Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
1VQ8_1
|
1VQ8_0
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
1:1 [THR] | 0:830 [G] | 4.66 | 0:851 [C] | 75.76 | ||
1:1 [THR] | 0:831 [U] | 4.68 | 75.76 | |||
1:1 [THR] | 0:845 [U] | 4.89 | 75.76 | |||
1:1 [THR] | 0:1836 [A] | 3.07 | 0:778 [C] | 75.76 | ||
1:1 [THR] | 0:1837 [G] | 2.94 | 75.76 | |||
1:2 [GLY] | 0:845 [U] | 3.64 | 36.53 | |||
1:2 [GLY] | 0:846 [A] | 4.68 | 0:837 [U] | 36.53 | ||
1:2 [GLY] | 0:1836 [A] | 3.43 | 0:778 [C] | 36.53 | ||
1:2 [GLY] | 0:1837 [G] | 3.47 | 36.53 | |||
1:3 [ALA] | 0:778 [C] | 4.74 | 0:1836 [A] | 55.27 | ||
1:3 [ALA] | 0:882 [A] | 3.36 | 55.27 | |||
1:3 [ALA] | 0:883 [U] | 3.99 | 55.27 | |||
1:3 [ALA] | 0:1836 [A] | 3.34 | 0:778 [C] | 55.27 | ||
1:3 [ALA] | 0:1837 [G] | 3.19 | base:BB | 55.27 | ||
1:4 [GLY] | 0:845 [U] | 3.41 | 74.18 | |||
1:4 [GLY] | 0:882 [A] | 3.54 | 74.18 | |||
1:4 [GLY] | 0:1837 [G] | 3.28 | base:BB | 74.18 | ||
1:5 [THR] | 0:843 [A] | 3.77 | 0:838 [C] | 78.39 | ||
1:5 [THR] | 0:844 [A] | 4.46 | 78.39 | |||
1:5 [THR] | 0:845 [U] | 2.64 | 78.39 | |||
1:5 [THR] | 0:882 [A] | 3.78 | 78.39 | |||
1:5 [THR] | 0:1688 [G] | 3.4 | sugar:SC | 78.39 | ||
1:5 [THR] | 0:1694 [G] | 3.0 | 0:1687 [C] | base:BB | 78.39 | |
1:5 [THR] | 0:1695 [G] | 4.99 | 0:1686 [C] | 78.39 | ||
1:6 [PRO] | 0:845 [U] | 3.96 | 10.5 | |||
1:6 [PRO] | 0:846 [A] | 3.87 | 0:837 [U] | 10.5 | ||
1:6 [PRO] | 0:1694 [G] | 3.82 | 0:1687 [C] | 10.5 | ||
1:6 [PRO] | 0:1695 [G] | 2.78 | 0:1686 [C] | sugar:BB | 10.5 | |
1:7 [SER] | 0:778 [C] | 3.48 | 0:1836 [A] | sugar:SC | 69.54 | |
1:7 [SER] | 0:779 [U] | 4.87 | 0:776 [A] | 69.54 | ||
1:7 [SER] | 0:1695 [G] | 4.91 | 0:1686 [C] | 69.54 | ||
1:7 [SER] | 0:1836 [A] | 3.32 | 0:778 [C] | 69.54 | ||
1:8 [GLN] | 0:882 [A] | 4.83 | 2.99 | |||
1:8 [GLN] | 0:1687 [C] | 2.59 | 0:1694 [G] | sugar:BB | 2.99 | |
1:8 [GLN] | 0:1688 [G] | 3.39 | 2.99 | |||
1:8 [GLN] | 0:1694 [G] | 4.21 | 0:1687 [C] | 2.99 | ||
1:9 [GLY] | 0:1687 [C] | 2.88 | 0:1694 [G] | 76.1 | ||
1:9 [GLY] | 0:1694 [G] | 3.46 | 0:1687 [C] | 76.1 | ||
1:9 [GLY] | 0:1695 [G] | 3.09 | 0:1686 [C] | base:BB | 76.1 | |
1:9 [GLY] | 0:1696 [U] | 3.78 | 0:1682 [A] | 76.1 | ||
1:10 [LYS] | 0:777 [U] | 4.92 | 48.13 | |||
1:10 [LYS] | 0:778 [C] | 3.73 | 0:1836 [A] | 48.13 | ||
1:10 [LYS] | 0:779 [U] | 3.19 | 0:776 [A] | 48.13 | ||
1:10 [LYS] | 0:861 [A] | 4.42 | 0:785 [U] | 48.13 | ||
1:10 [LYS] | 0:1695 [G] | 3.63 | 0:1686 [C] | 48.13 | ||
1:10 [LYS] | 0:1696 [U] | 3.96 | 0:1682 [A] | 48.13 | ||
1:11 [LYS] | 0:470 [U] | 4.87 | 36.48 | |||
1:11 [LYS] | 0:777 [U] | 3.14 | 36.48 | |||
1:11 [LYS] | 0:778 [C] | 3.7 | 0:1836 [A] | 36.48 | ||
1:11 [LYS] | 0:881 [C] | 2.91 | base:SC | 36.48 | ||
1:11 [LYS] | 0:1687 [C] | 3.59 | 0:1694 [G] | 36.48 | ||
1:12 [ASN] | 0:777 [U] | 3.24 | base:BB | 35.87 | ||
1:12 [ASN] | 0:862 [U] | 3.83 | 0:784 [A] | 35.87 | ||
1:12 [ASN] | 0:1413 [A] | 4.3 | 35.87 | |||
1:12 [ASN] | 0:1414 [A] | 2.56 | 0:1681 [G] | base:SC, sugar:BB | 35.87 | |
1:12 [ASN] | 0:1415 [G] | 3.16 | 0:1680 [C] | 35.87 | ||
1:12 [ASN] | 0:1686 [C] | 4.82 | 0:1695 [G] | 35.87 | ||
1:12 [ASN] | 0:1696 [U] | 4.92 | 0:1682 [A] | 35.87 | ||
1:13 [THR] | 0:777 [U] | 2.86 | base:BB | 5.93 | ||
1:13 [THR] | 0:778 [C] | 4.79 | 0:1836 [A] | 5.93 | ||
1:13 [THR] | 0:863 [G] | 3.97 | 0:783 [C] | 5.93 | ||
1:13 [THR] | 0:1414 [A] | 4.6 | 0:1681 [G] | 5.93 | ||
1:13 [THR] | 0:1415 [G] | 4.6 | 0:1680 [C] | 5.93 | ||
1:14 [THR] | 0:120 [A] | 4.27 | 16.09 | |||
1:14 [THR] | 0:1414 [A] | 4.89 | 0:1681 [G] | 16.09 | ||
1:14 [THR] | 0:1415 [G] | 2.79 | 0:1680 [C] | 16.09 | ||
1:14 [THR] | 0:1416 [G] | 4.71 | 0:1679 [C] | 16.09 | ||
1:15 [THR] | 0:470 [U] | 3.42 | sugar:SC | 50.24 | ||
1:15 [THR] | 0:776 [A] | 4.1 | 0:779 [U] | 50.24 | ||
1:15 [THR] | 0:777 [U] | 3.03 | 50.24 | |||
1:16 [HIS] | 0:470 [U] | 2.7 | 91.54 | |||
1:16 [HIS] | 0:471 [G] | 3.12 | 91.54 | |||
1:16 [HIS] | 0:774 [C] | 4.6 | 0:887 [G] | 91.54 | ||
1:16 [HIS] | 0:775 [G] | 2.86 | 91.54 | |||
1:17 [THR] | 0:120 [A] | 3.12 | 53.24 | |||
1:18 [LYS] | 0:52 [A] | 3.97 | 0:109 [U] | 18.52 | ||
1:18 [LYS] | 0:53 [C] | 4.56 | 0:66 [G] | 18.52 | ||
1:18 [LYS] | 0:120 [A] | 2.81 | sugar:BB | 18.52 | ||
1:18 [LYS] | 0:121 [U] | 2.93 | 18.52 | |||
1:19 [CYS] | 0:51 [G] | 4.79 | 0:110 [C] | 81.89 | ||
1:19 [CYS] | 0:120 [A] | 4.28 | 81.89 | |||
1:19 [CYS] | 0:121 [U] | 3.08 | 81.89 | |||
1:20 [ARG] | 0:50 [G] | 4.47 | 0:111 [C] | 76.84 | ||
1:20 [ARG] | 0:51 [G] | 4.9 | 0:110 [C] | 76.84 | ||
1:20 [ARG] | 0:111 [C] | 2.67 | 0:50 [G] | 76.84 | ||
1:20 [ARG] | 0:112 [G] | 2.86 | 0:49 [A] | 76.84 | ||
1:20 [ARG] | 0:119 [A] | 3.31 | base/AA stacks | 76.84 | ||
1:20 [ARG] | 0:120 [A] | 3.24 | 76.84 | |||
1:20 [ARG] | 0:121 [U] | 3.5 | 76.84 | |||
1:21 [ARG] | 0:50 [G] | 2.96 | 0:111 [C] | base:BB | 86.31 | |
1:21 [ARG] | 0:51 [G] | 4.14 | 0:110 [C] | 86.31 | ||
1:21 [ARG] | 0:111 [C] | 4.2 | 0:50 [G] | 86.31 | ||
1:21 [ARG] | 0:112 [G] | 3.66 | 0:49 [A] | 86.31 | ||
1:21 [ARG] | 0:113 [A] | 2.92 | 0:47 [G] | 86.31 | ||
1:22 [CYS] | 0:51 [G] | 3.41 | 0:110 [C] | 89.43 | ||
1:23 [GLY] | 0:51 [G] | 3.24 | 0:110 [C] | 96.6 | ||
1:23 [GLY] | 0:52 [A] | 4.51 | 0:109 [U] | 96.6 | ||
1:23 [GLY] | 0:121 [U] | 3.8 | 96.6 | |||
1:25 [LYS] | 0:470 [U] | 3.45 | 59.41 | |||
1:25 [LYS] | 0:471 [G] | 2.84 | 59.41 | |||
1:26 [SER] | 0:471 [G] | 3.66 | 89.14 | |||
1:26 [SER] | 0:472 [A] | 2.69 | 0:469 [G] | 89.14 | ||
1:27 [TYR] | 0:120 [A] | 2.98 | 51.77 | |||
1:28 [HIS] | 0:775 [G] | 3.88 | 92.69 | |||
1:28 [HIS] | 0:776 [A] | 2.85 | 0:779 [U] | 92.69 | ||
1:29 [THR] | 0:120 [A] | 2.56 | base:SC | 0.0 | ||
1:30 [LYS] | 0:862 [U] | 4.84 | 0:784 [A] | 57.36 | ||
1:30 [LYS] | 0:863 [G] | 2.59 | 0:783 [C] | 57.36 | ||
1:30 [LYS] | 0:864 [U] | 2.84 | 0:782 [G] | 57.36 | ||
1:31 [LYS] | 0:775 [G] | 4.05 | 61.53 | |||
1:31 [LYS] | 0:776 [A] | 2.89 | 0:779 [U] | 61.53 | ||
1:32 [LYS] | 0:119 [A] | 4.45 | 51.53 | |||
1:32 [LYS] | 0:120 [A] | 2.53 | 51.53 | |||
1:33 [VAL] | 0:775 [G] | 4.92 | 19.13 | |||
1:34 [CYS] | 0:774 [C] | 4.85 | 0:887 [G] | 99.0 | ||
1:35 [SER] | 0:471 [G] | 2.82 | sugar:SC | 76.77 | ||
1:35 [SER] | 0:472 [A] | 3.26 | 0:469 [G] | 76.77 | ||
1:35 [SER] | 0:774 [C] | 3.14 | 0:887 [G] | 76.77 | ||
1:35 [SER] | 0:775 [G] | 3.44 | 76.77 | |||
1:36 [SER] | 0:472 [A] | 3.62 | 0:469 [G] | 70.18 | ||
1:36 [SER] | 0:473 [A] | 4.65 | 0:468 [U] | 70.18 | ||
1:39 [PHE] | 0:112 [G] | 3.81 | 0:49 [A] | 65.74 | ||
1:39 [PHE] | 0:113 [A] | 3.64 | 0:47 [G] | 65.74 | ||
1:40 [GLY] | 0:1463 [A] | 4.9 | 0:1480 [U] | 88.23 | ||
1:41 [LYS] | 0:774 [C] | 4.87 | 0:887 [G] | 49.47 | ||
1:41 [LYS] | 0:1473 [U] | 3.22 | base:SC | 49.47 | ||
1:41 [LYS] | 0:1474 [C] | 3.88 | 0:1468 [G] | 49.47 | ||
1:42 [SER] | 0:1473 [U] | 2.87 | 80.61 | |||
1:43 [ALA] | 0:113 [A] | 3.33 | 0:47 [G] | 49.16 | ||
1:43 [ALA] | 0:114 [A] | 4.0 | 0:48 [A] | 49.16 | ||
1:43 [ALA] | 0:148 [A] | 3.84 | 0:43 [U] | 49.16 | ||
1:43 [ALA] | 0:1473 [U] | 4.98 | 49.16 | |||
1:44 [LYS] | 0:148 [A] | 3.07 | 0:43 [U] | 64.24 | ||
1:44 [LYS] | 0:149 [G] | 3.7 | 0:42 [C] | 64.24 | ||
1:44 [LYS] | 0:181 [G] | 4.42 | 0:155 [C] | 64.24 | ||
1:44 [LYS] | 0:182 [G] | 3.1 | 0:154 [C] | 64.24 | ||
1:44 [LYS] | 0:1473 [U] | 3.97 | 64.24 | |||
1:45 [ARG] | 0:49 [A] | 3.97 | 0:112 [G] | 30.51 | ||
1:45 [ARG] | 0:50 [G] | 4.0 | 0:111 [C] | 30.51 | ||
1:45 [ARG] | 0:112 [G] | 4.47 | 0:49 [A] | 30.51 | ||
1:45 [ARG] | 0:148 [A] | 4.02 | 0:43 [U] | 30.51 | ||
1:45 [ARG] | 0:149 [G] | 2.88 | 0:42 [C] | 30.51 | ||
1:45 [ARG] | 0:1473 [U] | 4.32 | 30.51 | |||
1:46 [ARG] | 0:472 [A] | 2.92 | 0:469 [G] | sugar:SC | 85.16 | |
1:46 [ARG] | 0:473 [A] | 3.18 | 0:468 [U] | 85.16 | ||
1:46 [ARG] | 0:773 [A] | 2.84 | 0:888 [U] | sugar:SC | 85.16 | |
1:46 [ARG] | 0:774 [C] | 3.07 | 0:887 [G] | 85.16 | ||
1:47 [ASP] | 0:150 [G] | 4.85 | 29.37 | |||
1:47 [ASP] | 0:179 [C] | 4.51 | 0:157 [G] | 29.37 | ||
1:48 [TYR] | 0:179 [C] | 3.25 | 0:157 [G] | 43.5 | ||
1:48 [TYR] | 0:180 [G] | 4.55 | 0:156 [C] | 43.5 | ||
1:48 [TYR] | 0:772 [G] | 3.42 | 0:889 [C] | 43.5 | ||
1:48 [TYR] | 0:773 [A] | 3.43 | 0:888 [U] | 43.5 | ||
1:48 [TYR] | 0:1473 [U] | 4.66 | 43.5 | |||
1:49 [GLU] | 0:152 [A] | 4.42 | 0:185 [G] | 49.35 | ||
1:49 [GLU] | 0:178 [U] | 3.6 | 0:158 [A] | 49.35 | ||
1:49 [GLU] | 0:179 [C] | 2.64 | 0:157 [G] | 49.35 | ||
1:50 [TRP] | 0:178 [U] | 3.76 | 0:158 [A] | 55.13 | ||
1:50 [TRP] | 0:179 [C] | 4.41 | 0:157 [G] | 55.13 | ||
1:50 [TRP] | 0:472 [A] | 3.96 | 0:469 [G] | 55.13 | ||
1:50 [TRP] | 0:473 [A] | 4.31 | 0:468 [U] | 55.13 | ||
1:50 [TRP] | 0:771 [G] | 3.86 | 0:890 [C] | 55.13 | ||
1:50 [TRP] | 0:772 [G] | 2.92 | 0:889 [C] | sugar:SC | 55.13 | |
1:50 [TRP] | 0:773 [A] | 3.4 | 0:888 [U] | 55.13 | ||
1:50 [TRP] | 0:890 [C] | 2.49 | 0:771 [G] | sugar:BB | 55.13 | |
1:50 [TRP] | 0:891 [G] | 3.1 | 0:770 [C] | sugar:BB | 55.13 | |
1:51 [GLN] | 0:472 [A] | 4.74 | 0:469 [G] | 27.58 | ||
1:51 [GLN] | 0:473 [A] | 2.64 | 0:468 [U] | 27.58 | ||
1:51 [GLN] | 0:890 [C] | 4.11 | 0:771 [G] | 27.58 | ||
1:52 [SER] | 0:178 [U] | 4.8 | 0:158 [A] | 28.91 | ||
1:52 [SER] | 0:890 [C] | 4.91 | 0:771 [G] | 28.91 | ||
1:52 [SER] | 0:891 [G] | 3.84 | 0:770 [C] | 28.91 | ||
1:52 [SER] | 0:892 [G] | 4.92 | 0:769 [C] | 28.91 | ||
1:53 [LYS] | 0:891 [G] | 3.5 | 0:770 [C] | 72.03 | ||
1:53 [LYS] | 0:892 [G] | 2.84 | 0:769 [C] | 72.03 | ||
1:53 [LYS] | 0:893 [C] | 3.54 | 0:768 [U] | 72.03 | ||
1:53 [LYS] | 0:894 [A] | 2.78 | 72.03 | |||
1:54 [ALA] | 0:177 [A] | 3.81 | 0:159 [G] | 51.89 | ||
1:54 [ALA] | 0:178 [U] | 3.78 | 0:158 [A] | 51.89 | ||
1:54 [ALA] | 0:891 [G] | 3.77 | 0:770 [C] | 51.89 | ||
1:54 [ALA] | 0:892 [G] | 2.9 | 0:769 [C] | 51.89 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group55 | 1VQ8_1_0 | 1: 50s ribosomal protein l37e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) | P32410 | Rubredoxin-related | Archaeal large subunit ribosomal RNA | ✔ |
Interologs
Total number of interologs for this interface: 3
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
1VQ8_1_0 | 1YHQ_1_0 | 0.99 | 1.0 | 0.16 | 0.98 | Rubredoxin-related | Archaeal large subunit ribosomal RNA | compare |
1VQ8_1_0 | 7O7Y_Bj_B5 | 0.81 | 0.94 | 1.94 | 0.31 | Rubredoxin-related | compare | |
1VQ8_1_0 | 6AZ3_j_1,2 | 0.79 | 0.78 | 2.17 | 0.29 | Rubredoxin-related | compare |