Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
7K00_B
|
7K00_A
|
7O7Y_AZ
|
7O7Y_A2
|
Conserved?
|
---|---|---|---|---|
B:171 [ILE] | A:1101 [A] | AZ:132 [GLN] | A2:1379 [A] | ✔ |
B:25 [PRO] | A:828 [U] | AZ:32 [PHE] | A2:1097 [G] | ✔ |
B:25 [PRO] | A:829 [G] | AZ:32 [PHE] | A2:1098 [G] | ✔ |
B:175 [GLU] | A:1101 [A] | AZ:136 [GLU] | A2:1379 [A] | ✔ |
B:98 [GLY] | A:1101 [A] | AZ:105 [PRO] | A2:1379 [A] | ✔ |
B:98 [GLY] | A:1102 [A] | AZ:105 [PRO] | A2:1380 [A] | ✔ |
B:98 [GLY] | A:1103 [C] | AZ:105 [PRO] | A2:1381 [C] | ✔ |
B:99 [GLY] | A:1074 [G] | AZ:106 [GLY] | A2:1352 [G] | ✔ |
B:99 [GLY] | A:1101 [A] | AZ:106 [GLY] | A2:1379 [A] | ✔ |
B:103 [ASN] | A:1073 [U] | AZ:110 [ASN] | A2:1351 [U] | ✔ |
B:103 [ASN] | A:1074 [G] | AZ:110 [ASN] | A2:1352 [G] | ✔ |
B:103 [ASN] | A:1102 [A] | AZ:110 [ASN] | A2:1380 [A] | ✔ |
B:103 [ASN] | A:1103 [C] | AZ:110 [ASN] | A2:1381 [C] | ✔ |
B:178 [ASN] | A:1075 [U] | AZ:139 [TYR] | A2:1353 [G] | ✔ |
B:105 [LYS] | A:1073 [U] | AZ:112 [ILE] | A2:1351 [U] | ✔ |
B:96 [TRP] | A:1101 [A] | AZ:103 [PHE] | A2:1379 [A] | ✔ |
B:97 [LEU] | A:1102 [A] | AZ:104 [THR] | A2:1380 [A] | ✔ |
B:97 [LEU] | A:1103 [C] | AZ:104 [THR] | A2:1381 [C] | ✔ |
B:102 [THR] | A:1074 [G] | AZ:109 [THR] | A2:1352 [G] | ✔ |
B:102 [THR] | A:1075 [U] | AZ:109 [THR] | A2:1353 [G] | ✔ |
B:102 [THR] | A:1101 [A] | AZ:109 [THR] | A2:1379 [A] | ✔ |
B:107 [VAL] | A:1103 [C] | AZ:113 [GLN] | A2:1381 [C] | ✔ |
B:95 [ARG] | A:1100 [C] | AZ:102 [ARG] | A2:1378 [U] | ✔ |
B:95 [ARG] | A:1101 [A] | AZ:102 [ARG] | A2:1379 [A] | ✔ |
B:95 [ARG] | A:1102 [A] | AZ:102 [ARG] | A2:1380 [A] | ✔ |
B:95 [ARG] | A:1103 [C] | AZ:102 [ARG] | A2:1381 [C] | ✔ |
B:23 [TRP] | A:830 [G] | AZ:30 [LEU] | A2:1099 [C] | ✔ |
B:98 [GLY] | A:1074 [G] | AZ:105 [PRO] | A2:1352 [G] | ❌ 7O7Y_AZ_A2 |
B:103 [ASN] | A:1072 [G] | AZ:110 [ASN] | A2:1350 [G] | ❌ 7O7Y_AZ_A2 |
B:105 [LYS] | A:1074 [G] | AZ:112 [ILE] | A2:1352 [G] | ❌ 7O7Y_AZ_A2 |
B:23 [TRP] | A:829 [G] | AZ:30 [LEU] | A2:1098 [G] | ❌ 7O7Y_AZ_A2 |
B:105 [LYS] | A:1103 [C] | AZ:112 [ILE] | A2:1381 [C] | ❌ 7K00_B_A |
B:105 [LYS] | A:1072 [G] | AZ:112 [ILE] | A2:1350 [G] | ❌ 7K00_B_A |
B:107 [VAL] | A:1102 [A] | AZ:113 [GLN] | A2:1380 [A] | ❌ 7K00_B_A |
B:178 [ASN] | A:1076 [U] | AZ:139 [TYR] | A2:1354 [A] | ❌ 7K00_B_A |
B:25 [PRO] | A:830 [G] | AZ:32 [PHE] | A2:1099 [C] | ❌ 7K00_B_A |
B:194 [ASP] | A:860 [A] | AZ:155 [ARG] | A2:1140 [C] | ❌ 7K00_B:194, 7K00_A:860 no longer at interface |
B:20 [THR] | A:830 [G] | AZ:29 [ASN] | A2:1099 [C] | ❌ 7O7Y_AZ:29 no longer at interface |
B:174 [LYS] | A:1075 [U] | AZ:135 [THR] | A2:1353 [G] | ❌ 7O7Y_AZ:135 no longer at interface |
B:174 [LYS] | A:1076 [U] | AZ:135 [THR] | A2:1354 [A] | ❌ 7O7Y_AZ:135 no longer at interface |
B:37 [LYS] | A:847 [G] | AZ:45 [GLY] | A2:1126 [C] | ❌ 7O7Y_AZ:45 no longer at interface |
B:37 [LYS] | A:848 [C] | AZ:45 [GLY] | A2:1127 [G] | ❌ 7O7Y_AZ:45 no longer at interface |
B:26 [LYS] | A:859 [G] | AZ:33 [GLN] | A2:1138 [U] | ❌ 7O7Y_AZ:33 no longer at interface |
B:104 [TRP] | A:1074 [G] | AZ:111 [GLN] | A2:1352 [G] | ❌ 7K00_B:104 no longer at interface |
B:104 [TRP] | A:1073 [U] | AZ:111 [GLN] | A2:1351 [U] | ❌ 7K00_B:104 no longer at interface |
B:170 [HIS] | A:1101 [A] | AZ:131 [HIS] | A2:1379 [A] | ❌ 7K00_B:170 no longer at interface |
B:194 [ASP] | A:859 [G] | AZ:155 [ARG] | A2:1138 [U] | ❌ 7K00_B:194 no longer at interface |
B:24 [ASN] | A:830 [G] | AZ:31 [ASP] | A2:1099 [C] | ❌ 7K00_B:24 no longer at interface |
B:34 [ALA] | A:848 [C] | AZ:41 [ARG] | A2:1127 [G] | ❌ 7K00_B:34 no longer at interface |
B:34 [ALA] | A:847 [G] | AZ:41 [ARG] | A2:1126 [C] | ❌ 7K00_B:34 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribosomal protein S2/SIS domain | 0.9 | 1.99 | 0.24 | 0.7 | 0.92 | 0.67 | 0.83 | 0.74 | 0.70 | 0.31 | 0.61 |
Other pairs involving 7K00_B_A or 7O7Y_AZ_A2
Total number of entries: 6
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
4Y4O_1b_1a | 7K00_B_A | 0.80 | 0.98 | 1.1 | 0.62 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |
4Y4O_1b_1a | 7O7Y_AZ_A2 | 0.70 | 0.91 | 1.35 | 0.24 | Ribosomal protein S2/SIS domain | compare | |
7K00_B_A | 7O7Y_AZ_A2 | 0.74 | 0.9 | 1.99 | 0.24 | Ribosomal protein S2/SIS domain | compare | |
7K00_B_A | 7RYG_b_a | 0.73 | 0.94 | 1.57 | 0.78 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |
6S0X_b_a | 7O7Y_AZ_A2 | 0.60 | 0.88 | 2.46 | 0.19 | Ribosomal protein S2/SIS domain | compare | |
6S0X_b_a | 7K00_B_A | 0.66 | 0.96 | 1.29 | 0.62 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |