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All interfaces > All interologs > Interface groups > group84 > 4Y4O_1b_1a

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1b
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1b:22 [LYS] 1a:830 [G] 3.64 1a:856 [C] 51.2
1b:22 [LYS] 1a:831 [U] 4.49 1a:855 [G] 51.2
1b:22 [LYS] 1a:848 [C] 3.83 1a:838 [G] 51.2
1b:22 [LYS] 1a:849 [C] 3.17 1a:837 [G] 51.2
1b:24 [TRP] 1a:829 [G] 3.45 1a:857 [C] 59.07
1b:24 [TRP] 1a:830 [G] 3.99 1a:856 [C] 59.07
1b:26 [PRO] 1a:828 [A] 3.41 1a:858 [G] 84.65
1b:26 [PRO] 1a:829 [G] 3.56 1a:857 [C] 84.65
1b:27 [LYS] 1a:859 [A] 4.49 63.65
1b:96 [ARG] 1a:1100 [C] 3.15 base/AA stacks 82.61
1b:96 [ARG] 1a:1101 [A] 3.19 82.61
1b:96 [ARG] 1a:1102 [A] 3.48 1a:1073 [U] 82.61
1b:96 [ARG] 1a:1103 [C] 2.55 1a:1072 [G] 82.61
1b:97 [TRP] 1a:1101 [A] 4.24 89.76
1b:98 [LEU] 1a:1102 [A] 4.45 1a:1073 [U] 61.66
1b:98 [LEU] 1a:1103 [C] 4.47 1a:1072 [G] 61.66
1b:99 [GLY] 1a:1101 [A] 3.53 89.1
1b:99 [GLY] 1a:1102 [A] 3.38 1a:1073 [U] sugar:BB 89.1
1b:99 [GLY] 1a:1103 [C] 4.86 1a:1072 [G] 89.1
1b:100 [GLY] 1a:1074 [G] 4.07 1a:1083 [U] 98.9
1b:100 [GLY] 1a:1101 [A] 3.32 98.9
1b:103 [THR] 1a:1074 [G] 2.67 1a:1083 [U] sugar:SC 98.9
1b:103 [THR] 1a:1075 [C] 4.15 1a:1082 [G] 98.9
1b:103 [THR] 1a:1101 [A] 2.86 base:SC 98.9
1b:104 [ASN] 1a:1073 [U] 2.37 1a:1102 [A] base:SC, sugar:SC 99.0
1b:104 [ASN] 1a:1074 [G] 3.2 1a:1083 [U] 99.0
1b:104 [ASN] 1a:1102 [A] 4.43 1a:1073 [U] 99.0
1b:104 [ASN] 1a:1103 [C] 4.35 1a:1072 [G] 99.0
1b:107 [THR] 1a:1072 [G] 3.84 1a:1103 [C] 73.9
1b:107 [THR] 1a:1073 [U] 3.71 1a:1102 [A] 73.9
1b:107 [THR] 1a:1103 [C] 3.5 1a:1072 [G] 73.9
1b:108 [ILE] 1a:1103 [C] 3.7 1a:1072 [G] 76.03
1b:110 [GLN] 1a:1104 [G] 4.64 1a:1071 [C] 47.1
1b:111 [ARG] 1a:1103 [C] 3.58 1a:1072 [G] 79.72
1b:111 [ARG] 1a:1104 [G] 3.03 1a:1071 [C] 79.72
1b:111 [ARG] 1a:1105 [A] 4.96 1a:1070 [U] 79.72
1b:133 [LYS] 1a:1158 [C] 3.12 sugar:SC 78.26
1b:133 [LYS] 1a:1159 [U] 3.84 78.26
1b:133 [LYS] 1a:1160 [G] 2.72 1a:1176 [A] 78.26
1b:140 [HIS] 1a:1097 [C] 4.4 1a:1088 [G] 66.74
1b:140 [HIS] 1a:1098 [C] 3.32 1a:1087 [G] 66.74
1b:144 [ARG] 1a:1098 [C] 3.49 1a:1087 [G] 73.6
1b:144 [ARG] 1a:1099 [G] 2.69 1a:1086 [U] 73.6
1b:147 [LYS] 1a:1099 [G] 3.47 1a:1086 [U] 57.05
1b:148 [TYR] 1a:1099 [G] 3.41 1a:1086 [U] 18.27
1b:172 [ILE] 1a:1101 [A] 3.54 58.35
1b:175 [ARG] 1a:1076 [C] 4.74 1a:1081 [G] 45.83
1b:175 [ARG] 1a:1101 [A] 4.94 45.83
1b:176 [GLU] 1a:1101 [A] 3.03 98.97
1b:179 [LYS] 1a:1074 [G] 4.88 1a:1083 [U] 44.21
1b:179 [LYS] 1a:1075 [C] 2.43 1a:1082 [G] 44.21
1b:179 [LYS] 1a:1076 [C] 3.86 1a:1081 [G] 44.21

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group84 4Y4O_1b_1a 1b: 30s ribosomal protein s2, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) P80371 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1b_1a 7RYG_b_a 0.63 0.92 1.92 0.58 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
4Y4O_1b_1a 6S0X_b_a 0.63 0.95 1.78 0.67 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
4Y4O_1b_1a 7O7Y_AZ_A2 0.70 0.91 1.35 0.24 Ribosomal protein S2/SIS domain compare
4Y4O_1b_1a 7K00_B_A 0.80 0.98 1.1 0.62 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare