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All interfaces > All interologs > Interface groups > group84 > 6S0X_b_a

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

6S0X_b
6S0X_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
b:20 [THR] a:838 [G] 4.65 a:865 [C] 58.41
b:21 [ARG] a:838 [G] 2.68 a:865 [C] 67.07
b:21 [ARG] a:839 [U] 3.04 a:864 [G] 67.07
b:23 [TRP] a:837 [A] 4.89 a:866 [U] 58.88
b:25 [PRO] a:836 [A] 3.54 a:867 [G] 89.76
b:95 [ARG] a:1111 [C] 3.25 85.44
b:95 [ARG] a:1112 [A] 3.39 85.44
b:95 [ARG] a:1113 [A] 4.04 a:1084 [U] 85.44
b:96 [TRP] a:1112 [A] 4.36 90.87
b:97 [LEU] a:1112 [A] 3.69 60.9
b:97 [LEU] a:1113 [A] 3.25 a:1084 [U] sugar:BB 60.9
b:98 [GLY] a:1085 [G] 3.54 a:1094 [U] 87.11
b:98 [GLY] a:1112 [A] 3.32 87.11
b:98 [GLY] a:1113 [A] 4.06 a:1084 [U] 87.11
b:99 [GLY] a:1085 [G] 3.53 a:1094 [U] 98.92
b:99 [GLY] a:1112 [A] 4.39 98.92
b:102 [THR] a:1085 [G] 3.24 a:1094 [U] 98.95
b:102 [THR] a:1086 [U] 3.28 a:1093 [A] 98.95
b:103 [ASN] a:1084 [U] 2.78 a:1113 [A] base:SC, sugar:SC, sugar:SC 99.0
b:103 [ASN] a:1085 [G] 3.08 a:1094 [U] 99.0
b:105 [LYS] a:1084 [U] 4.61 a:1113 [A] 40.19
b:106 [THR] a:1083 [G] 4.72 a:1114 [C] 76.93
b:106 [THR] a:1084 [U] 3.28 a:1113 [A] 76.93
b:106 [THR] a:1114 [C] 4.22 a:1083 [G] 76.93
b:107 [ILE] a:1113 [A] 4.77 a:1084 [U] 79.2
b:107 [ILE] a:1114 [C] 3.7 a:1083 [G] 79.2
b:110 [ARG] a:1114 [C] 3.37 a:1083 [G] 79.11
b:110 [ARG] a:1115 [G] 4.58 a:1082 [C] 79.11
b:113 [ARG] a:1114 [C] 4.09 a:1083 [G] 51.24
b:113 [ARG] a:1115 [G] 3.35 a:1082 [C] 51.24
b:136 [GLU] a:1107 [C] 4.91 a:1100 [G] 0.0
b:136 [GLU] a:1108 [C] 3.9 a:1099 [G] 0.0
b:139 [LYS] a:1108 [C] 3.28 a:1099 [G] 73.08
b:139 [LYS] a:1109 [C] 3.59 a:1098 [G] 73.08
b:143 [ARG] a:1114 [C] 3.24 a:1083 [G] 75.28
b:171 [ASN] a:1112 [A] 3.03 base:SC 50.05
b:178 [LYS] a:1085 [G] 4.89 a:1094 [U] 52.59
b:178 [LYS] a:1086 [U] 2.94 a:1093 [A] 52.59
b:178 [LYS] a:1087 [C] 3.11 a:1092 [G] 52.59

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group84 6S0X_b_a b: 30s ribosomal protein s2, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) A0A2X2M020 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1b_1a 6S0X_b_a 0.63 0.95 1.78 0.67 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
6S0X_b_a 7K00_B_A 0.66 0.96 1.29 0.62 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
6S0X_b_a 7O7Y_AZ_A2 0.60 0.88 2.46 0.19 Ribosomal protein S2/SIS domain compare
6S0X_b_a 7RYG_b_a 0.60 0.97 1.98 0.63 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare