RNAprotDB

All interfaces > All interologs > Interface groups > group95 > 3V6Y_A_B

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

3V6Y_A
3V6Y_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:201 [LYS] B:12 [A] 2.84 sugar:SC 94.28
A:201 [LYS] B:13 [C] 2.58 94.28
A:204 [CYS] B:12 [A] 4.52 95.59
A:205 [GLN] B:12 [A] 3.72 90.36
A:208 [GLU] B:12 [A] 2.61 base:SC, base:SC 96.97
A:241 [ILE] B:11 [U] 4.1 77.79
A:241 [ILE] B:12 [A] 4.34 77.79
A:241 [ILE] B:13 [C] 3.79 77.79
A:242 [PHE] B:12 [A] 3.71 89.58
A:242 [PHE] B:13 [C] 3.96 89.58
A:244 [ASN] B:11 [U] 2.78 base:SC, base:SC 98.48
A:245 [TYR] B:11 [U] 2.95 base/AA stacks 92.27
A:245 [TYR] B:12 [A] 3.26 base/AA stacks 92.27
A:248 [GLN] B:11 [U] 2.94 base:SC 98.63
A:284 [LYS] B:10 [A] 4.07 82.56
A:284 [LYS] B:11 [U] 4.8 82.56
A:285 [PHE] B:11 [U] 3.37 84.71
A:287 [CYS] B:10 [A] 3.78 87.7
A:288 [ARG] B:10 [A] 3.38 base/AA stacks 98.66
A:288 [ARG] B:11 [U] 3.37 base/AA stacks 98.66
A:291 [GLN] B:10 [A] 2.86 base:SC, base:SC 98.26
A:322 [GLN] B:10 [A] 4.27 91.42
A:323 [ASN] B:10 [A] 4.02 86.98
A:326 [HIS] B:9 [C] 4.24 97.2
A:326 [HIS] B:10 [A] 3.25 base/AA stacks 97.2
A:360 [LYS] B:7 [G] 3.57 76.27
A:360 [LYS] B:8 [C] 3.48 76.27
A:361 [TYR] B:8 [C] 3.55 93.73
A:361 [TYR] B:9 [C] 4.62 93.73
A:363 [CYS] B:7 [G] 3.43 97.91
A:364 [ARG] B:7 [G] 3.55 98.34
A:364 [ARG] B:8 [C] 2.77 base:SC, base:SC 98.34
A:367 [GLN] B:7 [G] 4.84 98.4
A:412 [GLU] B:6 [U] 3.53 86.41
A:413 [TYR] B:7 [G] 3.34 84.46
A:415 [ASN] B:6 [U] 2.92 base:SC, base:SC 97.57
A:416 [TYR] B:6 [U] 3.03 base/AA stacks 93.65
A:416 [TYR] B:7 [G] 3.15 base/AA stacks 93.65
A:419 [GLN] B:6 [U] 3.15 base:SC 98.43
A:450 [LYS] B:5 [G] 3.1 sugar:SC 98.66
A:450 [LYS] B:6 [U] 3.5 98.66
A:451 [PHE] B:6 [U] 3.52 80.97
A:453 [SER] B:5 [G] 2.72 base:SC 99.0
A:454 [HIS] B:5 [G] 3.11 base/AA stacks 96.8
A:454 [HIS] B:6 [U] 3.26 base/AA stacks 96.8
A:457 [GLU] B:5 [G] 2.65 base:SC, base:SC 95.88
A:494 [MET] B:3 [C] 4.22 84.3
A:495 [PHE] B:3 [C] 3.3 base:BB 77.3
A:496 [HIS] B:3 [C] 4.35 95.05
A:497 [GLN] B:4 [U] 3.42 84.84
A:497 [GLN] B:5 [G] 4.62 84.84
A:498 [PHE] B:5 [G] 3.72 75.38
A:500 [ASN] B:3 [C] 4.56 98.97
A:500 [ASN] B:4 [U] 2.83 base:SC, base:SC 98.97
A:501 [TYR] B:4 [U] 2.89 base/AA stacks 98.63
A:501 [TYR] B:5 [G] 3.14 base/AA stacks 98.63
A:504 [GLN] B:4 [U] 2.93 base:SC 98.74
A:551 [ARG] B:3 [C] 4.52 79.85
A:552 [PHE] B:3 [C] 3.47 base/AA stacks 53.44
A:553 [SER] B:3 [C] 2.6 sugar:BB, sugar:SC 90.07
A:553 [SER] B:4 [U] 3.11 90.07
A:554 [SER] B:3 [C] 2.72 base:BB, base:SC 91.16
A:554 [SER] B:4 [U] 3.3 91.16
A:555 [GLY] B:3 [C] 4.68 93.73
A:557 [LYS] B:4 [U] 2.72 base:SC 91.47

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group95 3V6Y_A_B A: Fem-3 mRNA-binding factor 2, Caenorhabditis elegans (genetically engineered) B: Caenorhabditis elegans (synthetic) Q09312 ARM repeat ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3V6Y_A_B 5WZJ_A_B 0.85 0.64 3.34 0.09 ARM repeat compare
3K49_A_B 3V6Y_A_B 0.80 0.73 3.21 0.5 ARM repeat compare
3V6Y_A_B 5BZ1_A_B 0.68 0.82 2.14 0.33 ARM repeat compare
3BSX_A_C 3V6Y_A_B 0.94 0.85 1.95 0.56 ARM repeat compare
3V6Y_A_B 3V74_A_B 1.00 0.99 0.31 0.91 ARM repeat compare