RNAprotDB

All interfaces > All interologs > Interface groups > group84 > 7K00_B_A vs 7RYG_b_a

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

7K00_B
7K00_A
7RYG_b
7RYG_a
Conserved?
B:20 [THR] A:830 [G] b:22 [THR] a:827 [C] ✔
B:171 [ILE] A:1101 [A] b:173 [ILE] a:1098 [A] ✔
B:25 [PRO] A:828 [U] b:27 [PRO] a:825 [A] ✔
B:25 [PRO] A:829 [G] b:27 [PRO] a:826 [G] ✔
B:175 [GLU] A:1101 [A] b:177 [GLU] a:1098 [A] ✔
B:106 [THR] A:1072 [G] b:108 [THR] a:1069 [G] ✔
B:106 [THR] A:1073 [U] b:108 [THR] a:1070 [U] ✔
B:106 [THR] A:1103 [C] b:108 [THR] a:1100 [C] ✔
B:139 [ARG] A:1097 [C] b:141 [ARG] a:1094 [C] ✔
B:139 [ARG] A:1098 [C] b:141 [ARG] a:1095 [C] ✔
B:139 [ARG] A:1169 [A] b:141 [ARG] a:1166 [A] ✔
B:98 [GLY] A:1101 [A] b:100 [GLY] a:1098 [A] ✔
B:98 [GLY] A:1102 [A] b:100 [GLY] a:1099 [A] ✔
B:99 [GLY] A:1101 [A] b:101 [GLY] a:1098 [A] ✔
B:132 [LYS] A:1158 [C] b:134 [ARG] a:1155 [C] ✔
B:103 [ASN] A:1073 [U] b:105 [ASN] a:1070 [U] ✔
B:103 [ASN] A:1074 [G] b:105 [ASN] a:1071 [G] ✔
B:178 [ASN] A:1075 [U] b:180 [ASN] a:1072 [U] ✔
B:105 [LYS] A:1073 [U] b:107 [LYS] a:1070 [U] ✔
B:21 [ARG] A:830 [G] b:23 [ARG] a:827 [C] ✔
B:21 [ARG] A:831 [A] b:23 [ARG] a:828 [C] ✔
B:21 [ARG] A:832 [G] b:23 [ARG] a:829 [G] ✔
B:97 [LEU] A:1102 [A] b:99 [LEU] a:1099 [A] ✔
B:97 [LEU] A:1103 [C] b:99 [LEU] a:1100 [C] ✔
B:102 [THR] A:1074 [G] b:104 [THR] a:1071 [G] ✔
B:102 [THR] A:1075 [U] b:104 [THR] a:1072 [U] ✔
B:102 [THR] A:1101 [A] b:104 [THR] a:1098 [A] ✔
B:95 [ARG] A:1100 [C] b:97 [ARG] a:1097 [C] ✔
B:23 [TRP] A:829 [G] b:25 [TRP] a:826 [G] ✔
B:23 [TRP] A:830 [G] b:25 [TRP] a:827 [C] ✔
B:98 [GLY] A:1074 [G] b:100 [GLY] a:1071 [G] ❌ 7RYG_b_a
B:98 [GLY] A:1103 [C] b:100 [GLY] a:1100 [C] ❌ 7RYG_b_a
B:99 [GLY] A:1074 [G] b:101 [GLY] a:1071 [G] ❌ 7RYG_b_a
B:103 [ASN] A:1072 [G] b:105 [ASN] a:1069 [G] ❌ 7RYG_b_a
B:103 [ASN] A:1102 [A] b:105 [ASN] a:1099 [A] ❌ 7RYG_b_a
B:103 [ASN] A:1103 [C] b:105 [ASN] a:1100 [C] ❌ 7RYG_b_a
B:105 [LYS] A:1074 [G] b:107 [LYS] a:1071 [G] ❌ 7RYG_b_a
B:95 [ARG] A:1101 [A] b:97 [ARG] a:1098 [A] ❌ 7RYG_b_a
B:95 [ARG] A:1102 [A] b:97 [ARG] a:1099 [A] ❌ 7RYG_b_a
B:95 [ARG] A:1103 [C] b:97 [ARG] a:1100 [C] ❌ 7RYG_b_a
B:103 [ASN] A:1101 [A] b:105 [ASN] a:1098 [A] ❌ 7K00_B_A
B:110 [SER] A:1103 [C] b:112 [SER] a:1100 [C] ❌ 7K00_B_A
B:174 [LYS] A:1076 [U] b:176 [LYS] a:1073 [C] ❌ 7RYG_b:176, 7RYG_a:1073 no longer at interface
B:37 [LYS] A:847 [G] b:39 [LYS] a:844 [G] ❌ 7RYG_b:39, 7RYG_a:844 no longer at interface
B:37 [LYS] A:848 [C] b:39 [LYS] a:845 [C] ❌ 7RYG_b:39, 7RYG_a:845 no longer at interface
B:26 [LYS] A:859 [G] b:28 [LYS] a:856 [C] ❌ 7RYG_b:28, 7RYG_a:856 no longer at interface
B:106 [THR] A:1104 [G] b:108 [THR] a:1101 [G] ❌ 7RYG_a:1101 no longer at interface
B:139 [ARG] A:1170 [A] b:141 [ARG] a:1167 [A] ❌ 7RYG_a:1167 no longer at interface
B:132 [LYS] A:1159 [U] b:134 [ARG] a:1156 [U] ❌ 7RYG_a:1156 no longer at interface
B:132 [LYS] A:1160 [G] b:134 [ARG] a:1157 [G] ❌ 7RYG_a:1157 no longer at interface
B:110 [SER] A:1104 [G] b:112 [SER] a:1101 [G] ❌ 7RYG_a:1101 no longer at interface
B:131 [LYS] A:1160 [G] b:133 [LYS] a:1157 [G] ❌ 7RYG_b:133, 7RYG_a:1157 no longer at interface
B:144 [LEU] A:1104 [G] b:146 [LEU] a:1101 [G] ❌ 7RYG_b:146, 7RYG_a:1101 no longer at interface
B:143 [LYS] A:1104 [G] b:145 [LYS] a:1101 [G] ❌ 7RYG_b:145, 7RYG_a:1101 no longer at interface
B:109 [GLN] A:1104 [G] b:111 [GLN] a:1101 [G] ❌ 7RYG_b:111, 7RYG_a:1101 no longer at interface
B:95 [ARG] A:1099 [G] b:97 [ARG] a:1096 [G] ❌ 7K00_A:1099 no longer at interface
B:174 [LYS] A:1075 [U] b:176 [LYS] a:1072 [U] ❌ 7RYG_b:176 no longer at interface
B:96 [TRP] A:1101 [A] b:98 [TRP] a:1098 [A] ❌ 7RYG_b:98 no longer at interface
B:107 [VAL] A:1103 [C] b:109 [LEU] a:1100 [C] ❌ 7RYG_b:109 no longer at interface
B:28 [LYS] A:828 [U] b:30 [ARG] a:825 [A] ❌ 7K00_B:28 no longer at interface
B:28 [LYS] A:829 [G] b:30 [ARG] a:826 [G] ❌ 7K00_B:28 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA 0.94 1.57 0.78 0.96 0.93 0.95 0.94 0.73 0.65 0.14 0.61


Other pairs involving 7K00_B_A or 7RYG_b_a

Total number of entries: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1b_1a 7K00_B_A 0.80 0.98 1.1 0.62 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
4Y4O_1b_1a 7RYG_b_a 0.63 0.92 1.92 0.58 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
7K00_B_A 7O7Y_AZ_A2 0.74 0.9 1.99 0.24 Ribosomal protein S2/SIS domain compare
7K00_B_A 7RYG_b_a 0.73 0.94 1.57 0.78 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
6S0X_b_a 7RYG_b_a 0.60 0.97 1.98 0.63 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
6S0X_b_a 7K00_B_A 0.66 0.96 1.29 0.62 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare