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All interfaces > All interologs > Interface groups > group55 > 1VQ8_1_0 vs 7O7Y_Bj_B5

Interface analysis


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Licorice
Surface

RNA

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Licorice
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Common contacts -

1VQ8_1
1VQ8_0
7O7Y_Bj
7O7Y_B5
Conserved?
1:4 [GLY] 0:845 [U] Bj:4 [GLY] B5:1556 [A] ✔
1:4 [GLY] 0:882 [A] Bj:4 [GLY] B5:1593 [A] ✔
1:4 [GLY] 0:1837 [G] Bj:4 [GLY] B5:3375 [A] ✔
1:10 [LYS] 0:777 [U] Bj:10 [LYS] B5:1489 [A2M] ✔
1:10 [LYS] 0:778 [C] Bj:10 [LYS] B5:1490 [C] ✔
1:10 [LYS] 0:779 [U] Bj:10 [LYS] B5:1491 [PSU] ✔
1:10 [LYS] 0:1695 [G] Bj:10 [LYS] B5:2643 [G] ✔
1:10 [LYS] 0:1696 [U] Bj:10 [LYS] B5:2644 [U] ✔
1:9 [GLY] 0:1687 [C] Bj:9 [GLY] B5:2635 [C] ✔
1:9 [GLY] 0:1694 [G] Bj:9 [GLY] B5:2642 [G] ✔
1:9 [GLY] 0:1695 [G] Bj:9 [GLY] B5:2643 [G] ✔
1:9 [GLY] 0:1696 [U] Bj:9 [GLY] B5:2644 [U] ✔
1:45 [ARG] 0:148 [A] Bj:44 [LYS] B5:21 [G] ✔
1:45 [ARG] 0:149 [G] Bj:44 [LYS] B5:22 [G] ✔
1:26 [SER] 0:471 [G] Bj:26 [ALA] B5:371 [A] ✔
1:26 [SER] 0:472 [A] Bj:26 [ALA] B5:372 [A] ✔
1:51 [GLN] 0:473 [A] Bj:50 [SER] B5:373 [G] ✔
1:51 [GLN] 0:890 [C] Bj:50 [SER] B5:1601 [A] ✔
1:50 [TRP] 0:178 [U] Bj:49 [TRP] B5:51 [A] ✔
1:50 [TRP] 0:179 [C] Bj:49 [TRP] B5:52 [G] ✔
1:50 [TRP] 0:472 [A] Bj:49 [TRP] B5:372 [A] ✔
1:50 [TRP] 0:473 [A] Bj:49 [TRP] B5:373 [G] ✔
1:50 [TRP] 0:772 [G] Bj:49 [TRP] B5:1484 [G] ✔
1:50 [TRP] 0:773 [A] Bj:49 [TRP] B5:1485 [G] ✔
1:50 [TRP] 0:890 [C] Bj:49 [TRP] B5:1601 [A] ✔
1:50 [TRP] 0:891 [G] Bj:49 [TRP] B5:1602 [U] ✔
1:7 [SER] 0:778 [C] Bj:7 [SER] B5:1490 [C] ✔
1:7 [SER] 0:1695 [G] Bj:7 [SER] B5:2643 [G] ✔
1:7 [SER] 0:1836 [A] Bj:7 [SER] B5:3374 [A] ✔
1:16 [HIS] 0:470 [U] Bj:16 [HIS] B5:370 [U] ✔
1:16 [HIS] 0:471 [G] Bj:16 [HIS] B5:371 [A] ✔
1:16 [HIS] 0:774 [C] Bj:16 [HIS] B5:1486 [U] ✔
1:16 [HIS] 0:775 [G] Bj:16 [HIS] B5:1487 [G] ✔
1:44 [LYS] 0:148 [A] Bj:43 [ARG] B5:21 [G] ✔
1:44 [LYS] 0:149 [G] Bj:43 [ARG] B5:22 [G] ✔
1:44 [LYS] 0:181 [G] Bj:43 [ARG] B5:54 [G] ✔
1:44 [LYS] 0:182 [G] Bj:43 [ARG] B5:55 [G] ✔
1:44 [LYS] 0:1473 [U] Bj:43 [ARG] B5:2306 [G] ✔
1:35 [SER] 0:471 [G] Bj:35 [GLY] B5:371 [A] ✔
1:35 [SER] 0:472 [A] Bj:35 [GLY] B5:372 [A] ✔
1:35 [SER] 0:774 [C] Bj:35 [GLY] B5:1486 [U] ✔
1:35 [SER] 0:775 [G] Bj:35 [GLY] B5:1487 [G] ✔
1:31 [LYS] 0:775 [G] Bj:31 [LYS] B5:1487 [G] ✔
1:11 [LYS] 0:470 [U] Bj:11 [ARG] B5:370 [U] ✔
1:11 [LYS] 0:777 [U] Bj:11 [ARG] B5:1489 [A2M] ✔
1:11 [LYS] 0:778 [C] Bj:11 [ARG] B5:1490 [C] ✔
1:11 [LYS] 0:881 [C] Bj:11 [ARG] B5:1592 [A] ✔
1:11 [LYS] 0:1687 [C] Bj:11 [ARG] B5:2635 [C] ✔
1:3 [ALA] 0:778 [C] Bj:3 [LYS] B5:1490 [C] ✔
1:3 [ALA] 0:882 [A] Bj:3 [LYS] B5:1593 [A] ✔
1:3 [ALA] 0:883 [U] Bj:3 [LYS] B5:1594 [U] ✔
1:3 [ALA] 0:1836 [A] Bj:3 [LYS] B5:3374 [A] ✔
1:3 [ALA] 0:1837 [G] Bj:3 [LYS] B5:3375 [A] ✔
1:33 [VAL] 0:775 [G] Bj:33 [THR] B5:1487 [G] ✔
1:36 [SER] 0:472 [A] Bj:36 [LYS] B5:372 [A] ✔
1:36 [SER] 0:473 [A] Bj:36 [LYS] B5:373 [G] ✔
1:48 [TYR] 0:179 [C] Bj:47 [TYR] B5:52 [G] ✔
1:48 [TYR] 0:180 [G] Bj:47 [TYR] B5:53 [C] ✔
1:48 [TYR] 0:772 [G] Bj:47 [TYR] B5:1484 [G] ✔
1:48 [TYR] 0:773 [A] Bj:47 [TYR] B5:1485 [G] ✔
1:28 [HIS] 0:775 [G] Bj:28 [HIS] B5:1487 [G] ✔
1:28 [HIS] 0:776 [A] Bj:28 [HIS] B5:1488 [A] ✔
1:43 [ALA] 0:148 [A] Bj:42 [LYS] B5:21 [G] ✔
1:43 [ALA] 0:1473 [U] Bj:42 [LYS] B5:2306 [G] ✔
1:34 [CYS] 0:774 [C] Bj:34 [CYS] B5:1486 [U] ✔
1:47 [ASP] 0:150 [G] Bj:46 [LYS] B5:23 [C] ✔
1:47 [ASP] 0:179 [C] Bj:46 [LYS] B5:52 [G] ✔
1:8 [GLN] 0:882 [A] Bj:8 [PHE] B5:1593 [A] ✔
1:8 [GLN] 0:1687 [C] Bj:8 [PHE] B5:2635 [C] ✔
1:8 [GLN] 0:1688 [G] Bj:8 [PHE] B5:2636 [G] ✔
1:8 [GLN] 0:1694 [G] Bj:8 [PHE] B5:2642 [G] ✔
1:6 [PRO] 0:845 [U] Bj:6 [SER] B5:1556 [A] ✔
1:6 [PRO] 0:846 [A] Bj:6 [SER] B5:1557 [U] ✔
1:6 [PRO] 0:1694 [G] Bj:6 [SER] B5:2642 [G] ✔
1:6 [PRO] 0:1695 [G] Bj:6 [SER] B5:2643 [G] ✔
1:12 [ASN] 0:777 [U] Bj:12 [ARG] B5:1489 [A2M] ✔
1:12 [ASN] 0:862 [U] Bj:12 [ARG] B5:1573 [G] ✔
1:12 [ASN] 0:1413 [A] Bj:12 [ARG] B5:2246 [A] ✔
1:12 [ASN] 0:1414 [A] Bj:12 [ARG] B5:2247 [A] ✔
1:12 [ASN] 0:1415 [G] Bj:12 [ARG] B5:2248 [G] ✔
1:12 [ASN] 0:1696 [U] Bj:12 [ARG] B5:2644 [U] ✔
1:5 [THR] 0:843 [A] Bj:5 [THR] B5:1554 [A] ✔
1:5 [THR] 0:844 [A] Bj:5 [THR] B5:1555 [A] ✔
1:5 [THR] 0:845 [U] Bj:5 [THR] B5:1556 [A] ✔
1:5 [THR] 0:882 [A] Bj:5 [THR] B5:1593 [A] ✔
1:5 [THR] 0:1688 [G] Bj:5 [THR] B5:2636 [G] ✔
1:5 [THR] 0:1694 [G] Bj:5 [THR] B5:2642 [G] ✔
1:2 [GLY] 0:845 [U] Bj:2 [THR] B5:1556 [A] ✔
1:2 [GLY] 0:846 [A] Bj:2 [THR] B5:1557 [U] ✔
1:2 [GLY] 0:1836 [A] Bj:2 [THR] B5:3374 [A] ✔
1:2 [GLY] 0:1837 [G] Bj:2 [THR] B5:3375 [A] ✔
1:13 [THR] 0:777 [U] Bj:13 [ASN] B5:1489 [A2M] ✔
1:13 [THR] 0:778 [C] Bj:13 [ASN] B5:1490 [C] ✔
1:13 [THR] 0:863 [G] Bj:13 [ASN] B5:1574 [G] ✔
1:13 [THR] 0:1414 [A] Bj:13 [ASN] B5:2247 [A] ✔
1:13 [THR] 0:1415 [G] Bj:13 [ASN] B5:2248 [G] ✔
1:30 [LYS] 0:864 [U] Bj:30 [GLN] B5:1575 [U] ✔
1:46 [ARG] 0:472 [A] Bj:45 [ARG] B5:372 [A] ✔
1:46 [ARG] 0:473 [A] Bj:45 [ARG] B5:373 [G] ✔
1:46 [ARG] 0:773 [A] Bj:45 [ARG] B5:1485 [G] ✔
1:46 [ARG] 0:774 [C] Bj:45 [ARG] B5:1486 [U] ✔
1:25 [LYS] 0:470 [U] Bj:25 [LYS] B5:370 [U] ✔
1:25 [LYS] 0:471 [G] Bj:25 [LYS] B5:371 [A] ✔
1:49 [GLU] 0:178 [U] Bj:48 [ASN] B5:51 [A] ✔
1:49 [GLU] 0:179 [C] Bj:48 [ASN] B5:52 [G] ✔
1:14 [THR] 0:1415 [G] Bj:14 [LYS] B5:2248 [G] ✔
1:14 [THR] 0:1416 [G] Bj:14 [LYS] B5:2249 [G] ✔
1:15 [THR] 0:470 [U] Bj:15 [THR] B5:370 [U] ✔
1:15 [THR] 0:776 [A] Bj:15 [THR] B5:1488 [A] ✔
1:15 [THR] 0:777 [U] Bj:15 [THR] B5:1489 [A2M] ✔
1:10 [LYS] 0:861 [A] Bj:10 [LYS] B5:1572 [G] ❌ 7O7Y_Bj_B5
1:45 [ARG] 0:1473 [U] Bj:44 [LYS] B5:2306 [G] ❌ 7O7Y_Bj_B5
1:51 [GLN] 0:472 [A] Bj:50 [SER] B5:372 [A] ❌ 7O7Y_Bj_B5
1:7 [SER] 0:779 [U] Bj:7 [SER] B5:1491 [PSU] ❌ 7O7Y_Bj_B5
1:31 [LYS] 0:776 [A] Bj:31 [LYS] B5:1488 [A] ❌ 7O7Y_Bj_B5
1:48 [TYR] 0:1473 [U] Bj:47 [TYR] B5:2306 [G] ❌ 7O7Y_Bj_B5
1:53 [LYS] 0:891 [G] Bj:52 [LYS] B5:1602 [U] ❌ 7O7Y_Bj_B5
1:12 [ASN] 0:1686 [C] Bj:12 [ARG] B5:2634 [C] ❌ 7O7Y_Bj_B5
1:5 [THR] 0:1695 [G] Bj:5 [THR] B5:2643 [G] ❌ 7O7Y_Bj_B5
1:30 [LYS] 0:862 [U] Bj:30 [GLN] B5:1573 [G] ❌ 7O7Y_Bj_B5
1:30 [LYS] 0:863 [G] Bj:30 [GLN] B5:1574 [G] ❌ 7O7Y_Bj_B5
1:49 [GLU] 0:152 [A] Bj:48 [ASN] B5:25 [A] ❌ 7O7Y_Bj_B5
1:14 [THR] 0:1414 [A] Bj:14 [LYS] B5:2247 [A] ❌ 7O7Y_Bj_B5
1:10 [LYS] 0:862 [U] Bj:10 [LYS] B5:1573 [G] ❌ 1VQ8_1_0
1:12 [ASN] 0:861 [A] Bj:12 [ARG] B5:1572 [G] ❌ 1VQ8_1_0
1:13 [THR] 0:862 [U] Bj:13 [ASN] B5:1573 [G] ❌ 1VQ8_1_0
1:14 [THR] 0:777 [U] Bj:14 [LYS] B5:1489 [A2M] ❌ 1VQ8_1_0
1:15 [THR] 0:881 [C] Bj:15 [THR] B5:1592 [A] ❌ 1VQ8_1_0
1:15 [THR] 0:775 [G] Bj:15 [THR] B5:1487 [G] ❌ 1VQ8_1_0
1:25 [LYS] 0:777 [U] Bj:25 [LYS] B5:1489 [A2M] ❌ 1VQ8_1_0
1:26 [SER] 0:775 [G] Bj:26 [ALA] B5:1487 [G] ❌ 1VQ8_1_0
1:30 [LYS] 0:777 [U] Bj:30 [GLN] B5:1489 [A2M] ❌ 1VQ8_1_0
1:31 [LYS] 0:774 [C] Bj:31 [LYS] B5:1486 [U] ❌ 1VQ8_1_0
1:43 [ALA] 0:149 [G] Bj:42 [LYS] B5:22 [G] ❌ 1VQ8_1_0
1:45 [ARG] 0:150 [G] Bj:44 [LYS] B5:23 [C] ❌ 1VQ8_1_0
1:47 [ASP] 0:180 [G] Bj:46 [LYS] B5:53 [C] ❌ 1VQ8_1_0
1:5 [THR] 0:1837 [G] Bj:5 [THR] B5:3375 [A] ❌ 1VQ8_1_0
1:5 [THR] 0:1687 [C] Bj:5 [THR] B5:2635 [C] ❌ 1VQ8_1_0
1:9 [GLY] 0:1686 [C] Bj:9 [GLY] B5:2634 [C] ❌ 1VQ8_1_0
1:50 [TRP] 0:771 [G] Bj:49 [TRP] B5:1483 [U] ❌ 7O7Y_B5:1483 no longer at interface
1:40 [GLY] 0:1463 [A] Bj:40 [PRO] B5:2296 [A] ❌ 7O7Y_Bj:40, 7O7Y_B5:2296 no longer at interface
1:53 [LYS] 0:892 [G] Bj:52 [LYS] B5:1603 [C] ❌ 7O7Y_B5:1603 no longer at interface
1:53 [LYS] 0:893 [C] Bj:52 [LYS] B5:1604 [U] ❌ 7O7Y_B5:1604 no longer at interface
1:53 [LYS] 0:894 [A] Bj:52 [LYS] B5:1605 [A] ❌ 7O7Y_B5:1605 no longer at interface
1:52 [SER] 0:892 [G] Bj:51 [ALA] B5:1603 [C] ❌ 7O7Y_Bj:51, 7O7Y_B5:1603 no longer at interface
1:12 [ASN] 0:1697 [G] Bj:12 [ARG] B5:2645 [C] ❌ 1VQ8_0:1697 no longer at interface
1:3 [ALA] 0:879 [C] Bj:3 [LYS] B5:1590 [C] ❌ 1VQ8_0:879 no longer at interface
1:30 [LYS] 0:865 [G] Bj:30 [GLN] B5:1576 [A] ❌ 1VQ8_0:865 no longer at interface
1:44 [LYS] 0:1472 [C] Bj:43 [ARG] B5:2305 [C] ❌ 1VQ8_0:1472 no longer at interface
1:47 [ASP] 0:151 [A] Bj:46 [LYS] B5:24 [G] ❌ 1VQ8_0:151 no longer at interface
1:50 [TRP] 0:889 [C] Bj:49 [TRP] B5:1600 [C] ❌ 1VQ8_0:889 no longer at interface
1:51 [GLN] 0:474 [C] Bj:50 [SER] B5:374 [G] ❌ 1VQ8_0:474 no longer at interface
1:53 [LYS] 0:475 [G] Bj:52 [LYS] B5:375 [G] ❌ 1VQ8_0:475 no longer at interface
1:53 [LYS] 0:474 [C] Bj:52 [LYS] B5:374 [G] ❌ 1VQ8_0:474 no longer at interface
1:53 [LYS] 0:464 [G] Bj:52 [LYS] B5:364 [G] ❌ 1VQ8_0:464 no longer at interface
1:52 [SER] 0:178 [U] Bj:51 [ALA] B5:51 [A] ❌ 7O7Y_Bj:51 no longer at interface
1:52 [SER] 0:890 [C] Bj:51 [ALA] B5:1601 [A] ❌ 7O7Y_Bj:51 no longer at interface
1:52 [SER] 0:891 [G] Bj:51 [ALA] B5:1602 [U] ❌ 7O7Y_Bj:51 no longer at interface
1:42 [SER] 0:1473 [U] Bj:41 [ALA] B5:2306 [G] ❌ 7O7Y_Bj:41 no longer at interface
1:24 [GLU] 0:472 [A] Bj:24 [SER] B5:372 [A] ❌ 1VQ8_1:24 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rubredoxin-related 0.94 1.94 0.31 0.81 0.94 0.71 0.73 0.81 0.71 0.34 0.42


Other pairs involving 1VQ8_1_0 or 7O7Y_Bj_B5

Total number of entries: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_1_0 1YHQ_1_0 0.99 1.0 0.16 0.98 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1VQ8_1_0 6AZ3_j_1,2 0.79 0.78 2.17 0.29 Rubredoxin-related compare
1VQ8_1_0 7O7Y_Bj_B5 0.81 0.94 1.94 0.31 Rubredoxin-related compare
1YHQ_1_0 7O7Y_Bj_B5 0.80 0.94 1.94 0.31 Rubredoxin-related compare
6AZ3_j_1,2 7O7Y_Bj_B5 0.76 0.92 0.94 0.44 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare