RNAprotDB

All interfaces > All interologs > Interface groups > group54 > 7O7Y_Bk_B5

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7O7Y_Bk
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Bk:2 [PRO] B5:2379 [A] 3.17 B5:2362 [U] 86.9
Bk:2 [PRO] B5:2380 [A] 2.99 B5:2283 [U] 86.9
Bk:2 [PRO] B5:2484 [A] 3.43 B5:2536 [G] 86.9
Bk:2 [PRO] B5:2485 [A] 3.57 B5:2535 [U] 86.9
Bk:2 [PRO] B5:2486 [G] 4.48 B5:2534 [U] 86.9
Bk:2 [PRO] B5:2535 [U] 3.34 B5:2485 [A] 86.9
Bk:2 [PRO] B5:2536 [G] 3.34 B5:2484 [A] 86.9
Bk:3 [ARG] B5:2380 [A] 4.78 B5:2283 [U] 64.26
Bk:3 [ARG] B5:2381 [U] 4.39 B5:2282 [G] 64.26
Bk:3 [ARG] B5:2485 [A] 4.96 B5:2535 [U] 64.26
Bk:3 [ARG] B5:2486 [G] 3.44 B5:2534 [U] 64.26
Bk:3 [ARG] B5:2535 [U] 3.6 B5:2485 [A] 64.26
Bk:4 [LYS] B5:2534 [U] 3.42 B5:2486 [G] sugar:SC 67.68
Bk:4 [LYS] B5:2535 [U] 3.65 B5:2485 [A] 67.68
Bk:17 [ARG] B5:2615 [C] 2.84 B5:2390 [G] 76.45
Bk:17 [ARG] B5:2616 [G] 2.98 B5:2386 [A] 76.45
Bk:19 [ASP] B5:2615 [C] 4.58 B5:2390 [G] 53.82
Bk:19 [ASP] B5:2616 [G] 3.22 B5:2386 [A] 53.82
Bk:19 [ASP] B5:2617 [C] 4.25 B5:2385 [G] 53.82
Bk:24 [LYS] B5:2378 [G] 4.59 B5:2363 [C] 47.22
Bk:24 [LYS] B5:2379 [A] 4.42 B5:2362 [U] 47.22
Bk:24 [LYS] B5:2539 [A] 3.25 base:SC 47.22
Bk:26 [LYS] B5:2538 [A] 3.56 B5:2482 [U] 71.16
Bk:26 [LYS] B5:2539 [A] 2.66 71.16
Bk:28 [ASN] B5:2538 [A] 2.74 B5:2482 [U] 30.58
Bk:28 [ASN] B5:2539 [A] 3.98 30.58
Bk:33 [LYS] B5:2535 [U] 2.85 B5:2485 [A] 98.66
Bk:33 [LYS] B5:2536 [G] 2.66 B5:2484 [A] 98.66
Bk:33 [LYS] B5:2537 [G] 3.52 B5:2483 [G] 98.66
Bk:33 [LYS] B5:2538 [A] 3.12 B5:2482 [U] 98.66
Bk:35 [LYS] B5:2536 [G] 3.16 B5:2484 [A] 98.61
Bk:35 [LYS] B5:2537 [G] 2.74 B5:2483 [G] 98.61
Bk:35 [LYS] B5:2538 [A] 2.32 B5:2482 [U] 98.61
Bk:35 [LYS] B5:2539 [A] 3.03 base:SC, base:SC 98.61
Bk:37 [ARG] B5:2379 [A] 3.26 B5:2362 [U] 97.77
Bk:37 [ARG] B5:2380 [A] 2.9 B5:2283 [U] 97.77
Bk:38 [CYS] B5:2616 [G] 4.6 B5:2386 [A] 82.13
Bk:39 [SER] B5:2616 [G] 3.39 B5:2386 [A] 57.85
Bk:39 [SER] B5:2617 [C] 2.34 B5:2385 [G] 57.85
Bk:40 [ARG] B5:2380 [A] 3.52 B5:2283 [U] 77.55
Bk:40 [ARG] B5:2381 [U] 3.29 B5:2282 [G] 77.55
Bk:40 [ARG] B5:2382 [C] 4.45 B5:2620 [G] 77.55
Bk:40 [ARG] B5:2615 [C] 3.24 B5:2390 [G] 77.55
Bk:40 [ARG] B5:2616 [G] 3.01 B5:2386 [A] 77.55
Bk:41 [TYR] B5:2380 [A] 3.32 B5:2283 [U] 53.74
Bk:41 [TYR] B5:2381 [U] 2.82 B5:2282 [G] 53.74
Bk:41 [TYR] B5:2615 [C] 3.12 B5:2390 [G] 53.74
Bk:41 [TYR] B5:2616 [G] 4.59 B5:2386 [A] 53.74
Bk:42 [LEU] B5:2379 [A] 3.84 B5:2362 [U] 90.53
Bk:42 [LEU] B5:2380 [A] 2.49 B5:2283 [U] 90.53
Bk:42 [LEU] B5:2535 [U] 4.42 B5:2485 [A] 90.53
Bk:42 [LEU] B5:2536 [G] 4.11 B5:2484 [A] 90.53
Bk:42 [LEU] B5:2537 [G] 4.14 B5:2483 [G] 90.53
Bk:42 [LEU] B5:2539 [A] 4.93 90.53
Bk:43 [TYR] B5:2615 [C] 4.18 B5:2390 [G] 94.33
Bk:44 [THR] B5:2535 [U] 3.22 B5:2485 [A] 99.0
Bk:44 [THR] B5:2536 [G] 2.86 B5:2484 [A] 99.0
Bk:46 [VAL] B5:2535 [U] 4.32 B5:2485 [A] 61.35
Bk:69 [LEU] B5:2539 [A] 3.55 59.84
Bk:70 [LYS] B5:2539 [A] 4.05 59.35
Bk:70 [LYS] B5:2557 [G] 4.91 B5:2545 [C] 59.35

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group54 7O7Y_Bk_B5 Bk: El38, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1U001 Signal recognition particle alu RNA binding heterodimer SRP9/14-related Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_k_1 7O7Y_Bk_B5 0.39 0.91 0.89 0.08 Signal recognition particle alu RNA binding heterodimer SRP9/14-related Eukaryotic large subunit ribosomal RNA compare
6AZ3_k_3 7O7Y_Bk_B5 0.99 0.88 1.0 0.21 Signal recognition particle alu RNA binding heterodimer SRP9/14-related compare