Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
3K49_A
|
3K49_B
|
5WZJ_A
|
5WZJ_B
|
Conserved?
|
---|---|---|---|---|
A:626 [ARG] | B:8 [A] | A:304 [LEU] | B:7 [A] | ✔ |
A:626 [ARG] | B:9 [U] | A:304 [LEU] | B:8 [C] | ✔ |
A:659 [ASN] | B:8 [A] | A:358 [SER] | B:7 [A] | ✔ |
A:587 [PHE] | B:10 [A] | A:220 [TYR] | B:9 [G] | ✔ |
A:550 [GLN] | B:10 [A] | A:174 [SER] | B:9 [G] | ✔ |
A:734 [TYR] | B:6 [A] | A:434 [GLY] | B:4 [U] | ✔ |
A:554 [ARG] | B:10 [A] | A:178 [GLU] | B:9 [G] | ✔ |
A:665 [GLN] | B:7 [A] | A:364 [GLU] | B:6 [G] | ✔ |
A:694 [SER] | B:7 [A] | A:394 [ARG] | B:6 [G] | ✔ |
A:590 [TYR] | B:9 [U] | A:223 [HIS] | B:8 [C] | ✔ |
A:590 [TYR] | B:10 [A] | A:223 [HIS] | B:9 [G] | ✔ |
A:662 [HIS] | B:7 [A] | A:361 [HIS] | B:6 [G] | ✔ |
A:662 [HIS] | B:8 [A] | A:361 [HIS] | B:7 [A] | ✔ |
A:701 [GLN] | B:6 [A] | A:401 [GLN] | B:4 [U] | ✔ |
A:698 [ARG] | B:6 [A] | A:398 [PHE] | B:4 [U] | ✔ |
A:698 [ARG] | B:7 [A] | A:398 [PHE] | B:6 [G] | ✔ |
A:622 [MET] | B:8 [A] | A:300 [GLN] | B:7 [A] | ✔ |
A:622 [MET] | B:9 [U] | A:300 [GLN] | B:8 [C] | ✔ |
A:695 [TYR] | B:7 [A] | A:395 [CYS] | B:6 [G] | ✔ |
A:593 [GLN] | B:9 [U] | A:226 [ARG] | B:8 [C] | ✔ |
A:625 [CYS] | B:8 [A] | A:303 [SER] | B:7 [A] | ✔ |
A:658 [GLN] | B:8 [A] | A:357 [ASN] | B:7 [A] | ✔ |
A:629 [GLN] | B:8 [A] | A:307 [GLN] | B:7 [A] | ✔ |
A:623 [TYR] | B:9 [U] | A:301 [TYR] | B:8 [C] | ✔ |
A:661 [ASN] | B:7 [A] | A:360 [SER] | B:6 [G] | ✔ |
A:697 [CYS] | B:6 [A] | A:397 [ASN] | B:4 [U] | ❌ 5WZJ_A_B |
A:733 [ASN] | B:5 [U] | A:433 [SER] | B:3 [U] | ❌ 5WZJ_A_B |
A:730 [GLN] | B:5 [U] | A:431 [GLY] | B:3 [U] | ❌ 5WZJ_A_B |
A:730 [GLN] | B:6 [A] | A:431 [GLY] | B:4 [U] | ❌ 5WZJ_A_B |
A:734 [TYR] | B:5 [U] | A:434 [GLY] | B:3 [U] | ❌ 5WZJ_A_B |
A:773 [PHE] | B:5 [U] | A:499 [HIS] | B:3 [U] | ❌ 5WZJ_A_B |
A:731 [TYR] | B:6 [A] | A:432 [LYS] | B:4 [U] | ❌ 5WZJ_A_B |
A:694 [SER] | B:6 [A] | A:394 [ARG] | B:4 [U] | ❌ 5WZJ_A_B |
A:695 [TYR] | B:8 [A] | A:395 [CYS] | B:7 [A] | ❌ 5WZJ_A_B |
A:776 [ASN] | B:5 [U] | A:503 [CYS] | B:3 [U] | ❌ 5WZJ_A_B |
A:623 [TYR] | B:10 [A] | A:301 [TYR] | B:9 [G] | ❌ 3K49_A_B |
A:658 [GLN] | B:7 [A] | A:357 [ASN] | B:6 [G] | ❌ 3K49_A_B |
A:557 [GLN] | B:10 [A] | A:181 [LEU] | B:9 [G] | ❌ 5WZJ_A:181 no longer at interface |
A:737 [GLN] | B:5 [U] | A:437 [ALA] | B:3 [U] | ❌ 5WZJ_A:437 no longer at interface |
A:589 [ASN] | B:9 [U] | A:222 [SER] | B:8 [C] | ❌ 5WZJ_A:222 no longer at interface |
A:586 [VAL] | B:9 [U] | A:219 [CYS] | B:8 [C] | ❌ 5WZJ_A:219 no longer at interface |
A:586 [VAL] | B:10 [A] | A:219 [CYS] | B:9 [G] | ❌ 5WZJ_A:219 no longer at interface |
A:772 [LYS] | B:5 [U] | A:479 [ASP] | B:3 [U] | ❌ 5WZJ_A:479 no longer at interface |
A:553 [SER] | B:10 [A] | A:177 [ALA] | B:9 [G] | ❌ 5WZJ_A:177 no longer at interface |
A:551 [HIS] | B:10 [A] | A:175 [HIS] | B:9 [G] | ❌ 3K49_A:551 no longer at interface |
A:591 [VAL] | B:10 [A] | A:224 [VAL] | B:9 [G] | ❌ 3K49_A:591 no longer at interface |
A:774 [ALA] | B:6 [A] | A:501 [MET] | B:4 [U] | ❌ 3K49_A:774 no longer at interface |
A:777 [VAL] | B:5 [U] | A:504 [LEU] | B:3 [U] | ❌ 3K49_A:777 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ARM repeat | 0.72 | 2.65 | 0.09 | 0.72 | 0.11 | 0.57 | 0.6 | 0.71 | 0.70 | 0.27 | 0.48 |
Other pairs involving 3K49_A_B or 5WZJ_A_B
Total number of entries: 9
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
3BSX_A_C | 3K49_A_B | 0.94 | 0.89 | 2.08 | 0.78 | ARM repeat | compare | |
3BSX_A_C | 5WZJ_A_B | 0.66 | 0.7 | 2.34 | 0.11 | ARM repeat | compare | |
3K49_A_B | 5WZJ_A_B | 0.71 | 0.72 | 2.65 | 0.09 | ARM repeat | compare | |
3K49_A_B | 3V74_A_B | 0.90 | 0.73 | 3.17 | 0.6 | ARM repeat | compare | |
3K49_A_B | 3V6Y_A_B | 0.80 | 0.73 | 3.21 | 0.5 | ARM repeat | compare | |
3K49_A_B | 5BZ1_A_B | 0.25 | 0.65 | 4.33 | 0.0 | ARM repeat | compare | |
3V6Y_A_B | 5WZJ_A_B | 0.85 | 0.64 | 3.34 | 0.09 | ARM repeat | compare | |
3V74_A_B | 5WZJ_A_B | 0.89 | 0.64 | 2.92 | 0.09 | ARM repeat | compare | |
5BZ1_A_B | 5WZJ_A_B | 0.81 | 0.65 | 3.05 | 0.07 | ARM repeat | compare |