Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
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InterfaceRNA
Protein
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Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
6S0X_b
|
6S0X_a
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
b:20 [THR] | a:838 [G] | 4.65 | a:865 [C] | 58.41 | ||
b:21 [ARG] | a:838 [G] | 2.68 | a:865 [C] | 67.07 | ||
b:21 [ARG] | a:839 [U] | 3.04 | a:864 [G] | 67.07 | ||
b:23 [TRP] | a:837 [A] | 4.89 | a:866 [U] | 58.88 | ||
b:25 [PRO] | a:836 [A] | 3.54 | a:867 [G] | 89.76 | ||
b:95 [ARG] | a:1111 [C] | 3.25 | 85.44 | |||
b:95 [ARG] | a:1112 [A] | 3.39 | 85.44 | |||
b:95 [ARG] | a:1113 [A] | 4.04 | a:1084 [U] | 85.44 | ||
b:96 [TRP] | a:1112 [A] | 4.36 | 90.87 | |||
b:97 [LEU] | a:1112 [A] | 3.69 | 60.9 | |||
b:97 [LEU] | a:1113 [A] | 3.25 | a:1084 [U] | sugar:BB | 60.9 | |
b:98 [GLY] | a:1085 [G] | 3.54 | a:1094 [U] | 87.11 | ||
b:98 [GLY] | a:1112 [A] | 3.32 | 87.11 | |||
b:98 [GLY] | a:1113 [A] | 4.06 | a:1084 [U] | 87.11 | ||
b:99 [GLY] | a:1085 [G] | 3.53 | a:1094 [U] | 98.92 | ||
b:99 [GLY] | a:1112 [A] | 4.39 | 98.92 | |||
b:102 [THR] | a:1085 [G] | 3.24 | a:1094 [U] | 98.95 | ||
b:102 [THR] | a:1086 [U] | 3.28 | a:1093 [A] | 98.95 | ||
b:103 [ASN] | a:1084 [U] | 2.78 | a:1113 [A] | base:SC, sugar:SC, sugar:SC | 99.0 | |
b:103 [ASN] | a:1085 [G] | 3.08 | a:1094 [U] | 99.0 | ||
b:105 [LYS] | a:1084 [U] | 4.61 | a:1113 [A] | 40.19 | ||
b:106 [THR] | a:1083 [G] | 4.72 | a:1114 [C] | 76.93 | ||
b:106 [THR] | a:1084 [U] | 3.28 | a:1113 [A] | 76.93 | ||
b:106 [THR] | a:1114 [C] | 4.22 | a:1083 [G] | 76.93 | ||
b:107 [ILE] | a:1113 [A] | 4.77 | a:1084 [U] | 79.2 | ||
b:107 [ILE] | a:1114 [C] | 3.7 | a:1083 [G] | 79.2 | ||
b:110 [ARG] | a:1114 [C] | 3.37 | a:1083 [G] | 79.11 | ||
b:110 [ARG] | a:1115 [G] | 4.58 | a:1082 [C] | 79.11 | ||
b:113 [ARG] | a:1114 [C] | 4.09 | a:1083 [G] | 51.24 | ||
b:113 [ARG] | a:1115 [G] | 3.35 | a:1082 [C] | 51.24 | ||
b:136 [GLU] | a:1107 [C] | 4.91 | a:1100 [G] | 0.0 | ||
b:136 [GLU] | a:1108 [C] | 3.9 | a:1099 [G] | 0.0 | ||
b:139 [LYS] | a:1108 [C] | 3.28 | a:1099 [G] | 73.08 | ||
b:139 [LYS] | a:1109 [C] | 3.59 | a:1098 [G] | 73.08 | ||
b:143 [ARG] | a:1114 [C] | 3.24 | a:1083 [G] | 75.28 | ||
b:171 [ASN] | a:1112 [A] | 3.03 | base:SC | 50.05 | ||
b:178 [LYS] | a:1085 [G] | 4.89 | a:1094 [U] | 52.59 | ||
b:178 [LYS] | a:1086 [U] | 2.94 | a:1093 [A] | 52.59 | ||
b:178 [LYS] | a:1087 [C] | 3.11 | a:1092 [G] | 52.59 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group84 | 6S0X_b_a | b: 30s ribosomal protein s2, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) | A0A2X2M020 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | ✔ |
Interologs
Total number of interologs for this interface: 4
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6S0X_b_a | 7K00_B_A | 0.66 | 0.96 | 1.29 | 0.62 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |
4Y4O_1b_1a | 6S0X_b_a | 0.63 | 0.95 | 1.78 | 0.67 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |
6S0X_b_a | 7RYG_b_a | 0.60 | 0.97 | 1.98 | 0.63 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |
6S0X_b_a | 7O7Y_AZ_A2 | 0.60 | 0.88 | 2.46 | 0.19 | Ribosomal protein S2/SIS domain | compare |