Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
4ZLR_A
|
4ZLR_C
|
6FQL_A
|
6FQL_B
|
Conserved?
|
---|---|---|---|---|
A:934 [ARG] | C:4 [U] | A:723 [ASN] | B:9 [A] | ✔ |
A:933 [ASN] | C:4 [U] | A:722 [PHE] | B:9 [A] | ✔ |
A:933 [ASN] | C:5 [U] | A:722 [PHE] | B:10 [U] | ✔ |
A:847 [ARG] | C:2 [U] | A:628 [LYS] | B:7 [U] | ✔ |
A:848 [SER] | C:2 [U] | A:629 [ASP] | B:7 [U] | ✔ |
A:977 [HIS] | C:5 [U] | A:770 [ARG] | B:10 [U] | ✔ |
A:875 [ARG] | C:3 [G] | A:660 [TRP] | B:8 [A] | ✔ |
A:875 [ARG] | C:4 [U] | A:660 [TRP] | B:9 [A] | ✔ |
A:961 [ILE] | C:4 [U] | A:754 [GLN] | B:9 [A] | ✔ |
A:934 [ARG] | C:3 [G] | A:723 [ASN] | B:8 [A] | ❌ 6FQL_A_B |
A:934 [ARG] | C:5 [U] | A:723 [ASN] | B:10 [U] | ❌ 6FQL_A_B |
A:782 [GLU] | C:2 [U] | A:564 [ARG] | B:7 [U] | ❌ 6FQL_A_B |
A:891 [LYS] | C:3 [G] | A:676 [ARG] | B:8 [A] | ❌ 6FQL_A_B |
A:875 [ARG] | C:2 [U] | A:660 [TRP] | B:7 [U] | ❌ 6FQL_A_B |
A:800 [ASN] | C:2 [U] | A:582 [SER] | B:7 [U] | ❌ 6FQL_A_B |
A:782 [GLU] | C:3 [G] | A:564 [ARG] | B:8 [A] | ❌ 4ZLR_A_C |
A:799 [THR] | C:3 [G] | A:581 [ARG] | B:8 [A] | ❌ 4ZLR_A_C |
A:800 [ASN] | C:3 [G] | A:582 [SER] | B:8 [A] | ❌ 4ZLR_A_C |
A:847 [ARG] | C:3 [G] | A:628 [LYS] | B:8 [A] | ❌ 4ZLR_A_C |
A:891 [LYS] | C:2 [U] | A:676 [ARG] | B:7 [U] | ❌ 4ZLR_A_C |
A:1001 [HIS] | C:5 [U] | A:797 [MET] | B:10 [U] | ❌ 6FQL_A:797 no longer at interface |
A:960 [PRO] | C:4 [U] | A:753 [PRO] | B:9 [A] | ❌ 6FQL_A:753 no longer at interface |
A:1002 [ALA] | C:4 [U] | A:798 [ASP] | B:9 [A] | ❌ 6FQL_A:798 no longer at interface |
A:1002 [ALA] | C:5 [U] | A:798 [ASP] | B:10 [U] | ❌ 6FQL_A:798 no longer at interface |
A:959 [TYR] | C:4 [U] | A:751 [LEU] | B:9 [A] | ❌ 6FQL_A:751 no longer at interface |
A:959 [TYR] | C:5 [U] | A:751 [LEU] | B:10 [U] | ❌ 6FQL_A:751 no longer at interface |
A:917 [PRO] | C:3 [G] | A:706 [PRO] | B:8 [A] | ❌ 6FQL_A:706 no longer at interface |
A:915 [GLU] | C:3 [G] | A:704 [ASP] | B:8 [A] | ❌ 6FQL_A:704 no longer at interface |
A:893 [MET] | C:3 [G] | A:678 [HIS] | B:8 [A] | ❌ 6FQL_A:678 no longer at interface |
A:976 [ASN] | C:4 [U] | A:769 [SER] | B:9 [A] | ❌ 6FQL_A:769 no longer at interface |
A:976 [ASN] | C:5 [U] | A:769 [SER] | B:10 [U] | ❌ 6FQL_A:769 no longer at interface |
A:1004 [CYS] | C:4 [U] | A:800 [PRO] | B:9 [A] | ❌ 6FQL_A:800 no longer at interface |
A:1004 [CYS] | C:5 [U] | A:800 [PRO] | B:10 [U] | ❌ 6FQL_A:800 no longer at interface |
A:916 [PHE] | C:3 [G] | A:705 [SER] | B:8 [A] | ❌ 6FQL_A:705 no longer at interface |
A:916 [PHE] | C:4 [U] | A:705 [SER] | B:9 [A] | ❌ 6FQL_A:705 no longer at interface |
A:1003 [GLN] | C:4 [U] | A:799 [ARG] | B:9 [A] | ❌ 6FQL_A:799 no longer at interface |
A:1003 [GLN] | C:5 [U] | A:799 [ARG] | B:10 [U] | ❌ 6FQL_A:799 no longer at interface |
A:890 [CYS] | C:3 [G] | A:675 [THR] | B:8 [A] | ❌ 6FQL_A:675 no longer at interface |
A:873 [HIS] | C:2 [U] | A:658 [TYR] | B:7 [U] | ❌ 4ZLR_A:873 no longer at interface |
A:918 [ASN] | C:4 [U] | A:707 [ARG] | B:9 [A] | ❌ 4ZLR_A:918 no longer at interface |
A:918 [ASN] | C:3 [G] | A:707 [ARG] | B:8 [A] | ❌ 4ZLR_A:918 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
6-bladed | 0.84 | 2.36 | 0.00 | 0.86 | 0.1 | 0.71 | 0.8 | 0.19 | 0.05 | 0.00 | 0.66 |
Other pairs involving 4ZLR_A_C or 6FQL_A_B
Total number of entries: 3
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
4ZLR_A_C | 6FQL_A_B | 0.19 | 0.84 | 2.36 | 0.0 | 6-bladed | compare | |
4ZLR_A_C | 6FQ3_A_B | 0.17 | 0.84 | 2.23 | 0.0 | 6-bladed | compare | |
6FQ3_A_B | 6FQL_A_B | 0.99 | 1.0 | 0.1 | 0.4 | 6-bladed | compare |