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All interfaces > All interologs > Interface groups > group55 > 7O7Y_Bj_B5

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_Bj
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Bj:2 [THR] B5:1556 [A] 3.32 sugar:BB 57.12
Bj:2 [THR] B5:1557 [U] 3.81 B5:1548 [A] 57.12
Bj:2 [THR] B5:3374 [A] 3.2 B5:1490 [C] base:SC, sugar:BB 57.12
Bj:2 [THR] B5:3375 [A] 3.53 base:BB 57.12
Bj:3 [LYS] B5:1490 [C] 4.87 B5:3374 [A] 77.43
Bj:3 [LYS] B5:1590 [C] 4.49 B5:1582 [G] 77.43
Bj:3 [LYS] B5:1593 [A] 3.53 77.43
Bj:3 [LYS] B5:1594 [U] 3.4 77.43
Bj:3 [LYS] B5:3374 [A] 3.31 B5:1490 [C] sugar:BB 77.43
Bj:3 [LYS] B5:3375 [A] 3.08 sugar:SC 77.43
Bj:4 [GLY] B5:1556 [A] 3.26 95.55
Bj:4 [GLY] B5:1593 [A] 3.58 95.55
Bj:4 [GLY] B5:3375 [A] 3.48 95.55
Bj:5 [THR] B5:1554 [A] 3.81 B5:1549 [C] 93.1
Bj:5 [THR] B5:1555 [A] 4.52 93.1
Bj:5 [THR] B5:1556 [A] 2.44 93.1
Bj:5 [THR] B5:1593 [A] 3.67 base:SC 93.1
Bj:5 [THR] B5:2635 [C] 4.99 B5:2642 [G] 93.1
Bj:5 [THR] B5:2636 [G] 3.27 sugar:SC 93.1
Bj:5 [THR] B5:2642 [G] 2.79 B5:2635 [C] base:BB 93.1
Bj:5 [THR] B5:3375 [A] 4.88 93.1
Bj:6 [SER] B5:1556 [A] 4.98 55.73
Bj:6 [SER] B5:1557 [U] 4.02 B5:1548 [A] 55.73
Bj:6 [SER] B5:2642 [G] 3.54 B5:2635 [C] sugar:SC 55.73
Bj:6 [SER] B5:2643 [G] 2.99 B5:2634 [C] sugar:BB 55.73
Bj:7 [SER] B5:1490 [C] 3.17 B5:3374 [A] sugar:SC 89.71
Bj:7 [SER] B5:2643 [G] 4.89 B5:2634 [C] 89.71
Bj:7 [SER] B5:3374 [A] 3.19 B5:1490 [C] 89.71
Bj:8 [PHE] B5:1593 [A] 3.24 4.83
Bj:8 [PHE] B5:2635 [C] 2.57 B5:2642 [G] sugar:BB 4.83
Bj:8 [PHE] B5:2636 [G] 3.37 4.83
Bj:8 [PHE] B5:2642 [G] 4.21 B5:2635 [C] 4.83
Bj:9 [GLY] B5:2634 [C] 4.98 B5:2643 [G] 93.07
Bj:9 [GLY] B5:2635 [C] 3.14 B5:2642 [G] 93.07
Bj:9 [GLY] B5:2642 [G] 3.41 B5:2635 [C] 93.07
Bj:9 [GLY] B5:2643 [G] 3.06 B5:2634 [C] base:BB 93.07
Bj:9 [GLY] B5:2644 [U] 3.47 B5:2630 [A2M] 93.07
Bj:10 [LYS] B5:1489 [A2M] 4.8 66.72
Bj:10 [LYS] B5:1490 [C] 3.81 B5:3374 [A] 66.72
Bj:10 [LYS] B5:1491 [PSU] 2.72 B5:1488 [A] 66.72
Bj:10 [LYS] B5:1573 [G] 4.98 B5:1496 [C] 66.72
Bj:10 [LYS] B5:2643 [G] 3.25 B5:2634 [C] 66.72
Bj:10 [LYS] B5:2644 [U] 3.97 B5:2630 [A2M] 66.72
Bj:11 [ARG] B5:370 [U] 4.43 66.89
Bj:11 [ARG] B5:1489 [A2M] 3.24 66.89
Bj:11 [ARG] B5:1490 [C] 3.52 B5:3374 [A] sugar:SC 66.89
Bj:11 [ARG] B5:1592 [A] 4.03 66.89
Bj:11 [ARG] B5:2635 [C] 3.74 B5:2642 [G] 66.89
Bj:12 [ARG] B5:1489 [A2M] 3.87 62.65
Bj:12 [ARG] B5:1572 [G] 2.84 B5:1497 [U] 62.65
Bj:12 [ARG] B5:1573 [G] 3.74 B5:1496 [C] 62.65
Bj:12 [ARG] B5:2246 [A] 4.26 62.65
Bj:12 [ARG] B5:2247 [A] 2.7 B5:2629 [C] sugar:BB, sugar:SC 62.65
Bj:12 [ARG] B5:2248 [G] 3.15 B5:2628 [C] 62.65
Bj:12 [ARG] B5:2644 [U] 3.51 B5:2630 [A2M] sugar:SC 62.65
Bj:12 [ARG] B5:2645 [C] 3.55 B5:2245 [G] sugar:SC 62.65
Bj:13 [ASN] B5:1489 [A2M] 2.84 sugar:BB 58.16
Bj:13 [ASN] B5:1490 [C] 4.7 B5:3374 [A] 58.16
Bj:13 [ASN] B5:1573 [G] 2.74 B5:1496 [C] 58.16
Bj:13 [ASN] B5:1574 [G] 4.38 B5:1495 [C] 58.16
Bj:13 [ASN] B5:2247 [A] 3.9 B5:2629 [C] 58.16
Bj:13 [ASN] B5:2248 [G] 5.0 B5:2628 [C] 58.16
Bj:14 [LYS] B5:1489 [A2M] 4.0 54.9
Bj:14 [LYS] B5:2248 [G] 3.61 B5:2628 [C] 54.9
Bj:14 [LYS] B5:2249 [G] 2.55 B5:2627 [C] 54.9
Bj:15 [THR] B5:370 [U] 3.93 73.28
Bj:15 [THR] B5:1487 [G] 4.04 73.28
Bj:15 [THR] B5:1488 [A] 3.18 B5:1491 [PSU] 73.28
Bj:15 [THR] B5:1489 [A2M] 2.99 73.28
Bj:15 [THR] B5:1592 [A] 3.27 base:SC 73.28
Bj:16 [HIS] B5:370 [U] 2.7 sugar:SC 99.0
Bj:16 [HIS] B5:371 [A] 3.07 99.0
Bj:16 [HIS] B5:1486 [U] 4.37 B5:1598 [A] 99.0
Bj:16 [HIS] B5:1487 [G] 2.63 99.0
Bj:24 [SER] B5:372 [A] 4.43 B5:369 [G] 58.36
Bj:25 [LYS] B5:370 [U] 2.8 50.18
Bj:25 [LYS] B5:371 [A] 3.14 50.18
Bj:25 [LYS] B5:1489 [A2M] 3.88 50.18
Bj:26 [ALA] B5:371 [A] 3.38 84.13
Bj:26 [ALA] B5:372 [A] 3.55 B5:369 [G] 84.13
Bj:26 [ALA] B5:1487 [G] 4.36 84.13
Bj:28 [HIS] B5:1487 [G] 3.56 85.45
Bj:28 [HIS] B5:1488 [A] 2.64 B5:1491 [PSU] 85.45
Bj:30 [GLN] B5:1489 [A2M] 3.79 63.9
Bj:30 [GLN] B5:1575 [U] 3.28 B5:1494 [G] 63.9
Bj:30 [GLN] B5:1576 [A] 2.92 B5:1493 [U] 63.9
Bj:31 [LYS] B5:1486 [U] 4.87 B5:1598 [A] 61.87
Bj:31 [LYS] B5:1487 [G] 2.52 61.87
Bj:33 [THR] B5:1487 [G] 4.88 37.23
Bj:34 [CYS] B5:1486 [U] 4.87 B5:1598 [A] 86.65
Bj:35 [GLY] B5:371 [A] 4.8 71.21
Bj:35 [GLY] B5:372 [A] 3.36 B5:369 [G] 71.21
Bj:35 [GLY] B5:1486 [U] 3.69 B5:1598 [A] 71.21
Bj:35 [GLY] B5:1487 [G] 4.3 71.21
Bj:36 [LYS] B5:372 [A] 3.14 B5:369 [G] 62.97
Bj:36 [LYS] B5:373 [G] 2.63 B5:368 [C] 62.97
Bj:42 [LYS] B5:21 [G] 3.62 54.09
Bj:42 [LYS] B5:22 [G] 4.72 54.09
Bj:42 [LYS] B5:2306 [G] 4.41 B5:2301 [C] 54.09
Bj:43 [ARG] B5:21 [G] 3.39 53.45
Bj:43 [ARG] B5:22 [G] 3.31 53.45
Bj:43 [ARG] B5:54 [G] 3.02 B5:28 [C] 53.45
Bj:43 [ARG] B5:55 [G] 2.9 B5:27 [C] 53.45
Bj:43 [ARG] B5:2305 [C] 3.47 53.45
Bj:43 [ARG] B5:2306 [G] 4.57 B5:2301 [C] 53.45
Bj:44 [LYS] B5:21 [G] 3.95 15.07
Bj:44 [LYS] B5:22 [G] 2.42 15.07
Bj:44 [LYS] B5:23 [C] 2.94 15.07
Bj:45 [ARG] B5:372 [A] 3.01 B5:369 [G] sugar:SC 76.25
Bj:45 [ARG] B5:373 [G] 3.31 B5:368 [C] 76.25
Bj:45 [ARG] B5:1485 [G] 2.88 B5:1599 [C] sugar:SC 76.25
Bj:45 [ARG] B5:1486 [U] 3.59 B5:1598 [A] 76.25
Bj:46 [LYS] B5:23 [C] 2.92 4.85
Bj:46 [LYS] B5:24 [G] 2.8 B5:56 [A] base:SC 4.85
Bj:46 [LYS] B5:52 [G] 4.76 B5:30 [C] 4.85
Bj:46 [LYS] B5:53 [C] 4.19 B5:29 [G] 4.85
Bj:47 [TYR] B5:52 [G] 3.3 B5:30 [C] 42.12
Bj:47 [TYR] B5:53 [C] 4.08 B5:29 [G] 42.12
Bj:47 [TYR] B5:1484 [G] 3.43 B5:1600 [C] 42.12
Bj:47 [TYR] B5:1485 [G] 3.11 B5:1599 [C] 42.12
Bj:48 [ASN] B5:51 [A] 3.89 B5:31 [U] 57.12
Bj:48 [ASN] B5:52 [G] 2.52 B5:30 [C] 57.12
Bj:49 [TRP] B5:51 [A] 3.63 B5:31 [U] 52.87
Bj:49 [TRP] B5:52 [G] 3.81 B5:30 [C] 52.87
Bj:49 [TRP] B5:372 [A] 3.96 B5:369 [G] 52.87
Bj:49 [TRP] B5:373 [G] 4.4 B5:368 [C] 52.87
Bj:49 [TRP] B5:1484 [G] 2.87 B5:1600 [C] sugar:SC 52.87
Bj:49 [TRP] B5:1485 [G] 3.58 B5:1599 [C] 52.87
Bj:49 [TRP] B5:1600 [C] 4.94 B5:1484 [G] 52.87
Bj:49 [TRP] B5:1601 [A] 2.35 B5:1483 [U] sugar:BB 52.87
Bj:49 [TRP] B5:1602 [U] 2.88 B5:1482 [A] sugar:BB 52.87
Bj:50 [SER] B5:373 [G] 3.81 B5:368 [C] 48.25
Bj:50 [SER] B5:374 [G] 4.4 B5:367 [C] 48.25
Bj:50 [SER] B5:1601 [A] 3.66 B5:1483 [U] 48.25
Bj:52 [LYS] B5:364 [G] 3.4 75.39
Bj:52 [LYS] B5:374 [G] 3.54 B5:367 [C] 75.39
Bj:52 [LYS] B5:375 [G] 2.74 B5:366 [A] 75.39
Bj:53 [ALA] B5:373 [G] 3.34 B5:368 [C] 60.38
Bj:53 [ALA] B5:374 [G] 4.65 B5:367 [C] 60.38
Bj:54 [LYS] B5:25 [A] 4.92 B5:58 [G] 2.43
Bj:55 [ARG] B5:358 [C] 3.61 base/AA stacks 54.31
Bj:55 [ARG] B5:364 [G] 2.41 base:SC, base:SC 54.31
Bj:56 [ARG] B5:364 [G] 4.06 70.35
Bj:56 [ARG] B5:373 [G] 4.5 B5:368 [C] 70.35
Bj:56 [ARG] B5:374 [G] 2.8 B5:367 [C] 70.35
Bj:56 [ARG] B5:375 [G] 2.74 B5:366 [A] base:SC, base:SC 70.35
Bj:57 [ASN] B5:23 [C] 4.75 50.63
Bj:58 [THR] B5:23 [C] 3.38 76.76
Bj:58 [THR] B5:24 [G] 2.92 B5:56 [A] 76.76
Bj:59 [THR] B5:22 [G] 3.69 59.86
Bj:59 [THR] B5:23 [C] 3.28 59.86
Bj:71 [TYR] B5:342 [G] 3.33 B8:32 [C] 6.71
Bj:71 [TYR] B5:343 [C] 3.7 B8:31 [G] 6.71
Bj:75 [ARG] B5:343 [C] 3.36 B8:31 [G] sugar:SC 59.96
Bj:75 [ARG] B5:344 [A] 4.33 B8:30 [U] 59.96
Bj:76 [HIS] B5:191 [G] 4.22 B5:250 [C] 64.69
Bj:80 [GLU] B5:134 [G] 3.39 43.09
Bj:81 [GLY] B5:134 [G] 3.37 70.36
Bj:85 [LYS] B5:250 [C] 2.96 B5:191 [G] 1.96
Bj:85 [LYS] B5:251 [C] 3.74 B5:190 [G] 1.96

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group55 7O7Y_Bj_B5 Bj: Ribosomal protein l37, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) U3KPD5 Rubredoxin-related Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_j_1,2 7O7Y_Bj_B5 0.76 0.92 0.94 0.44 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare
1VQ8_1_0 7O7Y_Bj_B5 0.81 0.94 1.94 0.31 Rubredoxin-related compare
1YHQ_1_0 7O7Y_Bj_B5 0.80 0.94 1.94 0.31 Rubredoxin-related compare