [LYS] B:24 [U] 3.73 C:19 [DA] 0.0
A:923 [LYS] B:25 [A] 4.91 C:18 [DT] 0.0
A:926 [GLU] B:24 [U] 3.98 C:19 [DA] 0.0
A:927 [MET] B:23 [C] 3.49 B:7 [G] 0.0
A:927 [MET] B:24 [U] 3.72 C:19 [DA] 0.0

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group30 7D3J_A_B A: 12i1-wt, Lachnospiraceae bacterium nd2006 (genetically engineered) B: RNA (43-mer), Lachnospiraceae bacterium nd2006 (genetically engineered) ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
7D3J_A_B 7EU9_A_B 0.98 1.0 0.3 0.94 compare